RNA–Protein interactions for RNA: ENST00000579238.1

CASC3-206, Transcript of CASC3, exon junction complex subunit, humanhuman

TSL 2

Gene CASC3, Length 517 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CASC3-206ENST00000579238 NISCHQ9Y2I1 1504 aa21.63■■□□□ 1.05
CASC3-206ENST00000579238 ABCC9O60706 1549 aa19.58■□□□□ 0.73
CASC3-206ENST00000579238 CCDC180Q9P1Z9 1646 aa19.44■□□□□ 0.7
CASC3-206ENST00000579238 RB1CC1Q8TDY2 1594 aa18.59■□□□□ 0.57
CASC3-206ENST00000579238 DNAJC5BQ9UF47 199 aa18.49■□□□□ 0.55
CASC3-206ENST00000579238 NACADO15069 1562 aa18.45■□□□□ 0.54
CASC3-206ENST00000579238 DCAF8L2P0C7V8 631 aa18.31■□□□□ 0.52
CASC3-206ENST00000579238 PABPN1Q86U42 306 aaKnown RBP eCLIP18.22■□□□□ 0.51
CASC3-206ENST00000579238 MYO15BQ96JP2 1530 aa18.17■□□□□ 0.5
CASC3-206ENST00000579238 UNC13AQ9UPW8 1703 aa18.11■□□□□ 0.49
CASC3-206ENST00000579238 BICRAQ9NZM4 1560 aa18.04■□□□□ 0.48
CASC3-206ENST00000579238 ZCCHC6Q5VYS8 1495 aaKnown RBP17.9■□□□□ 0.46
CASC3-206ENST00000579238 DCAF1Q9Y4B6 1507 aa17.88■□□□□ 0.45
CASC3-206ENST00000579238 SHROOM4Q9ULL8 1493 aa17.82■□□□□ 0.44
CASC3-206ENST00000579238 SCRIBQ14160 1630 aa17.7■□□□□ 0.42
CASC3-206ENST00000579238 CC2D2AQ9P2K1 1620 aa17.68■□□□□ 0.42
CASC3-206ENST00000579238 CECR2Q9BXF3 1484 aa17.67■□□□□ 0.42
CASC3-206ENST00000579238 EIF4G1Q04637 1599 aaKnown RBP17.62■□□□□ 0.41
CASC3-206ENST00000579238 DNAJC5Q9H3Z4 198 aa17.1■□□□□ 0.33
CASC3-206ENST00000579238 NCAPD3P42695 1498 aa17.04■□□□□ 0.32
CASC3-206ENST00000579238 ATAD2BQ9ULI0 1458 aa16.96■□□□□ 0.31
CASC3-206ENST00000579238 CUX2O14529 1486 aa16.95■□□□□ 0.3
CASC3-206ENST00000579238 ERCC6Q03468 1493 aa16.93■□□□□ 0.3
CASC3-206ENST00000579238 SMARCA2P51531 1590 aa16.9■□□□□ 0.3
CASC3-206ENST00000579238 SMARCA4P51532 1647 aa16.88■□□□□ 0.29
CASC3-206ENST00000579238 HMGXB3Q12766 1538 aa16.88■□□□□ 0.29
CASC3-206ENST00000579238 BAZ1AQ9NRL2 1556 aaPredicted RBP16.8■□□□□ 0.28
CASC3-206ENST00000579238 BAZ1BQ9UIG0 1483 aaKnown RBP16.78■□□□□ 0.28
CASC3-206ENST00000579238 NESP48681 1621 aa16.78■□□□□ 0.28
CASC3-206ENST00000579238 PEG3Q9GZU2 1588 aa16.74■□□□□ 0.27
CASC3-206ENST00000579238 LAMC3Q9Y6N6 1575 aa16.66■□□□□ 0.26
CASC3-206ENST00000579238 MROH2BQ7Z745 1585 aa16.65■□□□□ 0.26
