RNA–Protein interactions for RNA: ENST00000579211.1

ITGB4-205, Transcript of integrin subunit beta 4, humanhuman

TSL 2

Gene ITGB4, Length 411 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ITGB4-205ENST00000579211 NISCHQ9Y2I1 1504 aa42.38■■■■■ 4.37
ITGB4-205ENST00000579211 CCDC180Q9P1Z9 1646 aa37.82■■■■□ 3.64
ITGB4-205ENST00000579211 ABCC9O60706 1549 aa37.08■■■■□ 3.53
ITGB4-205ENST00000579211 DCAF8L2P0C7V8 631 aa35.68■■■■□ 3.3
ITGB4-205ENST00000579211 RB1CC1Q8TDY2 1594 aa35.65■■■■□ 3.3
ITGB4-205ENST00000579211 NACADO15069 1562 aa35.54■■■■□ 3.28
ITGB4-205ENST00000579211 ZCCHC6Q5VYS8 1495 aaKnown RBP35.24■■■■□ 3.23
ITGB4-205ENST00000579211 MYO15BQ96JP2 1530 aa35.18■■■■□ 3.22
ITGB4-205ENST00000579211 DCAF1Q9Y4B6 1507 aa35.01■■■■□ 3.2
ITGB4-205ENST00000579211 UNC13AQ9UPW8 1703 aa34.94■■■■□ 3.18
ITGB4-205ENST00000579211 PABPN1Q86U42 306 aaKnown RBP eCLIP34.63■■■■□ 3.13
ITGB4-205ENST00000579211 SCRIBQ14160 1630 aa34.52■■■■□ 3.12
ITGB4-205ENST00000579211 BICRAQ9NZM4 1560 aa34.48■■■■□ 3.11
ITGB4-205ENST00000579211 SHROOM4Q9ULL8 1493 aa34.08■■■■□ 3.05
ITGB4-205ENST00000579211 DNAJC5BQ9UF47 199 aa34.02■■■■□ 3.04
ITGB4-205ENST00000579211 EIF4G1Q04637 1599 aaKnown RBP33.62■■■□□ 2.97
ITGB4-205ENST00000579211 CC2D2AQ9P2K1 1620 aa33.56■■■□□ 2.96
ITGB4-205ENST00000579211 CECR2Q9BXF3 1484 aa33.31■■■□□ 2.92
ITGB4-205ENST00000579211 SMARCA4P51532 1647 aa32.97■■■□□ 2.87
ITGB4-205ENST00000579211 BAZ1AQ9NRL2 1556 aaPredicted RBP32.91■■■□□ 2.86
ITGB4-205ENST00000579211 SMARCA2P51531 1590 aa32.77■■■□□ 2.84
ITGB4-205ENST00000579211 ATAD2BQ9ULI0 1458 aa32.74■■■□□ 2.83
ITGB4-205ENST00000579211 NCAPD3P42695 1498 aa32.72■■■□□ 2.83
ITGB4-205ENST00000579211 MROH2BQ7Z745 1585 aa32.66■■■□□ 2.82
ITGB4-205ENST00000579211 HMGXB3Q12766 1538 aa32.58■■■□□ 2.81
ITGB4-205ENST00000579211 PEG3Q9GZU2 1588 aa32.56■■■□□ 2.8
ITGB4-205ENST00000579211 BAZ1BQ9UIG0 1483 aaKnown RBP32.54■■■□□ 2.8
ITGB4-205ENST00000579211 WIZO95785 1651 aa32.4■■■□□ 2.78
ITGB4-205ENST00000579211 RSF1Q96T23 1441 aaPredicted RBP32.22■■■□□ 2.75
ITGB4-205ENST00000579211 ERCC6Q03468 1493 aa32.03■■■□□ 2.72
ITGB4-205ENST00000579211 NESP48681 1621 aa32.03■■■□□ 2.72
