RNA–Protein interactions for RNA: ENST00000578733.5

CDK5RAP3-210, Transcript of CDK5 regulatory subunit associated protein 3, humanhuman

TSL 2

Gene CDK5RAP3, Length 578 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3-210ENST00000578733 NISCHQ9Y2I1 1504 aa26.63■■□□□ 1.85
CDK5RAP3-210ENST00000578733 CCDC180Q9P1Z9 1646 aa23.66■■□□□ 1.38
CDK5RAP3-210ENST00000578733 ABCC9O60706 1549 aa23.16■■□□□ 1.3
CDK5RAP3-210ENST00000578733 ZCCHC6Q5VYS8 1495 aaKnown RBP22.26■■□□□ 1.15
CDK5RAP3-210ENST00000578733 DCAF1Q9Y4B6 1507 aa22.1■■□□□ 1.13
CDK5RAP3-210ENST00000578733 NACADO15069 1562 aa22.09■■□□□ 1.13
CDK5RAP3-210ENST00000578733 DCAF8L2P0C7V8 631 aa22.06■■□□□ 1.12
CDK5RAP3-210ENST00000578733 RB1CC1Q8TDY2 1594 aa22.06■■□□□ 1.12
CDK5RAP3-210ENST00000578733 DNAJC5BQ9UF47 199 aa22.05■■□□□ 1.12
CDK5RAP3-210ENST00000578733 MYO15BQ96JP2 1530 aa22.05■■□□□ 1.12
CDK5RAP3-210ENST00000578733 UNC13AQ9UPW8 1703 aa21.6■■□□□ 1.05
CDK5RAP3-210ENST00000578733 SCRIBQ14160 1630 aa21.52■■□□□ 1.04
CDK5RAP3-210ENST00000578733 PABPN1Q86U42 306 aaKnown RBP eCLIP21.46■■□□□ 1.03
CDK5RAP3-210ENST00000578733 BICRAQ9NZM4 1560 aa21.27■□□□□ 0.99
CDK5RAP3-210ENST00000578733 SHROOM4Q9ULL8 1493 aa21.19■□□□□ 0.98
CDK5RAP3-210ENST00000578733 CECR2Q9BXF3 1484 aa20.95■□□□□ 0.94
CDK5RAP3-210ENST00000578733 CC2D2AQ9P2K1 1620 aa20.94■□□□□ 0.94
CDK5RAP3-210ENST00000578733 EIF4G1Q04637 1599 aaKnown RBP20.8■□□□□ 0.92
CDK5RAP3-210ENST00000578733 BAZ1AQ9NRL2 1556 aaPredicted RBP20.68■□□□□ 0.9
CDK5RAP3-210ENST00000578733 DNAJC5Q9H3Z4 198 aa20.65■□□□□ 0.9
CDK5RAP3-210ENST00000578733 SMARCA4P51532 1647 aa20.64■□□□□ 0.89
CDK5RAP3-210ENST00000578733 MROH2BQ7Z745 1585 aa20.48■□□□□ 0.87
CDK5RAP3-210ENST00000578733 SMARCA2P51531 1590 aa20.45■□□□□ 0.86
CDK5RAP3-210ENST00000578733 PEG3Q9GZU2 1588 aa20.42■□□□□ 0.86
CDK5RAP3-210ENST00000578733 ATAD2BQ9ULI0 1458 aa20.36■□□□□ 0.85
CDK5RAP3-210ENST00000578733 RSF1Q96T23 1441 aaPredicted RBP20.36■□□□□ 0.85
CDK5RAP3-210ENST00000578733 WIZO95785 1651 aa20.35■□□□□ 0.85
CDK5RAP3-210ENST00000578733 HMGXB3Q12766 1538 aa20.31■□□□□ 0.84
CDK5RAP3-210ENST00000578733 NCAPD3P42695 1498 aa20.29■□□□□ 0.84
CDK5RAP3-210ENST00000578733 BAZ1BQ9UIG0 1483 aaKnown RBP20.27■□□□□ 0.84
CDK5RAP3-210ENST00000578733 CUX2O14529 1486 aa20.24■□□□□ 0.83
CDK5RAP3-210ENST00000578733 TOP2AP11388 1531 aaKnown RBP20.17■□□□□ 0.82
CDK5RAP3-210ENST00000578733 SUPT5HO00267 1087 aaKnown RBP20.13■□□□□ 0.81
CDK5RAP3-210ENST00000578733 ERCC6Q03468 1493 aa20.09■□□□□ 0.81
CDK5RAP3-210ENST00000578733 CCDC88BA6NC98 1476 aa19.86■□□□□ 0.77
CDK5RAP3-210ENST00000578733 PRDM2Q13029 1718 aa19.81■□□□□ 0.76
CDK5RAP3-210ENST00000578733 LAMC3Q9Y6N6 1575 aa19.8■□□□□ 0.76
CDK5RAP3-210ENST00000578733 NESP48681 1621 aa19.75■□□□□ 0.75
CDK5RAP3-210ENST00000578733 CADPSQ9ULU8 1353 aa19.72■□□□□ 0.75
CDK5RAP3-210ENST00000578733 THOC2Q8NI27 1593 aaKnown RBP19.71■□□□□ 0.75
CDK5RAP3-210ENST00000578733 CFTRP13569 1480 aa19.68■□□□□ 0.74
CDK5RAP3-210ENST00000578733 PDS5BQ9NTI5 1447 aa19.61■□□□□ 0.73
CDK5RAP3-210ENST00000578733 KIF21AQ7Z4S6 1674 aa19.6■□□□□ 0.73
CDK5RAP3-210ENST00000578733 TRIM41Q8WV44 630 aa19.52■□□□□ 0.72
CDK5RAP3-210ENST00000578733 FANCD2Q9BXW9 1451 aa19.52■□□□□ 0.72
CDK5RAP3-210ENST00000578733 CEP164Q9UPV0 1460 aa19.5■□□□□ 0.71
CDK5RAP3-210ENST00000578733 MRC2Q9UBG0 1479 aa19.39■□□□□ 0.69
CDK5RAP3-210ENST00000578733 WDR62O43379 1518 aa19.36■□□□□ 0.69
CDK5RAP3-210ENST00000578733 ABCC8Q09428 1581 aa19.36■□□□□ 0.69
CDK5RAP3-210ENST00000578733 DNMBPQ6XZF7 1577 aa19.32■□□□□ 0.68
CDK5RAP3-210ENST00000578733 URB2Q14146 1524 aaKnown RBP19.26■□□□□ 0.67
CDK5RAP3-210ENST00000578733 BIVM-ERCC5R4GMW8 1640 aa19.25■□□□□ 0.67
CDK5RAP3-210ENST00000578733 TOPBP1Q92547 1522 aa19.25■□□□□ 0.67
CDK5RAP3-210ENST00000578733 WRNQ14191 1432 aaPredicted RBP eCLIP19.25■□□□□ 0.67
CDK5RAP3-210ENST00000578733 TOP2BQ02880 1626 aa19.22■□□□□ 0.67
CDK5RAP3-210ENST00000578733 CUX1P39880 1505 aa19.2■□□□□ 0.66
CDK5RAP3-210ENST00000578733 OSCARQ8IYS5 282 aa19.2■□□□□ 0.66
CDK5RAP3-210ENST00000578733 SYNJ1O43426 1573 aa19.19■□□□□ 0.66
CDK5RAP3-210ENST00000578733 FGD5Q6ZNL6 1462 aa19.11■□□□□ 0.65
CDK5RAP3-210ENST00000578733 POLA1P09884 1462 aaPredicted RBP19.1■□□□□ 0.65
CDK5RAP3-210ENST00000578733 IFT140Q96RY7 1462 aa19.07■□□□□ 0.64
CDK5RAP3-210ENST00000578733 TARBP1Q13395 1621 aaKnown RBP19.03■□□□□ 0.64
CDK5RAP3-210ENST00000578733 WDR97A6NE52 1622 aa19.03■□□□□ 0.64
CDK5RAP3-210ENST00000578733 SOGA1O94964 1423 aa19.02■□□□□ 0.64
CDK5RAP3-210ENST00000578733 RIMBP3CA6NJZ7 1639 aa18.98■□□□□ 0.63
CDK5RAP3-210ENST00000578733 RIMBP3BA6NNM3 1639 aa18.98■□□□□ 0.63
CDK5RAP3-210ENST00000578733 RIMBP3Q9UFD9 1639 aa18.98■□□□□ 0.63
CDK5RAP3-210ENST00000578733 RAD54L2Q9Y4B4 1467 aa18.97■□□□□ 0.63
CDK5RAP3-210ENST00000578733 ABCA10Q8WWZ4 1543 aa18.96■□□□□ 0.63
CDK5RAP3-210ENST00000578733 CHIC1Q5VXU3 224 aa18.96■□□□□ 0.63
CDK5RAP3-210ENST00000578733 EIF4G3O43432 1585 aaKnown RBP18.93■□□□□ 0.62
CDK5RAP3-210ENST00000578733 PBRM1Q86U86 1689 aa18.9■□□□□ 0.62
CDK5RAP3-210ENST00000578733 ABCA5Q8WWZ7 1642 aa18.89■□□□□ 0.62
CDK5RAP3-210ENST00000578733 ARHGEF11O15085 1522 aa18.89■□□□□ 0.61
CDK5RAP3-210ENST00000578733 ZNF608Q9ULD9 1512 aaPredicted RBP18.86■□□□□ 0.61
CDK5RAP3-210ENST00000578733 KIF27Q86VH2 1401 aa18.84■□□□□ 0.61
CDK5RAP3-210ENST00000578733 GAPVD1Q14C86 1478 aa18.83■□□□□ 0.6
CDK5RAP3-210ENST00000578733 TDRD9Q8NDG6 1382 aaKnown RBP18.81■□□□□ 0.6
CDK5RAP3-210ENST00000578733 AQRO60306 1485 aaKnown RBP eCLIP18.81■□□□□ 0.63e-7■■■■□ 19.4
CDK5RAP3-210ENST00000578733 GRIN2BQ13224 1484 aa18.79■□□□□ 0.6
CDK5RAP3-210ENST00000578733 ERICH3Q5RHP9 1530 aa18.78■□□□□ 0.6
CDK5RAP3-210ENST00000578733 EEA1Q15075 1411 aa18.76■□□□□ 0.59
CDK5RAP3-210ENST00000578733 CUL7Q14999 1698 aa18.76■□□□□ 0.59
CDK5RAP3-210ENST00000578733 CYB5RLQ6IPT4 315 aa18.74■□□□□ 0.59
CDK5RAP3-210ENST00000578733 MAGI1Q96QZ7 1491 aaPredicted RBP18.73■□□□□ 0.59
CDK5RAP3-210ENST00000578733 SNAPC4Q5SXM2 1469 aa18.7■□□□□ 0.58
CDK5RAP3-210ENST00000578733 ADAMTS12P58397 1594 aa18.68■□□□□ 0.58
CDK5RAP3-210ENST00000578733 TRHP20396 242 aaPredicted RBP18.68■□□□□ 0.58
CDK5RAP3-210ENST00000578733 CHD1O14646 1710 aa18.67■□□□□ 0.58
CDK5RAP3-210ENST00000578733 RUSC2Q8N2Y8 1516 aa18.67■□□□□ 0.58
CDK5RAP3-210ENST00000578733 ARAP1Q96P48 1450 aa18.65■□□□□ 0.58
CDK5RAP3-210ENST00000578733 FHAD1B1AJZ9 1412 aa18.63■□□□□ 0.57
CDK5RAP3-210ENST00000578733 SYNJ2O15056 1496 aa18.63■□□□□ 0.57
CDK5RAP3-210ENST00000578733 IGF1RP08069 1367 aa18.62■□□□□ 0.57
CDK5RAP3-210ENST00000578733 CSRNP3Q8WYN3 585 aa18.59■□□□□ 0.57
CDK5RAP3-210ENST00000578733 FAM9AQ8IZU1 332 aaPredicted RBP18.58■□□□□ 0.56
CDK5RAP3-210ENST00000578733 CHMP7Q8WUX9 453 aaPredicted RBP18.58■□□□□ 0.56
CDK5RAP3-210ENST00000578733 CARMIL1Q5VZK9 1371 aa18.57■□□□□ 0.56
CDK5RAP3-210ENST00000578733 FBLN2P98095 1184 aa18.56■□□□□ 0.56
CDK5RAP3-210ENST00000578733 KIF21BO75037 1637 aa18.55■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms