RNA–Protein interactions for RNA: ENST00000578329.1

PPP4R1-209, Transcript of protein phosphatase 4 regulatory subunit 1, humanhuman

TSL 3

Gene PPP4R1, Length 350 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R1-209ENST00000578329 NISCHQ9Y2I1 1504 aa11.5□□□□□ -0.57
PPP4R1-209ENST00000578329 ABCC9O60706 1549 aa10.28□□□□□ -0.76
PPP4R1-209ENST00000578329 CCDC180Q9P1Z9 1646 aa10.26□□□□□ -0.77
PPP4R1-209ENST00000578329 DNAJC5BQ9UF47 199 aa9.78□□□□□ -0.84
PPP4R1-209ENST00000578329 RB1CC1Q8TDY2 1594 aa9.72□□□□□ -0.85
PPP4R1-209ENST00000578329 NACADO15069 1562 aa9.68□□□□□ -0.86
PPP4R1-209ENST00000578329 UNC13AQ9UPW8 1703 aa9.63□□□□□ -0.87
PPP4R1-209ENST00000578329 BICRAQ9NZM4 1560 aa9.61□□□□□ -0.87
PPP4R1-209ENST00000578329 MYO15BQ96JP2 1530 aa9.59□□□□□ -0.87
PPP4R1-209ENST00000578329 PABPN1Q86U42 306 aaKnown RBP eCLIP9.58□□□□□ -0.88
PPP4R1-209ENST00000578329 DCAF8L2P0C7V8 631 aa9.55□□□□□ -0.88
PPP4R1-209ENST00000578329 ZCCHC6Q5VYS8 1495 aaKnown RBP9.53□□□□□ -0.88
PPP4R1-209ENST00000578329 DCAF1Q9Y4B6 1507 aa9.48□□□□□ -0.89
PPP4R1-209ENST00000578329 SCRIBQ14160 1630 aa9.37□□□□□ -0.91
PPP4R1-209ENST00000578329 SHROOM4Q9ULL8 1493 aa9.31□□□□□ -0.92
PPP4R1-209ENST00000578329 CC2D2AQ9P2K1 1620 aa9.3□□□□□ -0.92
PPP4R1-209ENST00000578329 EIF4G1Q04637 1599 aaKnown RBP9.28□□□□□ -0.92
PPP4R1-209ENST00000578329 CECR2Q9BXF3 1484 aa9.24□□□□□ -0.93
PPP4R1-209ENST00000578329 POTEDQ86YR6 584 aa9.02□□□□□ -0.97
PPP4R1-209ENST00000578329 NCAPD3P42695 1498 aa9□□□□□ -0.97
PPP4R1-209ENST00000578329 ATAD2BQ9ULI0 1458 aa8.97□□□□□ -0.97
PPP4R1-209ENST00000578329 SMARCA4P51532 1647 aa8.95□□□□□ -0.98
PPP4R1-209ENST00000578329 NESP48681 1621 aa8.9□□□□□ -0.99
PPP4R1-209ENST00000578329 MROH2BQ7Z745 1585 aa8.9□□□□□ -0.99
PPP4R1-209ENST00000578329 PEG3Q9GZU2 1588 aa8.9□□□□□ -0.99
PPP4R1-209ENST00000578329 HMGXB3Q12766 1538 aa8.9□□□□□ -0.99
PPP4R1-209ENST00000578329 SMARCA2P51531 1590 aa8.86□□□□□ -0.99
PPP4R1-209ENST00000578329 BAZ1AQ9NRL2 1556 aaPredicted RBP8.86□□□□□ -0.99
PPP4R1-209ENST00000578329 DNAJC5Q9H3Z4 198 aa8.85□□□□□ -0.99
PPP4R1-209ENST00000578329 BAZ1BQ9UIG0 1483 aaKnown RBP8.82□□□□□ -1
PPP4R1-209ENST00000578329 CUX2O14529 1486 aa8.81□□□□□ -1
PPP4R1-209ENST00000578329 THOC2Q8NI27 1593 aaKnown RBP8.78□□□□□ -1
PPP4R1-209ENST00000578329 WIZO95785 1651 aa8.77□□□□□ -1.01
PPP4R1-209ENST00000578329 ERCC6Q03468 1493 aa8.77□□□□□ -1.01
PPP4R1-209ENST00000578329 KIF21AQ7Z4S6 1674 aa8.74□□□□□ -1.01
PPP4R1-209ENST00000578329 LAMC3Q9Y6N6 1575 aa8.73□□□□□ -1.01
PPP4R1-209ENST00000578329 RSF1Q96T23 1441 aaPredicted RBP8.7□□□□□ -1.02
PPP4R1-209ENST00000578329 CADPSQ9ULU8 1353 aa8.69□□□□□ -1.02
PPP4R1-209ENST00000578329 WDR62O43379 1518 aa8.64□□□□□ -1.03
PPP4R1-209ENST00000578329 PDS5BQ9NTI5 1447 aa8.63□□□□□ -1.03
PPP4R1-209ENST00000578329 CFTRP13569 1480 aa8.62□□□□□ -1.03
PPP4R1-209ENST00000578329 MRC2Q9UBG0 1479 aa8.62□□□□□ -1.03
PPP4R1-209ENST00000578329 TOP2AP11388 1531 aaKnown RBP8.61□□□□□ -1.03
PPP4R1-209ENST00000578329 URB2Q14146 1524 aaKnown RBP8.59□□□□□ -1.03
PPP4R1-209ENST00000578329 FANCD2Q9BXW9 1451 aa8.58□□□□□ -1.04
PPP4R1-209ENST00000578329 CEP164Q9UPV0 1460 aa8.56□□□□□ -1.04
PPP4R1-209ENST00000578329 CCDC88BA6NC98 1476 aa8.55□□□□□ -1.04
PPP4R1-209ENST00000578329 PRDM2Q13029 1718 aa8.49□□□□□ -1.05
PPP4R1-209ENST00000578329 ZNF608Q9ULD9 1512 aaPredicted RBP8.48□□□□□ -1.05
PPP4R1-209ENST00000578329 TOPBP1Q92547 1522 aa8.45□□□□□ -1.06
PPP4R1-209ENST00000578329 TARBP1Q13395 1621 aaKnown RBP8.41□□□□□ -1.06
PPP4R1-209ENST00000578329 DNMBPQ6XZF7 1577 aa8.39□□□□□ -1.07
PPP4R1-209ENST00000578329 IFT140Q96RY7 1462 aa8.39□□□□□ -1.07
PPP4R1-209ENST00000578329 EIF4G3O43432 1585 aaKnown RBP8.38□□□□□ -1.07
PPP4R1-209ENST00000578329 OSCARQ8IYS5 282 aa8.37□□□□□ -1.07
PPP4R1-209ENST00000578329 TRIM41Q8WV44 630 aa8.37□□□□□ -1.07
PPP4R1-209ENST00000578329 AQRO60306 1485 aaKnown RBP eCLIP8.37□□□□□ -1.071e-6■■■■■ 33.4
PPP4R1-209ENST00000578329 POLA1P09884 1462 aaPredicted RBP8.37□□□□□ -1.07
PPP4R1-209ENST00000578329 RAD54L2Q9Y4B4 1467 aa8.36□□□□□ -1.07
PPP4R1-209ENST00000578329 RIMBP3CA6NJZ7 1639 aa8.35□□□□□ -1.07
PPP4R1-209ENST00000578329 RIMBP3BA6NNM3 1639 aa8.35□□□□□ -1.07
PPP4R1-209ENST00000578329 RIMBP3Q9UFD9 1639 aa8.35□□□□□ -1.07
PPP4R1-209ENST00000578329 CUX1P39880 1505 aa8.34□□□□□ -1.07
PPP4R1-209ENST00000578329 ABCC8Q09428 1581 aa8.32□□□□□ -1.08
PPP4R1-209ENST00000578329 ARHGEF11O15085 1522 aa8.32□□□□□ -1.08
PPP4R1-209ENST00000578329 CHD1O14646 1710 aa8.32□□□□□ -1.08
PPP4R1-209ENST00000578329 TDRD9Q8NDG6 1382 aaKnown RBP8.31□□□□□ -1.08
PPP4R1-209ENST00000578329 FGD5Q6ZNL6 1462 aa8.31□□□□□ -1.08
PPP4R1-209ENST00000578329 WDR97A6NE52 1622 aa8.29□□□□□ -1.08
PPP4R1-209ENST00000578329 SOGA1O94964 1423 aa8.29□□□□□ -1.08
PPP4R1-209ENST00000578329 ARAP1Q96P48 1450 aa8.27□□□□□ -1.09
PPP4R1-209ENST00000578329 CLASP1Q7Z460 1538 aa8.26□□□□□ -1.09
PPP4R1-209ENST00000578329 SNAPC4Q5SXM2 1469 aa8.26□□□□□ -1.09
PPP4R1-209ENST00000578329 ABCA5Q8WWZ7 1642 aa8.22□□□□□ -1.09
PPP4R1-209ENST00000578329 ABCA10Q8WWZ4 1543 aa8.21□□□□□ -1.1
PPP4R1-209ENST00000578329 GRIN2BQ13224 1484 aa8.2□□□□□ -1.1
PPP4R1-209ENST00000578329 SYNJ1O43426 1573 aa8.2□□□□□ -1.1
PPP4R1-209ENST00000578329 SUPT5HO00267 1087 aaKnown RBP8.2□□□□□ -1.1
PPP4R1-209ENST00000578329 CYB5RLQ6IPT4 315 aa8.2□□□□□ -1.1
PPP4R1-209ENST00000578329 MAGI1Q96QZ7 1491 aaPredicted RBP8.19□□□□□ -1.1
PPP4R1-209ENST00000578329 PBRM1Q86U86 1689 aa8.19□□□□□ -1.1
PPP4R1-209ENST00000578329 SYNJ2O15056 1496 aa8.19□□□□□ -1.1
PPP4R1-209ENST00000578329 GAPVD1Q14C86 1478 aa8.19□□□□□ -1.1
PPP4R1-209ENST00000578329 ERCC6L2Q5T890 1561 aa8.18□□□□□ -1.1
PPP4R1-209ENST00000578329 FBLN2P98095 1184 aa8.18□□□□□ -1.1
PPP4R1-209ENST00000578329 BIVM-ERCC5R4GMW8 1640 aa8.18□□□□□ -1.1
PPP4R1-209ENST00000578329 TOP2BQ02880 1626 aa8.17□□□□□ -1.1
PPP4R1-209ENST00000578329 ADAMTS12P58397 1594 aa8.14□□□□□ -1.11
PPP4R1-209ENST00000578329 CEP170Q5SW79 1584 aa8.14□□□□□ -1.11
PPP4R1-209ENST00000578329 NUP160Q12769 1436 aa8.13□□□□□ -1.11
PPP4R1-209ENST00000578329 WRNQ14191 1432 aaPredicted RBP eCLIP8.13□□□□□ -1.11
PPP4R1-209ENST00000578329 CHMP7Q8WUX9 453 aaPredicted RBP8.13□□□□□ -1.11
PPP4R1-209ENST00000578329 GRIN2AQ12879 1464 aa8.13□□□□□ -1.11
PPP4R1-209ENST00000578329 SHROOM2Q13796 1616 aa8.11□□□□□ -1.11
PPP4R1-209ENST00000578329 ERICH3Q5RHP9 1530 aa8.08□□□□□ -1.12
PPP4R1-209ENST00000578329 FHAD1B1AJZ9 1412 aa8.07□□□□□ -1.12
PPP4R1-209ENST00000578329 RUSC2Q8N2Y8 1516 aa8.03□□□□□ -1.12
PPP4R1-209ENST00000578329 IGF1RP08069 1367 aa8.03□□□□□ -1.12
PPP4R1-209ENST00000578329 TRHP20396 242 aaPredicted RBP8.02□□□□□ -1.13
PPP4R1-209ENST00000578329 PRG4Q92954 1404 aaPredicted RBP8.01□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 93.7 ms