RNA–Protein interactions for RNA: ENST00000578996.1

CDK5RAP3-211, Transcript of CDK5 regulatory subunit associated protein 3, humanhuman

TSL 2

Gene CDK5RAP3, Length 566 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3-211ENST00000578996 NISCHQ9Y2I1 1504 aa22.83■■□□□ 1.25
CDK5RAP3-211ENST00000578996 ABCC9O60706 1549 aa20.43■□□□□ 0.86
CDK5RAP3-211ENST00000578996 CCDC180Q9P1Z9 1646 aa20.42■□□□□ 0.86
CDK5RAP3-211ENST00000578996 RB1CC1Q8TDY2 1594 aa19.44■□□□□ 0.7
CDK5RAP3-211ENST00000578996 DCAF8L2P0C7V8 631 aa19.36■□□□□ 0.69
CDK5RAP3-211ENST00000578996 NACADO15069 1562 aa19.3■□□□□ 0.68
CDK5RAP3-211ENST00000578996 PABPN1Q86U42 306 aaKnown RBP eCLIP19.04■□□□□ 0.645e-10■■■□□ 16.7
CDK5RAP3-211ENST00000578996 DNAJC5BQ9UF47 199 aa19.02■□□□□ 0.64
CDK5RAP3-211ENST00000578996 MYO15BQ96JP2 1530 aa19.01■□□□□ 0.63
CDK5RAP3-211ENST00000578996 UNC13AQ9UPW8 1703 aa18.96■□□□□ 0.63
CDK5RAP3-211ENST00000578996 ZCCHC6Q5VYS8 1495 aaKnown RBP18.95■□□□□ 0.62
CDK5RAP3-211ENST00000578996 BICRAQ9NZM4 1560 aa18.83■□□□□ 0.6
CDK5RAP3-211ENST00000578996 DCAF1Q9Y4B6 1507 aa18.82■□□□□ 0.6
CDK5RAP3-211ENST00000578996 SCRIBQ14160 1630 aa18.7■□□□□ 0.58
CDK5RAP3-211ENST00000578996 SHROOM4Q9ULL8 1493 aa18.57■□□□□ 0.56
CDK5RAP3-211ENST00000578996 CC2D2AQ9P2K1 1620 aa18.41■□□□□ 0.54
CDK5RAP3-211ENST00000578996 EIF4G1Q04637 1599 aaKnown RBP18.4■□□□□ 0.54
CDK5RAP3-211ENST00000578996 CECR2Q9BXF3 1484 aa18.36■□□□□ 0.53
CDK5RAP3-211ENST00000578996 NCAPD3P42695 1498 aa17.81■□□□□ 0.44
CDK5RAP3-211ENST00000578996 SMARCA4P51532 1647 aa17.8■□□□□ 0.44
CDK5RAP3-211ENST00000578996 ATAD2BQ9ULI0 1458 aa17.79■□□□□ 0.44
CDK5RAP3-211ENST00000578996 SMARCA2P51531 1590 aa17.74■□□□□ 0.43
CDK5RAP3-211ENST00000578996 BAZ1AQ9NRL2 1556 aaPredicted RBP17.73■□□□□ 0.43
CDK5RAP3-211ENST00000578996 HMGXB3Q12766 1538 aa17.69■□□□□ 0.42
CDK5RAP3-211ENST00000578996 BAZ1BQ9UIG0 1483 aaKnown RBP17.66■□□□□ 0.42
CDK5RAP3-211ENST00000578996 ERCC6Q03468 1493 aa17.64■□□□□ 0.41
CDK5RAP3-211ENST00000578996 MROH2BQ7Z745 1585 aa17.62■□□□□ 0.41
CDK5RAP3-211ENST00000578996 PEG3Q9GZU2 1588 aa17.58■□□□□ 0.41
CDK5RAP3-211ENST00000578996 NESP48681 1621 aa17.55■□□□□ 0.4
CDK5RAP3-211ENST00000578996 CUX2O14529 1486 aa17.51■□□□□ 0.39
CDK5RAP3-211ENST00000578996 WIZO95785 1651 aa17.42■□□□□ 0.38
CDK5RAP3-211ENST00000578996 LAMC3Q9Y6N6 1575 aa17.41■□□□□ 0.38
CDK5RAP3-211ENST00000578996 DNAJC5Q9H3Z4 198 aa17.39■□□□□ 0.37
CDK5RAP3-211ENST00000578996 THOC2Q8NI27 1593 aaKnown RBP17.33■□□□□ 0.37
CDK5RAP3-211ENST00000578996 PDS5BQ9NTI5 1447 aa17.33■□□□□ 0.36
CDK5RAP3-211ENST00000578996 KIF21AQ7Z4S6 1674 aa17.32■□□□□ 0.36
CDK5RAP3-211ENST00000578996 CADPSQ9ULU8 1353 aa17.29■□□□□ 0.36
CDK5RAP3-211ENST00000578996 RSF1Q96T23 1441 aaPredicted RBP17.27■□□□□ 0.35
CDK5RAP3-211ENST00000578996 TOP2AP11388 1531 aaKnown RBP17.19■□□□□ 0.34
CDK5RAP3-211ENST00000578996 MRC2Q9UBG0 1479 aa17.18■□□□□ 0.34
CDK5RAP3-211ENST00000578996 CEP164Q9UPV0 1460 aa17.15■□□□□ 0.34
CDK5RAP3-211ENST00000578996 FANCD2Q9BXW9 1451 aa17.12■□□□□ 0.33
CDK5RAP3-211ENST00000578996 WDR62O43379 1518 aa17.11■□□□□ 0.33
CDK5RAP3-211ENST00000578996 CFTRP13569 1480 aa17.11■□□□□ 0.33
CDK5RAP3-211ENST00000578996 CCDC88BA6NC98 1476 aa16.99■□□□□ 0.31
CDK5RAP3-211ENST00000578996 URB2Q14146 1524 aaKnown RBP16.96■□□□□ 0.31
CDK5RAP3-211ENST00000578996 PRDM2Q13029 1718 aa16.93■□□□□ 0.3
CDK5RAP3-211ENST00000578996 TOPBP1Q92547 1522 aa16.8■□□□□ 0.28
CDK5RAP3-211ENST00000578996 TRIM41Q8WV44 630 aa16.78■□□□□ 0.28
CDK5RAP3-211ENST00000578996 IFT140Q96RY7 1462 aa16.78■□□□□ 0.28
CDK5RAP3-211ENST00000578996 OSCARQ8IYS5 282 aa16.76■□□□□ 0.27
CDK5RAP3-211ENST00000578996 ABCC8Q09428 1581 aa16.75■□□□□ 0.27
CDK5RAP3-211ENST00000578996 ZNF608Q9ULD9 1512 aaPredicted RBP16.75■□□□□ 0.27
CDK5RAP3-211ENST00000578996 DNMBPQ6XZF7 1577 aa16.74■□□□□ 0.27
CDK5RAP3-211ENST00000578996 SUPT5HO00267 1087 aaKnown RBP16.67■□□□□ 0.26
CDK5RAP3-211ENST00000578996 EIF4G3O43432 1585 aaKnown RBP16.67■□□□□ 0.26
CDK5RAP3-211ENST00000578996 POLA1P09884 1462 aaPredicted RBP16.63■□□□□ 0.25
CDK5RAP3-211ENST00000578996 AQRO60306 1485 aaKnown RBP eCLIP16.62■□□□□ 0.25
CDK5RAP3-211ENST00000578996 TARBP1Q13395 1621 aaKnown RBP16.62■□□□□ 0.25
CDK5RAP3-211ENST00000578996 RAD54L2Q9Y4B4 1467 aa16.59■□□□□ 0.25
CDK5RAP3-211ENST00000578996 SOGA1O94964 1423 aa16.57■□□□□ 0.24
CDK5RAP3-211ENST00000578996 FGD5Q6ZNL6 1462 aa16.56■□□□□ 0.24
CDK5RAP3-211ENST00000578996 FBLN2P98095 1184 aa16.56■□□□□ 0.24
CDK5RAP3-211ENST00000578996 CUX1P39880 1505 aa16.55■□□□□ 0.24
CDK5RAP3-211ENST00000578996 TDRD9Q8NDG6 1382 aaKnown RBP16.54■□□□□ 0.24
CDK5RAP3-211ENST00000578996 RIMBP3CA6NJZ7 1639 aa16.52■□□□□ 0.24
CDK5RAP3-211ENST00000578996 RIMBP3BA6NNM3 1639 aa16.52■□□□□ 0.24
CDK5RAP3-211ENST00000578996 RIMBP3Q9UFD9 1639 aa16.52■□□□□ 0.24
CDK5RAP3-211ENST00000578996 CHD1O14646 1710 aa16.51■□□□□ 0.23
CDK5RAP3-211ENST00000578996 ARHGEF11O15085 1522 aa16.49■□□□□ 0.23
CDK5RAP3-211ENST00000578996 SNAPC4Q5SXM2 1469 aa16.47■□□□□ 0.23
CDK5RAP3-211ENST00000578996 WDR97A6NE52 1622 aa16.45■□□□□ 0.22
CDK5RAP3-211ENST00000578996 CHMP7Q8WUX9 453 aaPredicted RBP16.41■□□□□ 0.22
CDK5RAP3-211ENST00000578996 GRIN2BQ13224 1484 aa16.41■□□□□ 0.22
CDK5RAP3-211ENST00000578996 CYB5RLQ6IPT4 315 aa16.39■□□□□ 0.21
CDK5RAP3-211ENST00000578996 MAGI1Q96QZ7 1491 aaPredicted RBP16.39■□□□□ 0.21
CDK5RAP3-211ENST00000578996 GAPVD1Q14C86 1478 aa16.37■□□□□ 0.21
CDK5RAP3-211ENST00000578996 PBRM1Q86U86 1689 aa16.36■□□□□ 0.21
CDK5RAP3-211ENST00000578996 SYNJ2O15056 1496 aa16.35■□□□□ 0.21
CDK5RAP3-211ENST00000578996 ABCA10Q8WWZ4 1543 aa16.34■□□□□ 0.21
CDK5RAP3-211ENST00000578996 SYNJ1O43426 1573 aa16.34■□□□□ 0.21
CDK5RAP3-211ENST00000578996 WRNQ14191 1432 aaPredicted RBP eCLIP16.32■□□□□ 0.2
CDK5RAP3-211ENST00000578996 ARAP1Q96P48 1450 aa16.32■□□□□ 0.2
CDK5RAP3-211ENST00000578996 ABCA5Q8WWZ7 1642 aa16.31■□□□□ 0.2
CDK5RAP3-211ENST00000578996 CLASP1Q7Z460 1538 aa16.31■□□□□ 0.2
CDK5RAP3-211ENST00000578996 TOP2BQ02880 1626 aa16.29■□□□□ 0.2
CDK5RAP3-211ENST00000578996 BIVM-ERCC5R4GMW8 1640 aa16.29■□□□□ 0.2
CDK5RAP3-211ENST00000578996 TRHP20396 242 aaPredicted RBP16.22■□□□□ 0.19
CDK5RAP3-211ENST00000578996 ADAMTS12P58397 1594 aa16.21■□□□□ 0.18
CDK5RAP3-211ENST00000578996 GRIN2AQ12879 1464 aa16.2■□□□□ 0.18
CDK5RAP3-211ENST00000578996 FHAD1B1AJZ9 1412 aa16.16■□□□□ 0.18
CDK5RAP3-211ENST00000578996 ERICH3Q5RHP9 1530 aa16.14■□□□□ 0.18
CDK5RAP3-211ENST00000578996 CEP170Q5SW79 1584 aa16.14■□□□□ 0.17
CDK5RAP3-211ENST00000578996 NUP160Q12769 1436 aa16.11■□□□□ 0.17
CDK5RAP3-211ENST00000578996 ERCC6L2Q5T890 1561 aa16.09■□□□□ 0.17
CDK5RAP3-211ENST00000578996 SHROOM2Q13796 1616 aa16.01■□□□□ 0.15
CDK5RAP3-211ENST00000578996 KIF27Q86VH2 1401 aa16.01■□□□□ 0.15
CDK5RAP3-211ENST00000578996 PRG4Q92954 1404 aaPredicted RBP16■□□□□ 0.15
CDK5RAP3-211ENST00000578996 JPH4Q96JJ6 628 aa15.98■□□□□ 0.15
CDK5RAP3-211ENST00000578996 RUSC2Q8N2Y8 1516 aa15.98■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms