RNA–Protein interactions for RNA: ENST00000579329.1

LIMD2-207, Transcript of LIM domain containing 2, humanhuman

TSL 1 (best)

Gene LIMD2, Length 920 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD2-207ENST00000579329 NISCHQ9Y2I1 1504 aa58.3■■■■■ 6.92
LIMD2-207ENST00000579329 CCDC180Q9P1Z9 1646 aa51.91■■■■■ 5.9
LIMD2-207ENST00000579329 ABCC9O60706 1549 aa51.36■■■■■ 5.81
LIMD2-207ENST00000579329 RB1CC1Q8TDY2 1594 aa48.9■■■■■ 5.42
LIMD2-207ENST00000579329 NACADO15069 1562 aa48.82■■■■■ 5.41
LIMD2-207ENST00000579329 DCAF8L2P0C7V8 631 aa48.71■■■■■ 5.39
LIMD2-207ENST00000579329 DNAJC5BQ9UF47 199 aa48.58■■■■■ 5.37
LIMD2-207ENST00000579329 ZCCHC6Q5VYS8 1495 aaKnown RBP48.56■■■■■ 5.36
LIMD2-207ENST00000579329 MYO15BQ96JP2 1530 aa48.5■■■■■ 5.35
LIMD2-207ENST00000579329 DCAF1Q9Y4B6 1507 aa48.26■■■■■ 5.32
LIMD2-207ENST00000579329 UNC13AQ9UPW8 1703 aa47.75■■■■■ 5.23
LIMD2-207ENST00000579329 PABPN1Q86U42 306 aaKnown RBP eCLIP47.71■■■■■ 5.23
LIMD2-207ENST00000579329 BICRAQ9NZM4 1560 aa47.39■■■■■ 5.18
LIMD2-207ENST00000579329 SCRIBQ14160 1630 aa47.33■■■■■ 5.17
LIMD2-207ENST00000579329 SHROOM4Q9ULL8 1493 aa46.95■■■■■ 5.11
LIMD2-207ENST00000579329 CC2D2AQ9P2K1 1620 aa46.4■■■■■ 5.02
LIMD2-207ENST00000579329 CECR2Q9BXF3 1484 aa46.29■■■■■ 5
LIMD2-207ENST00000579329 EIF4G1Q04637 1599 aaKnown RBP46.17■■■■■ 4.98
LIMD2-207ENST00000579329 SMARCA4P51532 1647 aa45.26■■■■■ 4.84
LIMD2-207ENST00000579329 BAZ1AQ9NRL2 1556 aaPredicted RBP45.21■■■■■ 4.83
LIMD2-207ENST00000579329 NCAPD3P42695 1498 aa45.04■■■■■ 4.8
LIMD2-207ENST00000579329 ATAD2BQ9ULI0 1458 aa45.04■■■■■ 4.8
LIMD2-207ENST00000579329 SMARCA2P51531 1590 aa45.01■■■■■ 4.8
LIMD2-207ENST00000579329 MROH2BQ7Z745 1585 aa44.91■■■■■ 4.78
LIMD2-207ENST00000579329 DNAJC5Q9H3Z4 198 aa44.9■■■■■ 4.78
LIMD2-207ENST00000579329 PEG3Q9GZU2 1588 aa44.83■■■■■ 4.77
LIMD2-207ENST00000579329 HMGXB3Q12766 1538 aa44.83■■■■■ 4.77
LIMD2-207ENST00000579329 BAZ1BQ9UIG0 1483 aaKnown RBP44.68■■■■■ 4.74
LIMD2-207ENST00000579329 WIZO95785 1651 aa44.42■■■■■ 4.7
LIMD2-207ENST00000579329 CUX2O14529 1486 aa44.4■■■■■ 4.7
LIMD2-207ENST00000579329 RSF1Q96T23 1441 aaPredicted RBP44.36■■■■■ 4.69
LIMD2-207ENST00000579329 ERCC6Q03468 1493 aa44.35■■■■■ 4.69
LIMD2-207ENST00000579329 NESP48681 1621 aa44.01■■■■■ 4.64
LIMD2-207ENST00000579329 TOP2AP11388 1531 aaKnown RBP43.99■■■■■ 4.63
LIMD2-207ENST00000579329 LAMC3Q9Y6N6 1575 aa43.88■■■■■ 4.61
LIMD2-207ENST00000579329 CADPSQ9ULU8 1353 aa43.71■■■■■ 4.59
LIMD2-207ENST00000579329 THOC2Q8NI27 1593 aaKnown RBP43.68■■■■■ 4.58
LIMD2-207ENST00000579329 PDS5BQ9NTI5 1447 aa43.58■■■■■ 4.57
LIMD2-207ENST00000579329 KIF21AQ7Z4S6 1674 aa43.51■■■■■ 4.56
LIMD2-207ENST00000579329 CFTRP13569 1480 aa43.44■■■■■ 4.54
LIMD2-207ENST00000579329 CCDC88BA6NC98 1476 aa43.43■■■■■ 4.54
LIMD2-207ENST00000579329 FANCD2Q9BXW9 1451 aa43.22■■■■■ 4.51
LIMD2-207ENST00000579329 CEP164Q9UPV0 1460 aa43.19■■■■■ 4.51
LIMD2-207ENST00000579329 MRC2Q9UBG0 1479 aa43.15■■■■■ 4.5
LIMD2-207ENST00000579329 SUPT5HO00267 1087 aaKnown RBP43.14■■■■■ 4.5
LIMD2-207ENST00000579329 PRDM2Q13029 1718 aa43.11■■■■■ 4.49
LIMD2-207ENST00000579329 WDR62O43379 1518 aa43.01■■■■■ 4.48
LIMD2-207ENST00000579329 URB2Q14146 1524 aaKnown RBP42.78■■■■■ 4.44
LIMD2-207ENST00000579329 TRIM41Q8WV44 630 aa42.78■■■■■ 4.44
LIMD2-207ENST00000579329 ABCC8Q09428 1581 aa42.53■■■■■ 4.4
LIMD2-207ENST00000579329 TOPBP1Q92547 1522 aa42.51■■■■■ 4.4
LIMD2-207ENST00000579329 DNMBPQ6XZF7 1577 aa42.48■■■■■ 4.39
LIMD2-207ENST00000579329 IFT140Q96RY7 1462 aa42.3■■■■■ 4.36
LIMD2-207ENST00000579329 OSCARQ8IYS5 282 aa42.27■■■■■ 4.36
LIMD2-207ENST00000579329 POLA1P09884 1462 aaPredicted RBP42.15■■■■■ 4.34
LIMD2-207ENST00000579329 CUX1P39880 1505 aa42.15■■■■■ 4.34
LIMD2-207ENST00000579329 ZNF608Q9ULD9 1512 aaPredicted RBP42.07■■■■■ 4.33
LIMD2-207ENST00000579329 TARBP1Q13395 1621 aaKnown RBP42.05■■■■■ 4.32
LIMD2-207ENST00000579329 FGD5Q6ZNL6 1462 aa42.04■■■■■ 4.32
LIMD2-207ENST00000579329 SOGA1O94964 1423 aa41.96■■■■■ 4.31
LIMD2-207ENST00000579329 RAD54L2Q9Y4B4 1467 aa41.95■■■■■ 4.31
LIMD2-207ENST00000579329 EIF4G3O43432 1585 aaKnown RBP41.93■■■■■ 4.3
LIMD2-207ENST00000579329 RIMBP3CA6NJZ7 1639 aa41.9■■■■■ 4.3
LIMD2-207ENST00000579329 RIMBP3BA6NNM3 1639 aa41.9■■■■■ 4.3
LIMD2-207ENST00000579329 RIMBP3Q9UFD9 1639 aa41.9■■■■■ 4.3
LIMD2-207ENST00000579329 WRNQ14191 1432 aaPredicted RBP eCLIP41.86■■■■■ 4.29
LIMD2-207ENST00000579329 AQRO60306 1485 aaKnown RBP eCLIP41.82■■■■■ 4.29
LIMD2-207ENST00000579329 TOP2BQ02880 1626 aa41.77■■■■■ 4.28
LIMD2-207ENST00000579329 BIVM-ERCC5R4GMW8 1640 aa41.77■■■■■ 4.28
LIMD2-207ENST00000579329 WDR97A6NE52 1622 aa41.77■■■■■ 4.28
LIMD2-207ENST00000579329 SYNJ1O43426 1573 aa41.75■■■■■ 4.27
LIMD2-207ENST00000579329 TDRD9Q8NDG6 1382 aaKnown RBP41.73■■■■■ 4.27
LIMD2-207ENST00000579329 ARHGEF11O15085 1522 aa41.67■■■■■ 4.26
LIMD2-207ENST00000579329 ABCA10Q8WWZ4 1543 aa41.63■■■■■ 4.25
LIMD2-207ENST00000579329 CHD1O14646 1710 aa41.54■■■■■ 4.24
LIMD2-207ENST00000579329 GRIN2BQ13224 1484 aa41.51■■■■■ 4.24
LIMD2-207ENST00000579329 GAPVD1Q14C86 1478 aa41.48■■■■■ 4.23
LIMD2-207ENST00000579329 ABCA5Q8WWZ7 1642 aa41.47■■■■■ 4.23
LIMD2-207ENST00000579329 SNAPC4Q5SXM2 1469 aa41.47■■■■■ 4.23
LIMD2-207ENST00000579329 MAGI1Q96QZ7 1491 aaPredicted RBP41.42■■■■■ 4.22
LIMD2-207ENST00000579329 PBRM1Q86U86 1689 aa41.42■■■■■ 4.22
LIMD2-207ENST00000579329 CYB5RLQ6IPT4 315 aa41.35■■■■■ 4.21
LIMD2-207ENST00000579329 FBLN2P98095 1184 aa41.34■■■■■ 4.21
LIMD2-207ENST00000579329 SYNJ2O15056 1496 aa41.25■■■■■ 4.19
LIMD2-207ENST00000579329 CHMP7Q8WUX9 453 aaPredicted RBP41.23■■■■■ 4.19
LIMD2-207ENST00000579329 ARAP1Q96P48 1450 aa41.22■■■■■ 4.19
LIMD2-207ENST00000579329 ERICH3Q5RHP9 1530 aa41.13■■■■■ 4.18
LIMD2-207ENST00000579329 ADAMTS12P58397 1594 aa41.1■■■■■ 4.17
LIMD2-207ENST00000579329 TRHP20396 242 aaPredicted RBP41.04■■■■■ 4.16
LIMD2-207ENST00000579329 FHAD1B1AJZ9 1412 aa41.01■■■■■ 4.16
LIMD2-207ENST00000579329 KIF27Q86VH2 1401 aa41■■■■■ 4.15
LIMD2-207ENST00000579329 CLASP1Q7Z460 1538 aa40.98■■■■■ 4.15
LIMD2-207ENST00000579329 GRIN2AQ12879 1464 aa40.97■■■■■ 4.15
LIMD2-207ENST00000579329 IGF1RP08069 1367 aa40.8■■■■■ 4.12
LIMD2-207ENST00000579329 NUP160Q12769 1436 aa40.79■■■■■ 4.12
LIMD2-207ENST00000579329 CEP170Q5SW79 1584 aa40.77■■■■■ 4.12
LIMD2-207ENST00000579329 CUL7Q14999 1698 aa40.75■■■■■ 4.11
LIMD2-207ENST00000579329 CARMIL1Q5VZK9 1371 aa40.58■■■■■ 4.09
LIMD2-207ENST00000579329 RUSC2Q8N2Y8 1516 aa40.54■■■■■ 4.08
LIMD2-207ENST00000579329 SHROOM2Q13796 1616 aa40.49■■■■■ 4.07
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms