RNA–Protein interactions for RNA: ENST00000577779.1

PPP4R1-206, Transcript of protein phosphatase 4 regulatory subunit 1, humanhuman

TSL 2

Gene PPP4R1, Length 481 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R1-206ENST00000577779 NISCHQ9Y2I1 1504 aa36.35■■■■□ 3.41
PPP4R1-206ENST00000577779 ABCC9O60706 1549 aa33.72■■■□□ 2.99
PPP4R1-206ENST00000577779 CCDC180Q9P1Z9 1646 aa32.95■■■□□ 2.87
PPP4R1-206ENST00000577779 DNAJC5BQ9UF47 199 aa32.28■■■□□ 2.76
PPP4R1-206ENST00000577779 RB1CC1Q8TDY2 1594 aa31.76■■■□□ 2.67
PPP4R1-206ENST00000577779 NACADO15069 1562 aa31.34■■■□□ 2.61
PPP4R1-206ENST00000577779 PABPN1Q86U42 306 aaKnown RBP eCLIP31.28■■■□□ 2.6
PPP4R1-206ENST00000577779 DCAF8L2P0C7V8 631 aa31.08■■■□□ 2.57
PPP4R1-206ENST00000577779 UNC13AQ9UPW8 1703 aa31.02■■■□□ 2.56
PPP4R1-206ENST00000577779 BICRAQ9NZM4 1560 aa30.84■■■□□ 2.53
PPP4R1-206ENST00000577779 MYO15BQ96JP2 1530 aa30.63■■■□□ 2.49
PPP4R1-206ENST00000577779 CECR2Q9BXF3 1484 aa30.45■■■□□ 2.47
PPP4R1-206ENST00000577779 CC2D2AQ9P2K1 1620 aa30.41■■■□□ 2.46
PPP4R1-206ENST00000577779 SHROOM4Q9ULL8 1493 aa30.35■■■□□ 2.45
PPP4R1-206ENST00000577779 DNAJC5Q9H3Z4 198 aa30.21■■■□□ 2.43
PPP4R1-206ENST00000577779 EIF4G1Q04637 1599 aaKnown RBP30.15■■■□□ 2.42
PPP4R1-206ENST00000577779 SCRIBQ14160 1630 aa30.01■■■□□ 2.39
PPP4R1-206ENST00000577779 DCAF1Q9Y4B6 1507 aa29.96■■■□□ 2.39
PPP4R1-206ENST00000577779 ZCCHC6Q5VYS8 1495 aaKnown RBP29.96■■■□□ 2.39
PPP4R1-206ENST00000577779 CUX2O14529 1486 aa29.36■■■□□ 2.29
PPP4R1-206ENST00000577779 ERCC6Q03468 1493 aa29.19■■■□□ 2.26
PPP4R1-206ENST00000577779 AEBP2Q6ZN18 517 aaPredicted RBP28.95■■■□□ 2.22
PPP4R1-206ENST00000577779 NCAPD3P42695 1498 aa28.93■■■□□ 2.22
PPP4R1-206ENST00000577779 ATAD2BQ9ULI0 1458 aa28.74■■■□□ 2.19
PPP4R1-206ENST00000577779 NESP48681 1621 aa28.74■■■□□ 2.19
PPP4R1-206ENST00000577779 HMGXB3Q12766 1538 aa28.65■■■□□ 2.18
PPP4R1-206ENST00000577779 SMARCA2P51531 1590 aa28.64■■■□□ 2.18
PPP4R1-206ENST00000577779 TRIM41Q8WV44 630 aa28.62■■■□□ 2.17
PPP4R1-206ENST00000577779 THOC2Q8NI27 1593 aaKnown RBP28.59■■■□□ 2.17
PPP4R1-206ENST00000577779 SMARCA4P51532 1647 aa28.53■■■□□ 2.16
PPP4R1-206ENST00000577779 BAZ1BQ9UIG0 1483 aaKnown RBP28.45■■■□□ 2.14
PPP4R1-206ENST00000577779 LAMC3Q9Y6N6 1575 aa28.41■■■□□ 2.14
PPP4R1-206ENST00000577779 KIF21AQ7Z4S6 1674 aa28.35■■■□□ 2.13
PPP4R1-206ENST00000577779 PDS5BQ9NTI5 1447 aa28.29■■■□□ 2.12
PPP4R1-206ENST00000577779 BAZ1AQ9NRL2 1556 aaPredicted RBP28.28■■■□□ 2.12
PPP4R1-206ENST00000577779 PEG3Q9GZU2 1588 aa28.24■■■□□ 2.11
PPP4R1-206ENST00000577779 CHIC1Q5VXU3 224 aa28.11■■■□□ 2.09
PPP4R1-206ENST00000577779 MRC2Q9UBG0 1479 aa28.08■■■□□ 2.09
PPP4R1-206ENST00000577779 WDR62O43379 1518 aa28.03■■■□□ 2.08
PPP4R1-206ENST00000577779 CADPSQ9ULU8 1353 aa28.03■■■□□ 2.08
PPP4R1-206ENST00000577779 MROH2BQ7Z745 1585 aa28.01■■■□□ 2.07
PPP4R1-206ENST00000577779 OSCARQ8IYS5 282 aa27.91■■■□□ 2.06
PPP4R1-206ENST00000577779 CEP164Q9UPV0 1460 aa27.83■■■□□ 2.05
PPP4R1-206ENST00000577779 FANCD2Q9BXW9 1451 aa27.73■■■□□ 2.03
PPP4R1-206ENST00000577779 WIZO95785 1651 aa27.64■■■□□ 2.02
PPP4R1-206ENST00000577779 RIMBP3CA6NJZ7 1639 aa27.63■■■□□ 2.01
PPP4R1-206ENST00000577779 RIMBP3BA6NNM3 1639 aa27.63■■■□□ 2.01
PPP4R1-206ENST00000577779 RIMBP3Q9UFD9 1639 aa27.63■■■□□ 2.01
PPP4R1-206ENST00000577779 CFTRP13569 1480 aa27.55■■■□□ 2
PPP4R1-206ENST00000577779 URB2Q14146 1524 aaKnown RBP27.54■■■□□ 2
PPP4R1-206ENST00000577779 ARHGEF11O15085 1522 aa27.46■■□□□ 1.99
PPP4R1-206ENST00000577779 ZNF608Q9ULD9 1512 aaPredicted RBP27.33■■□□□ 1.97
PPP4R1-206ENST00000577779 CYB5RLQ6IPT4 315 aa27.32■■□□□ 1.96
PPP4R1-206ENST00000577779 IFT140Q96RY7 1462 aa27.3■■□□□ 1.96
PPP4R1-206ENST00000577779 TRHP20396 242 aaPredicted RBP27.29■■□□□ 1.96
PPP4R1-206ENST00000577779 TOP2AP11388 1531 aaKnown RBP27.24■■□□□ 1.95
PPP4R1-206ENST00000577779 PRDM2Q13029 1718 aa27.21■■□□□ 1.95
PPP4R1-206ENST00000577779 RSF1Q96T23 1441 aaPredicted RBP27.16■■□□□ 1.94
PPP4R1-206ENST00000577779 EIF4G3O43432 1585 aaKnown RBP27.14■■□□□ 1.94
PPP4R1-206ENST00000577779 ARAP1Q96P48 1450 aa27.13■■□□□ 1.93
PPP4R1-206ENST00000577779 TOPBP1Q92547 1522 aa27.11■■□□□ 1.93
PPP4R1-206ENST00000577779 CHD1O14646 1710 aa27.09■■□□□ 1.93
PPP4R1-206ENST00000577779 FBLN2P98095 1184 aa27.01■■□□□ 1.91
PPP4R1-206ENST00000577779 ABCC8Q09428 1581 aa27■■□□□ 1.91
PPP4R1-206ENST00000577779 AQRO60306 1485 aaKnown RBP eCLIP27■■□□□ 1.917e-12■■□□□ 13.1
PPP4R1-206ENST00000577779 DNMBPQ6XZF7 1577 aa26.94■■□□□ 1.9
PPP4R1-206ENST00000577779 CCDC88BA6NC98 1476 aa26.93■■□□□ 1.9
PPP4R1-206ENST00000577779 TARBP1Q13395 1621 aaKnown RBP26.93■■□□□ 1.9
PPP4R1-206ENST00000577779 POLA1P09884 1462 aaPredicted RBP26.79■■□□□ 1.88
PPP4R1-206ENST00000577779 CLASP1Q7Z460 1538 aa26.75■■□□□ 1.87
PPP4R1-206ENST00000577779 TDRD9Q8NDG6 1382 aaKnown RBP26.71■■□□□ 1.87
PPP4R1-206ENST00000577779 RAD54L2Q9Y4B4 1467 aa26.7■■□□□ 1.87
PPP4R1-206ENST00000577779 SNAPC4Q5SXM2 1469 aa26.69■■□□□ 1.86
PPP4R1-206ENST00000577779 SYNJ1O43426 1573 aa26.67■■□□□ 1.86
PPP4R1-206ENST00000577779 CHMP7Q8WUX9 453 aaPredicted RBP26.66■■□□□ 1.86
PPP4R1-206ENST00000577779 SOGA1O94964 1423 aa26.65■■□□□ 1.86
PPP4R1-206ENST00000577779 WDR97A6NE52 1622 aa26.59■■□□□ 1.85
PPP4R1-206ENST00000577779 MAGI1Q96QZ7 1491 aaPredicted RBP26.59■■□□□ 1.85
PPP4R1-206ENST00000577779 GAPVD1Q14C86 1478 aa26.54■■□□□ 1.84
PPP4R1-206ENST00000577779 SYNJ2O15056 1496 aa26.51■■□□□ 1.83
PPP4R1-206ENST00000577779 GRIN2BQ13224 1484 aa26.51■■□□□ 1.83
PPP4R1-206ENST00000577779 FGD5Q6ZNL6 1462 aa26.51■■□□□ 1.83
PPP4R1-206ENST00000577779 CUX1P39880 1505 aa26.36■■□□□ 1.81
PPP4R1-206ENST00000577779 PBRM1Q86U86 1689 aa26.35■■□□□ 1.81
PPP4R1-206ENST00000577779 ERCC6L2Q5T890 1561 aa26.28■■□□□ 1.8
PPP4R1-206ENST00000577779 ABCA5Q8WWZ7 1642 aa26.19■■□□□ 1.78
PPP4R1-206ENST00000577779 CEP170Q5SW79 1584 aa26.17■■□□□ 1.78
PPP4R1-206ENST00000577779 GRIN2AQ12879 1464 aa26.17■■□□□ 1.78
PPP4R1-206ENST00000577779 KIF13AQ9H1H9 1805 aa26.16■■□□□ 1.78
PPP4R1-206ENST00000577779 ABCA10Q8WWZ4 1543 aa26.16■■□□□ 1.78
PPP4R1-206ENST00000577779 NUP160Q12769 1436 aa26.09■■□□□ 1.77
PPP4R1-206ENST00000577779 SHROOM2Q13796 1616 aa26.06■■□□□ 1.76
PPP4R1-206ENST00000577779 ADAMTS12P58397 1594 aa26.06■■□□□ 1.76
PPP4R1-206ENST00000577779 FAM69CQ0P6D2 419 aa25.96■■□□□ 1.75
PPP4R1-206ENST00000577779 FHAD1B1AJZ9 1412 aa25.95■■□□□ 1.74
PPP4R1-206ENST00000577779 ILDR1Q86SU0 546 aaPredicted RBP25.93■■□□□ 1.74
PPP4R1-206ENST00000577779 PRG4Q92954 1404 aaPredicted RBP25.93■■□□□ 1.74
PPP4R1-206ENST00000577779 ABCC10Q5T3U5 1492 aa25.92■■□□□ 1.74
PPP4R1-206ENST00000577779 WRNQ14191 1432 aaPredicted RBP eCLIP25.92■■□□□ 1.74
PPP4R1-206ENST00000577779 KDM4FA0A1W2PPD8 638 aa25.9■■□□□ 1.74
Retrieved 100 of 20,778 RNA–protein pairs in 128.9 ms