CASC3-206ENST00000579238 THOC2Q8NI27 1593 aaKnown RBP16.63■□□□□ 0.25
CASC3-206ENST00000579238 PDS5BQ9NTI5 1447 aa16.59■□□□□ 0.25
CASC3-206ENST00000579238 KIF21AQ7Z4S6 1674 aa16.53■□□□□ 0.24
CASC3-206ENST00000579238 CADPSQ9ULU8 1353 aa16.51■□□□□ 0.23
CASC3-206ENST00000579238 MRC2Q9UBG0 1479 aa16.43■□□□□ 0.22
CASC3-206ENST00000579238 WIZO95785 1651 aa16.43■□□□□ 0.22
CASC3-206ENST00000579238 WDR62O43379 1518 aa16.39■□□□□ 0.21
CASC3-206ENST00000579238 CEP164Q9UPV0 1460 aa16.35■□□□□ 0.21
CASC3-206ENST00000579238 FANCD2Q9BXW9 1451 aa16.31■□□□□ 0.2
CASC3-206ENST00000579238 CFTRP13569 1480 aa16.29■□□□□ 0.2
CASC3-206ENST00000579238 RSF1Q96T23 1441 aaPredicted RBP16.28■□□□□ 0.2
CASC3-206ENST00000579238 TRIM41Q8WV44 630 aa16.27■□□□□ 0.2
CASC3-206ENST00000579238 TOP2AP11388 1531 aaKnown RBP16.24■□□□□ 0.19
CASC3-206ENST00000579238 URB2Q14146 1524 aaKnown RBP16.18■□□□□ 0.18
CASC3-206ENST00000579238 OSCARQ8IYS5 282 aa16.16■□□□□ 0.18
CASC3-206ENST00000579238 PRDM2Q13029 1718 aa16.06■□□□□ 0.16
CASC3-206ENST00000579238 CCDC88BA6NC98 1476 aa16.06■□□□□ 0.16
CASC3-206ENST00000579238 IFT140Q96RY7 1462 aa16.03■□□□□ 0.16
CASC3-206ENST00000579238 ZNF608Q9ULD9 1512 aaPredicted RBP15.99■□□□□ 0.15
CASC3-206ENST00000579238 TOPBP1Q92547 1522 aa15.99■□□□□ 0.15
CASC3-206ENST00000579238 ABCC8Q09428 1581 aa15.96■□□□□ 0.15
CASC3-206ENST00000579238 RIMBP3CA6NJZ7 1639 aa15.93■□□□□ 0.14
CASC3-206ENST00000579238 RIMBP3BA6NNM3 1639 aa15.93■□□□□ 0.14
CASC3-206ENST00000579238 RIMBP3Q9UFD9 1639 aa15.93■□□□□ 0.14
CASC3-206ENST00000579238 DNMBPQ6XZF7 1577 aa15.91■□□□□ 0.14
CASC3-206ENST00000579238 EIF4G3O43432 1585 aaKnown RBP15.88■□□□□ 0.13
CASC3-206ENST00000579238 ARHGEF11O15085 1522 aa15.88■□□□□ 0.13
CASC3-206ENST00000579238 TARBP1Q13395 1621 aaKnown RBP15.84■□□□□ 0.13
CASC3-206ENST00000579238 AQRO60306 1485 aaKnown RBP eCLIP15.84■□□□□ 0.135e-6■■□□□ 14.3
CASC3-206ENST00000579238 POLA1P09884 1462 aaPredicted RBP15.82■□□□□ 0.12
CASC3-206ENST00000579238 CYB5RLQ6IPT4 315 aa15.79■□□□□ 0.12
CASC3-206ENST00000579238 CHD1O14646 1710 aa15.77■□□□□ 0.12
CASC3-206ENST00000579238 FBLN2P98095 1184 aa15.77■□□□□ 0.12
CASC3-206ENST00000579238 SOGA1O94964 1423 aa15.76■□□□□ 0.11
CASC3-206ENST00000579238 RAD54L2Q9Y4B4 1467 aa15.75■□□□□ 0.11
CASC3-206ENST00000579238 TDRD9Q8NDG6 1382 aaKnown RBP15.73■□□□□ 0.11
CASC3-206ENST00000579238 ARAP1Q96P48 1450 aa15.72■□□□□ 0.11
CASC3-206ENST00000579238 FGD5Q6ZNL6 1462 aa15.7■□□□□ 0.1
CASC3-206ENST00000579238 WDR97A6NE52 1622 aa15.69■□□□□ 0.1
CASC3-206ENST00000579238 SNAPC4Q5SXM2 1469 aa15.68■□□□□ 0.1
CASC3-206ENST00000579238 CUX1P39880 1505 aa15.66■□□□□ 0.1
CASC3-206ENST00000579238 TRHP20396 242 aaPredicted RBP15.65■□□□□ 0.1
CASC3-206ENST00000579238 CHMP7Q8WUX9 453 aaPredicted RBP15.65■□□□□ 0.1
CASC3-206ENST00000579238 MAGI1Q96QZ7 1491 aaPredicted RBP15.65■□□□□ 0.1
CASC3-206ENST00000579238 GRIN2BQ13224 1484 aa15.63■□□□□ 0.09
CASC3-206ENST00000579238 CLASP1Q7Z460 1538 aa15.63■□□□□ 0.09
CASC3-206ENST00000579238 SYNJ1O43426 1573 aa15.61■□□□□ 0.09
CASC3-206ENST00000579238 SYNJ2O15056 1496 aa15.59■□□□□ 0.09
CASC3-206ENST00000579238 GAPVD1Q14C86 1478 aa15.56■□□□□ 0.08
CASC3-206ENST00000579238 ABCA10Q8WWZ4 1543 aa15.53■□□□□ 0.08
CASC3-206ENST00000579238 PBRM1Q86U86 1689 aa15.51■□□□□ 0.07
CASC3-206ENST00000579238 ABCA5Q8WWZ7 1642 aa15.49■□□□□ 0.07
CASC3-206ENST00000579238 SUPT5HO00267 1087 aaKnown RBP15.45■□□□□ 0.06
CASC3-206ENST00000579238 WRNQ14191 1432 aaPredicted RBP eCLIP15.44■□□□□ 0.06
CASC3-206ENST00000579238 GRIN2AQ12879 1464 aa15.42■□□□□ 0.06
CASC3-206ENST00000579238 NUP160Q12769 1436 aa15.39■□□□□ 0.05
CASC3-206ENST00000579238 ADAMTS12P58397 1594 aa15.38■□□□□ 0.05
CASC3-206ENST00000579238 TOP2BQ02880 1626 aa15.36■□□□□ 0.05
CASC3-206ENST00000579238 BIVM-ERCC5R4GMW8 1640 aa15.36■□□□□ 0.05
CASC3-206ENST00000579238 FHAD1B1AJZ9 1412 aa15.36■□□□□ 0.05
CASC3-206ENST00000579238 CEP170Q5SW79 1584 aa15.36■□□□□ 0.05
CASC3-206ENST00000579238 ERCC6L2Q5T890 1561 aa15.36■□□□□ 0.05
CASC3-206ENST00000579238 ERICH3Q5RHP9 1530 aa15.33■□□□□ 0.04
CASC3-206ENST00000579238 SHROOM2Q13796 1616 aa15.3■□□□□ 0.04
CASC3-206ENST00000579238 AEBP2Q6ZN18 517 aaPredicted RBP15.3■□□□□ 0.04
CASC3-206ENST00000579238 JPH4Q96JJ6 628 aa15.24■□□□□ 0.03
CASC3-206ENST00000579238 PRG4Q92954 1404 aaPredicted RBP15.24■□□□□ 0.03
CASC3-206ENST00000579238 RUSC2Q8N2Y8 1516 aa15.17■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms