RNA–Protein interactions for RNA: ENST00000578415.1

TSEN54-205, Transcript of tRNA splicing endonuclease subunit 54, humanhuman

TSL 3

Gene TSEN54, Length 994 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSEN54-205ENST00000578415 NISCHQ9Y2I1 1504 aa53.11■■■■■ 6.09
TSEN54-205ENST00000578415 ABCC9O60706 1549 aa47.97■■■■■ 5.27
TSEN54-205ENST00000578415 CCDC180Q9P1Z9 1646 aa47.69■■■■■ 5.22
TSEN54-205ENST00000578415 RB1CC1Q8TDY2 1594 aa45.52■■■■■ 4.88
TSEN54-205ENST00000578415 DNAJC5BQ9UF47 199 aa45.27■■■■■ 4.84
TSEN54-205ENST00000578415 NACADO15069 1562 aa45.18■■■■■ 4.82
TSEN54-205ENST00000578415 DCAF8L2P0C7V8 631 aa44.88■■■■■ 4.78
TSEN54-205ENST00000578415 PABPN1Q86U42 306 aaKnown RBP eCLIP44.66■■■■■ 4.74
TSEN54-205ENST00000578415 MYO15BQ96JP2 1530 aa44.5■■■■■ 4.71
TSEN54-205ENST00000578415 UNC13AQ9UPW8 1703 aa44.44■■■■■ 4.71
TSEN54-205ENST00000578415 BICRAQ9NZM4 1560 aa44.26■■■■■ 4.68
TSEN54-205ENST00000578415 ZCCHC6Q5VYS8 1495 aaKnown RBP43.98■■■■■ 4.63
TSEN54-205ENST00000578415 DCAF1Q9Y4B6 1507 aa43.85■■■■■ 4.61
TSEN54-205ENST00000578415 SHROOM4Q9ULL8 1493 aa43.62■■■■■ 4.57
TSEN54-205ENST00000578415 SCRIBQ14160 1630 aa43.48■■■■■ 4.55
TSEN54-205ENST00000578415 CC2D2AQ9P2K1 1620 aa43.3■■■■■ 4.52
TSEN54-205ENST00000578415 CECR2Q9BXF3 1484 aa43.25■■■■■ 4.51
TSEN54-205ENST00000578415 EIF4G1Q04637 1599 aaKnown RBP43.17■■■■■ 4.5
TSEN54-205ENST00000578415 NCAPD3P42695 1498 aa41.75■■■■■ 4.27
TSEN54-205ENST00000578415 DNAJC5Q9H3Z4 198 aa41.69■■■■■ 4.26
TSEN54-205ENST00000578415 ATAD2BQ9ULI0 1458 aa41.6■■■■■ 4.25
TSEN54-205ENST00000578415 SMARCA4P51532 1647 aa41.46■■■■■ 4.23
TSEN54-205ENST00000578415 CUX2O14529 1486 aa41.43■■■■■ 4.22
TSEN54-205ENST00000578415 SMARCA2P51531 1590 aa41.42■■■■■ 4.22
TSEN54-205ENST00000578415 ERCC6Q03468 1493 aa41.41■■■■■ 4.22
TSEN54-205ENST00000578415 HMGXB3Q12766 1538 aa41.39■■■■■ 4.22
TSEN54-205ENST00000578415 BAZ1AQ9NRL2 1556 aaPredicted RBP41.21■■■■■ 4.19
TSEN54-205ENST00000578415 NESP48681 1621 aa41.17■■■■■ 4.18
TSEN54-205ENST00000578415 BAZ1BQ9UIG0 1483 aaKnown RBP41.15■■■■■ 4.18
TSEN54-205ENST00000578415 PEG3Q9GZU2 1588 aa41.08■■■■■ 4.17
TSEN54-205ENST00000578415 MROH2BQ7Z745 1585 aa40.94■■■■■ 4.14
TSEN54-205ENST00000578415 LAMC3Q9Y6N6 1575 aa40.79■■■■■ 4.12
TSEN54-205ENST00000578415 THOC2Q8NI27 1593 aaKnown RBP40.77■■■■■ 4.12
TSEN54-205ENST00000578415 PDS5BQ9NTI5 1447 aa40.59■■■■■ 4.09
TSEN54-205ENST00000578415 KIF21AQ7Z4S6 1674 aa40.55■■■■■ 4.08
TSEN54-205ENST00000578415 CADPSQ9ULU8 1353 aa40.47■■■■■ 4.07
TSEN54-205ENST00000578415 WIZO95785 1651 aa40.39■■■■■ 4.06
TSEN54-205ENST00000578415 MRC2Q9UBG0 1479 aa40.26■■■■■ 4.04
TSEN54-205ENST00000578415 WDR62O43379 1518 aa40.17■■■■■ 4.02
TSEN54-205ENST00000578415 CEP164Q9UPV0 1460 aa40.04■■■■■ 4
TSEN54-205ENST00000578415 RSF1Q96T23 1441 aaPredicted RBP40.02■■■■■ 4
TSEN54-205ENST00000578415 FANCD2Q9BXW9 1451 aa40■■■■□ 3.99
TSEN54-205ENST00000578415 CFTRP13569 1480 aa39.97■■■■□ 3.99
TSEN54-205ENST00000578415 TOP2AP11388 1531 aaKnown RBP39.89■■■■□ 3.98
TSEN54-205ENST00000578415 TRIM41Q8WV44 630 aa39.73■■■■□ 3.95
TSEN54-205ENST00000578415 URB2Q14146 1524 aaKnown RBP39.7■■■■□ 3.95
TSEN54-205ENST00000578415 OSCARQ8IYS5 282 aa39.5■■■■□ 3.91
TSEN54-205ENST00000578415 CCDC88BA6NC98 1476 aa39.45■■■■□ 3.91
TSEN54-205ENST00000578415 PRDM2Q13029 1718 aa39.4■■■■□ 3.9
TSEN54-205ENST00000578415 IFT140Q96RY7 1462 aa39.26■■■■□ 3.88
TSEN54-205ENST00000578415 ZNF608Q9ULD9 1512 aaPredicted RBP39.25■■■■□ 3.87
TSEN54-205ENST00000578415 TOPBP1Q92547 1522 aa39.22■■■■□ 3.87
TSEN54-205ENST00000578415 ABCC8Q09428 1581 aa39.07■■■■□ 3.84
TSEN54-205ENST00000578415 DNMBPQ6XZF7 1577 aa39.03■■■■□ 3.84
TSEN54-205ENST00000578415 RIMBP3CA6NJZ7 1639 aa39■■■■□ 3.83
TSEN54-205ENST00000578415 RIMBP3BA6NNM3 1639 aa39■■■■□ 3.83
TSEN54-205ENST00000578415 RIMBP3Q9UFD9 1639 aa39■■■■□ 3.83
TSEN54-205ENST00000578415 EIF4G3O43432 1585 aaKnown RBP38.98■■■■□ 3.83
TSEN54-205ENST00000578415 TARBP1Q13395 1621 aaKnown RBP38.88■■■■□ 3.81
TSEN54-205ENST00000578415 ARHGEF11O15085 1522 aa38.88■■■■□ 3.81
TSEN54-205ENST00000578415 AQRO60306 1485 aaKnown RBP eCLIP38.86■■■■□ 3.816e-10■■■■■ 30.4
TSEN54-205ENST00000578415 POLA1P09884 1462 aaPredicted RBP38.81■■■■□ 3.8
TSEN54-205ENST00000578415 CHD1O14646 1710 aa38.69■■■■□ 3.78
TSEN54-205ENST00000578415 RAD54L2Q9Y4B4 1467 aa38.68■■■■□ 3.78
TSEN54-205ENST00000578415 SOGA1O94964 1423 aa38.62■■■■□ 3.77
TSEN54-205ENST00000578415 FBLN2P98095 1184 aa38.6■■■■□ 3.77
