RNA–Protein interactions for RNA: ENST00000578609.1

SLC6A4-204, Transcript of solute carrier family 6 member 4, humanhuman

TSL 4

Gene SLC6A4, Length 566 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLC6A4-204ENST00000578609 NISCHQ9Y2I1 1504 aa37.08■■■■□ 3.53
SLC6A4-204ENST00000578609 CCDC180Q9P1Z9 1646 aa32.96■■■□□ 2.87
SLC6A4-204ENST00000578609 ABCC9O60706 1549 aa32.02■■■□□ 2.72
SLC6A4-204ENST00000578609 ZCCHC6Q5VYS8 1495 aaKnown RBP30.95■■■□□ 2.55
SLC6A4-204ENST00000578609 NACADO15069 1562 aa30.93■■■□□ 2.54
SLC6A4-204ENST00000578609 RB1CC1Q8TDY2 1594 aa30.92■■■□□ 2.54
SLC6A4-204ENST00000578609 MYO15BQ96JP2 1530 aa30.84■■■□□ 2.53
SLC6A4-204ENST00000578609 DCAF1Q9Y4B6 1507 aa30.74■■■□□ 2.51
SLC6A4-204ENST00000578609 DCAF8L2P0C7V8 631 aa30.72■■■□□ 2.51
SLC6A4-204ENST00000578609 UNC13AQ9UPW8 1703 aa30.21■■■□□ 2.43
SLC6A4-204ENST00000578609 SCRIBQ14160 1630 aa30.01■■■□□ 2.39
SLC6A4-204ENST00000578609 BICRAQ9NZM4 1560 aa30■■■□□ 2.39
SLC6A4-204ENST00000578609 PABPN1Q86U42 306 aaKnown RBP eCLIP29.88■■■□□ 2.37
SLC6A4-204ENST00000578609 SHROOM4Q9ULL8 1493 aa29.76■■■□□ 2.35
SLC6A4-204ENST00000578609 DNAJC5BQ9UF47 199 aa29.24■■■□□ 2.27
SLC6A4-204ENST00000578609 EIF4G1Q04637 1599 aaKnown RBP29.18■■■□□ 2.26
SLC6A4-204ENST00000578609 CC2D2AQ9P2K1 1620 aa29.02■■■□□ 2.24
SLC6A4-204ENST00000578609 CECR2Q9BXF3 1484 aa28.85■■■□□ 2.21
SLC6A4-204ENST00000578609 SMARCA4P51532 1647 aa28.76■■■□□ 2.19
SLC6A4-204ENST00000578609 BAZ1AQ9NRL2 1556 aaPredicted RBP28.75■■■□□ 2.19
SLC6A4-204ENST00000578609 MROH2BQ7Z745 1585 aa28.57■■■□□ 2.16
SLC6A4-204ENST00000578609 ATAD2BQ9ULI0 1458 aa28.55■■■□□ 2.16
SLC6A4-204ENST00000578609 SMARCA2P51531 1590 aa28.54■■■□□ 2.16
SLC6A4-204ENST00000578609 NCAPD3P42695 1498 aa28.53■■■□□ 2.16
SLC6A4-204ENST00000578609 PEG3Q9GZU2 1588 aa28.52■■■□□ 2.16
SLC6A4-204ENST00000578609 HMGXB3Q12766 1538 aa28.44■■■□□ 2.14
SLC6A4-204ENST00000578609 BAZ1BQ9UIG0 1483 aaKnown RBP28.31■■■□□ 2.12
SLC6A4-204ENST00000578609 RSF1Q96T23 1441 aaPredicted RBP28.27■■■□□ 2.12
SLC6A4-204ENST00000578609 WIZO95785 1651 aa28.25■■■□□ 2.11
SLC6A4-204ENST00000578609 TOP2AP11388 1531 aaKnown RBP28.01■■■□□ 2.07
SLC6A4-204ENST00000578609 LAMC3Q9Y6N6 1575 aa27.77■■■□□ 2.04
SLC6A4-204ENST00000578609 NESP48681 1621 aa27.76■■■□□ 2.03
SLC6A4-204ENST00000578609 CADPSQ9ULU8 1353 aa27.67■■■□□ 2.02
SLC6A4-204ENST00000578609 CCDC88BA6NC98 1476 aa27.63■■■□□ 2.01
SLC6A4-204ENST00000578609 ERCC6Q03468 1493 aa27.59■■■□□ 2.01
SLC6A4-204ENST00000578609 CFTRP13569 1480 aa27.57■■■□□ 2
SLC6A4-204ENST00000578609 PDS5BQ9NTI5 1447 aa27.53■■■□□ 2
SLC6A4-204ENST00000578609 SUPT5HO00267 1087 aaKnown RBP27.51■■□□□ 1.99
SLC6A4-204ENST00000578609 KIF21AQ7Z4S6 1674 aa27.46■■□□□ 1.99
SLC6A4-204ENST00000578609 THOC2Q8NI27 1593 aaKnown RBP27.39■■□□□ 1.98
SLC6A4-204ENST00000578609 PRDM2Q13029 1718 aa27.38■■□□□ 1.97
SLC6A4-204ENST00000578609 FANCD2Q9BXW9 1451 aa27.37■■□□□ 1.97
SLC6A4-204ENST00000578609 CUX2O14529 1486 aa27.32■■□□□ 1.96
SLC6A4-204ENST00000578609 CEP164Q9UPV0 1460 aa27.32■■□□□ 1.96
SLC6A4-204ENST00000578609 MRC2Q9UBG0 1479 aa27.27■■□□□ 1.96
SLC6A4-204ENST00000578609 WDR62O43379 1518 aa27.21■■□□□ 1.95
SLC6A4-204ENST00000578609 URB2Q14146 1524 aaKnown RBP27.1■■□□□ 1.93
SLC6A4-204ENST00000578609 TOPBP1Q92547 1522 aa26.95■■□□□ 1.91
SLC6A4-204ENST00000578609 ABCC8Q09428 1581 aa26.95■■□□□ 1.9
SLC6A4-204ENST00000578609 DNMBPQ6XZF7 1577 aa26.95■■□□□ 1.9
SLC6A4-204ENST00000578609 CUX1P39880 1505 aa26.8■■□□□ 1.88
SLC6A4-204ENST00000578609 IFT140Q96RY7 1462 aa26.75■■□□□ 1.87
SLC6A4-204ENST00000578609 POLA1P09884 1462 aaPredicted RBP26.74■■□□□ 1.87
SLC6A4-204ENST00000578609 FGD5Q6ZNL6 1462 aa26.68■■□□□ 1.86
SLC6A4-204ENST00000578609 TARBP1Q13395 1621 aaKnown RBP26.67■■□□□ 1.86
SLC6A4-204ENST00000578609 WRNQ14191 1432 aaPredicted RBP eCLIP26.65■■□□□ 1.86
SLC6A4-204ENST00000578609 BIVM-ERCC5R4GMW8 1640 aa26.62■■□□□ 1.85
SLC6A4-204ENST00000578609 TOP2BQ02880 1626 aa26.61■■□□□ 1.85
SLC6A4-204ENST00000578609 SYNJ1O43426 1573 aa26.61■■□□□ 1.85
SLC6A4-204ENST00000578609 ZNF608Q9ULD9 1512 aaPredicted RBP26.6■■□□□ 1.85
SLC6A4-204ENST00000578609 RAD54L2Q9Y4B4 1467 aa26.58■■□□□ 1.85
SLC6A4-204ENST00000578609 SOGA1O94964 1423 aa26.57■■□□□ 1.84
SLC6A4-204ENST00000578609 EIF4G3O43432 1585 aaKnown RBP26.54■■□□□ 1.84
SLC6A4-204ENST00000578609 WDR97A6NE52 1622 aa26.51■■□□□ 1.83
SLC6A4-204ENST00000578609 ABCA10Q8WWZ4 1543 aa26.45■■□□□ 1.83
SLC6A4-204ENST00000578609 AQRO60306 1485 aaKnown RBP eCLIP26.44■■□□□ 1.82
SLC6A4-204ENST00000578609 TDRD9Q8NDG6 1382 aaKnown RBP26.4■■□□□ 1.82
SLC6A4-204ENST00000578609 ABCA5Q8WWZ7 1642 aa26.36■■□□□ 1.81
SLC6A4-204ENST00000578609 GRIN2BQ13224 1484 aa26.3■■□□□ 1.8
SLC6A4-204ENST00000578609 GAPVD1Q14C86 1478 aa26.3■■□□□ 1.8
SLC6A4-204ENST00000578609 PBRM1Q86U86 1689 aa26.26■■□□□ 1.79
SLC6A4-204ENST00000578609 SNAPC4Q5SXM2 1469 aa26.24■■□□□ 1.79
SLC6A4-204ENST00000578609 DNAJC5Q9H3Z4 198 aa26.24■■□□□ 1.79
SLC6A4-204ENST00000578609 MAGI1Q96QZ7 1491 aaPredicted RBP26.23■■□□□ 1.79
SLC6A4-204ENST00000578609 CHD1O14646 1710 aa26.15■■□□□ 1.78
SLC6A4-204ENST00000578609 ERICH3Q5RHP9 1530 aa26.14■■□□□ 1.77
SLC6A4-204ENST00000578609 SYNJ2O15056 1496 aa26.11■■□□□ 1.77
SLC6A4-204ENST00000578609 OSCARQ8IYS5 282 aa26.1■■□□□ 1.77
SLC6A4-204ENST00000578609 ADAMTS12P58397 1594 aa26.1■■□□□ 1.77
SLC6A4-204ENST00000578609 KIF27Q86VH2 1401 aa26.08■■□□□ 1.77
SLC6A4-204ENST00000578609 FHAD1B1AJZ9 1412 aa26.01■■□□□ 1.75
SLC6A4-204ENST00000578609 FBLN2P98095 1184 aa26■■□□□ 1.75
SLC6A4-204ENST00000578609 TRIM41Q8WV44 630 aa26■■□□□ 1.75
SLC6A4-204ENST00000578609 CHMP7Q8WUX9 453 aaPredicted RBP25.99■■□□□ 1.75
SLC6A4-204ENST00000578609 GRIN2AQ12879 1464 aa25.97■■□□□ 1.75
SLC6A4-204ENST00000578609 IGF1RP08069 1367 aa25.95■■□□□ 1.74
SLC6A4-204ENST00000578609 CUL7Q14999 1698 aa25.93■■□□□ 1.74
SLC6A4-204ENST00000578609 CLASP1Q7Z460 1538 aa25.93■■□□□ 1.74
SLC6A4-204ENST00000578609 NUP160Q12769 1436 aa25.87■■□□□ 1.73
SLC6A4-204ENST00000578609 RUSC2Q8N2Y8 1516 aa25.86■■□□□ 1.73
SLC6A4-204ENST00000578609 CEP170Q5SW79 1584 aa25.84■■□□□ 1.73
SLC6A4-204ENST00000578609 CHIC1Q5VXU3 224 aa25.8■■□□□ 1.72
SLC6A4-204ENST00000578609 CARMIL1Q5VZK9 1371 aa25.78■■□□□ 1.72
SLC6A4-204ENST00000578609 ARHGEF11O15085 1522 aa25.77■■□□□ 1.72
SLC6A4-204ENST00000578609 RIMBP3CA6NJZ7 1639 aa25.75■■□□□ 1.71
SLC6A4-204ENST00000578609 RIMBP3BA6NNM3 1639 aa25.75■■□□□ 1.71
SLC6A4-204ENST00000578609 RIMBP3Q9UFD9 1639 aa25.75■■□□□ 1.71
SLC6A4-204ENST00000578609 EEA1Q15075 1411 aa25.7■■□□□ 1.7
SLC6A4-204ENST00000578609 RAPGEF2Q9Y4G8 1499 aa25.67■■□□□ 1.7
SLC6A4-204ENST00000578609 SHROOM2Q13796 1616 aa25.67■■□□□ 1.7
Retrieved 100 of 20,778 RNA–protein pairs in 61.1 ms