ITGB4-205ENST00000579211 TOP2AP11388 1531 aaKnown RBP31.98■■■□□ 2.71
ITGB4-205ENST00000579211 LAMC3Q9Y6N6 1575 aa31.97■■■□□ 2.71
ITGB4-205ENST00000579211 CADPSQ9ULU8 1353 aa31.8■■■□□ 2.68
ITGB4-205ENST00000579211 KIF21AQ7Z4S6 1674 aa31.77■■■□□ 2.68
ITGB4-205ENST00000579211 PDS5BQ9NTI5 1447 aa31.75■■■□□ 2.67
ITGB4-205ENST00000579211 CUX2O14529 1486 aa31.64■■■□□ 2.66
ITGB4-205ENST00000579211 CCDC88BA6NC98 1476 aa31.59■■■□□ 2.65
ITGB4-205ENST00000579211 THOC2Q8NI27 1593 aaKnown RBP31.56■■■□□ 2.64
ITGB4-205ENST00000579211 CFTRP13569 1480 aa31.56■■■□□ 2.64
ITGB4-205ENST00000579211 PRDM2Q13029 1718 aa31.55■■■□□ 2.64
ITGB4-205ENST00000579211 SUPT5HO00267 1087 aaKnown RBP31.51■■■□□ 2.63
ITGB4-205ENST00000579211 FANCD2Q9BXW9 1451 aa31.46■■■□□ 2.63
ITGB4-205ENST00000579211 CEP164Q9UPV0 1460 aa31.46■■■□□ 2.63
ITGB4-205ENST00000579211 MRC2Q9UBG0 1479 aa31.4■■■□□ 2.62
ITGB4-205ENST00000579211 WDR62O43379 1518 aa31.29■■■□□ 2.6
ITGB4-205ENST00000579211 URB2Q14146 1524 aaKnown RBP31.12■■■□□ 2.57
ITGB4-205ENST00000579211 ABCC8Q09428 1581 aa30.98■■■□□ 2.55
ITGB4-205ENST00000579211 TOPBP1Q92547 1522 aa30.94■■■□□ 2.54
ITGB4-205ENST00000579211 DNMBPQ6XZF7 1577 aa30.92■■■□□ 2.54
ITGB4-205ENST00000579211 DNAJC5Q9H3Z4 198 aa30.78■■■□□ 2.52
ITGB4-205ENST00000579211 IFT140Q96RY7 1462 aa30.77■■■□□ 2.52
ITGB4-205ENST00000579211 POLA1P09884 1462 aaPredicted RBP30.65■■■□□ 2.5
ITGB4-205ENST00000579211 CUX1P39880 1505 aa30.65■■■□□ 2.5
ITGB4-205ENST00000579211 ZNF608Q9ULD9 1512 aaPredicted RBP30.62■■■□□ 2.49
ITGB4-205ENST00000579211 TARBP1Q13395 1621 aaKnown RBP30.62■■■□□ 2.49
ITGB4-205ENST00000579211 FGD5Q6ZNL6 1462 aa30.6■■■□□ 2.49
ITGB4-205ENST00000579211 SOGA1O94964 1423 aa30.57■■■□□ 2.48
ITGB4-205ENST00000579211 EIF4G3O43432 1585 aaKnown RBP30.57■■■□□ 2.48
ITGB4-205ENST00000579211 RAD54L2Q9Y4B4 1467 aa30.55■■■□□ 2.48
ITGB4-205ENST00000579211 AQRO60306 1485 aaKnown RBP eCLIP30.47■■■□□ 2.47
ITGB4-205ENST00000579211 WRNQ14191 1432 aaPredicted RBP eCLIP30.44■■■□□ 2.46
ITGB4-205ENST00000579211 BIVM-ERCC5R4GMW8 1640 aa30.43■■■□□ 2.46
ITGB4-205ENST00000579211 TOP2BQ02880 1626 aa30.4■■■□□ 2.46
ITGB4-205ENST00000579211 TDRD9Q8NDG6 1382 aaKnown RBP30.4■■■□□ 2.46
ITGB4-205ENST00000579211 WDR97A6NE52 1622 aa30.39■■■□□ 2.46
ITGB4-205ENST00000579211 SYNJ1O43426 1573 aa30.38■■■□□ 2.45
ITGB4-205ENST00000579211 OSCARQ8IYS5 282 aa30.38■■■□□ 2.45
ITGB4-205ENST00000579211 CHD1O14646 1710 aa30.3■■■□□ 2.44
ITGB4-205ENST00000579211 PBRM1Q86U86 1689 aa30.28■■■□□ 2.44
ITGB4-205ENST00000579211 FBLN2P98095 1184 aa30.26■■■□□ 2.43
ITGB4-205ENST00000579211 ABCA10Q8WWZ4 1543 aa30.25■■■□□ 2.43
ITGB4-205ENST00000579211 GAPVD1Q14C86 1478 aa30.22■■■□□ 2.43
ITGB4-205ENST00000579211 GRIN2BQ13224 1484 aa30.21■■■□□ 2.43
ITGB4-205ENST00000579211 SNAPC4Q5SXM2 1469 aa30.19■■■□□ 2.42
ITGB4-205ENST00000579211 ABCA5Q8WWZ7 1642 aa30.18■■■□□ 2.42
ITGB4-205ENST00000579211 MAGI1Q96QZ7 1491 aaPredicted RBP30.13■■■□□ 2.41
ITGB4-205ENST00000579211 CHMP7Q8WUX9 453 aaPredicted RBP30.11■■■□□ 2.41
ITGB4-205ENST00000579211 SYNJ2O15056 1496 aa30.02■■■□□ 2.4
ITGB4-205ENST00000579211 ERICH3Q5RHP9 1530 aa29.93■■■□□ 2.38
ITGB4-205ENST00000579211 ADAMTS12P58397 1594 aa29.9■■■□□ 2.38
ITGB4-205ENST00000579211 RIMBP3CA6NJZ7 1639 aa29.9■■■□□ 2.38
ITGB4-205ENST00000579211 RIMBP3BA6NNM3 1639 aa29.9■■■□□ 2.38
ITGB4-205ENST00000579211 RIMBP3Q9UFD9 1639 aa29.9■■■□□ 2.38
ITGB4-205ENST00000579211 TRIM41Q8WV44 630 aa29.87■■■□□ 2.37
ITGB4-205ENST00000579211 FHAD1B1AJZ9 1412 aa29.84■■■□□ 2.37
ITGB4-205ENST00000579211 KIF27Q86VH2 1401 aa29.84■■■□□ 2.37
ITGB4-205ENST00000579211 ARHGEF11O15085 1522 aa29.83■■■□□ 2.37
ITGB4-205ENST00000579211 GRIN2AQ12879 1464 aa29.81■■■□□ 2.36
ITGB4-205ENST00000579211 CLASP1Q7Z460 1538 aa29.8■■■□□ 2.36
ITGB4-205ENST00000579211 CUL7Q14999 1698 aa29.72■■■□□ 2.35
ITGB4-205ENST00000579211 CEP170Q5SW79 1584 aa29.68■■■□□ 2.34
ITGB4-205ENST00000579211 IGF1RP08069 1367 aa29.65■■■□□ 2.34
ITGB4-205ENST00000579211 CYB5RLQ6IPT4 315 aa29.63■■■□□ 2.33
ITGB4-205ENST00000579211 NUP160Q12769 1436 aa29.62■■■□□ 2.33
ITGB4-205ENST00000579211 CARMIL1Q5VZK9 1371 aa29.54■■■□□ 2.32
ITGB4-205ENST00000579211 ARAP1Q96P48 1450 aa29.54■■■□□ 2.32
ITGB4-205ENST00000579211 RUSC2Q8N2Y8 1516 aa29.5■■■□□ 2.31
ITGB4-205ENST00000579211 SHROOM2Q13796 1616 aa29.48■■■□□ 2.31
ITGB4-205ENST00000579211 JPH4Q96JJ6 628 aa29.41■■■□□ 2.3
Retrieved 100 of 20,778 RNA–protein pairs in 72 ms