TSEN54-205ENST00000578415 CYB5RLQ6IPT4 315 aa38.6■■■■□ 3.77
TSEN54-205ENST00000578415 TDRD9Q8NDG6 1382 aaKnown RBP38.58■■■■□ 3.77
TSEN54-205ENST00000578415 FGD5Q6ZNL6 1462 aa38.53■■■■□ 3.76
TSEN54-205ENST00000578415 ARAP1Q96P48 1450 aa38.5■■■■□ 3.75
TSEN54-205ENST00000578415 CUX1P39880 1505 aa38.47■■■■□ 3.75
TSEN54-205ENST00000578415 SNAPC4Q5SXM2 1469 aa38.45■■■■□ 3.75
TSEN54-205ENST00000578415 WDR97A6NE52 1622 aa38.43■■■■□ 3.74
TSEN54-205ENST00000578415 MAGI1Q96QZ7 1491 aaPredicted RBP38.33■■■■□ 3.73
TSEN54-205ENST00000578415 CLASP1Q7Z460 1538 aa38.32■■■■□ 3.72
TSEN54-205ENST00000578415 GRIN2BQ13224 1484 aa38.3■■■■□ 3.72
TSEN54-205ENST00000578415 CHMP7Q8WUX9 453 aaPredicted RBP38.29■■■■□ 3.72
TSEN54-205ENST00000578415 SYNJ1O43426 1573 aa38.22■■■■□ 3.71
TSEN54-205ENST00000578415 TRHP20396 242 aaPredicted RBP38.21■■■■□ 3.71
TSEN54-205ENST00000578415 SYNJ2O15056 1496 aa38.21■■■■□ 3.71
TSEN54-205ENST00000578415 GAPVD1Q14C86 1478 aa38.14■■■■□ 3.7
TSEN54-205ENST00000578415 ABCA10Q8WWZ4 1543 aa38.08■■■■□ 3.69
TSEN54-205ENST00000578415 PBRM1Q86U86 1689 aa38.07■■■■□ 3.68
TSEN54-205ENST00000578415 ABCA5Q8WWZ7 1642 aa38.03■■■■□ 3.68
TSEN54-205ENST00000578415 SUPT5HO00267 1087 aaKnown RBP38.03■■■■□ 3.68
TSEN54-205ENST00000578415 WRNQ14191 1432 aaPredicted RBP eCLIP37.87■■■■□ 3.65
TSEN54-205ENST00000578415 GRIN2AQ12879 1464 aa37.82■■■■□ 3.64
TSEN54-205ENST00000578415 ADAMTS12P58397 1594 aa37.76■■■■□ 3.63
TSEN54-205ENST00000578415 TOP2BQ02880 1626 aa37.76■■■■□ 3.63
TSEN54-205ENST00000578415 BIVM-ERCC5R4GMW8 1640 aa37.75■■■■□ 3.63
TSEN54-205ENST00000578415 NUP160Q12769 1436 aa37.73■■■■□ 3.63
TSEN54-205ENST00000578415 ERCC6L2Q5T890 1561 aa37.72■■■■□ 3.63
TSEN54-205ENST00000578415 CEP170Q5SW79 1584 aa37.7■■■■□ 3.63
TSEN54-205ENST00000578415 FHAD1B1AJZ9 1412 aa37.65■■■■□ 3.62
TSEN54-205ENST00000578415 ERICH3Q5RHP9 1530 aa37.57■■■■□ 3.61
TSEN54-205ENST00000578415 SHROOM2Q13796 1616 aa37.54■■■■□ 3.6
TSEN54-205ENST00000578415 PRG4Q92954 1404 aaPredicted RBP37.36■■■■□ 3.57
TSEN54-205ENST00000578415 JPH4Q96JJ6 628 aa37.31■■■■□ 3.56
TSEN54-205ENST00000578415 AEBP2Q6ZN18 517 aaPredicted RBP37.23■■■■□ 3.55
TSEN54-205ENST00000578415 RUSC2Q8N2Y8 1516 aa37.23■■■■□ 3.55
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms