RNA–Protein interactions for RNA: ENST00000577725.1

CRLF3-202, Transcript of cytokine receptor like factor 3, humanhuman

TSL 5

Gene CRLF3, Length 613 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CRLF3-202ENST00000577725 NISCHQ9Y2I1 1504 aa23.5■■□□□ 1.35
CRLF3-202ENST00000577725 ABCC9O60706 1549 aa22.51■■□□□ 1.19
CRLF3-202ENST00000577725 DNAJC5BQ9UF47 199 aa22.02■■□□□ 1.12
CRLF3-202ENST00000577725 CCDC180Q9P1Z9 1646 aa21.48■■□□□ 1.03
CRLF3-202ENST00000577725 DNAJC5Q9H3Z4 198 aa21■□□□□ 0.95
CRLF3-202ENST00000577725 RB1CC1Q8TDY2 1594 aa20.98■□□□□ 0.95
CRLF3-202ENST00000577725 PABPN1Q86U42 306 aaKnown RBP eCLIP20.81■□□□□ 0.92
CRLF3-202ENST00000577725 NACADO15069 1562 aa20.6■□□□□ 0.89
CRLF3-202ENST00000577725 CECR2Q9BXF3 1484 aa20.41■□□□□ 0.86
CRLF3-202ENST00000577725 BICRAQ9NZM4 1560 aa20.38■□□□□ 0.85
CRLF3-202ENST00000577725 UNC13AQ9UPW8 1703 aa20.36■□□□□ 0.85
CRLF3-202ENST00000577725 DCAF8L2P0C7V8 631 aa20.29■□□□□ 0.84
CRLF3-202ENST00000577725 CC2D2AQ9P2K1 1620 aa20.26■□□□□ 0.83
CRLF3-202ENST00000577725 SHROOM4Q9ULL8 1493 aa20.08■□□□□ 0.81
CRLF3-202ENST00000577725 MYO15BQ96JP2 1530 aa20.01■□□□□ 0.79
CRLF3-202ENST00000577725 EIF4G1Q04637 1599 aaKnown RBP19.99■□□□□ 0.79
CRLF3-202ENST00000577725 CUX2O14529 1486 aa19.86■□□□□ 0.77
CRLF3-202ENST00000577725 TRIM41Q8WV44 630 aa19.64■□□□□ 0.73
CRLF3-202ENST00000577725 ERCC6Q03468 1493 aa19.54■□□□□ 0.72
CRLF3-202ENST00000577725 SCRIBQ14160 1630 aa19.53■□□□□ 0.72
CRLF3-202ENST00000577725 ZCCHC6Q5VYS8 1495 aaKnown RBP19.41■□□□□ 0.7
CRLF3-202ENST00000577725 DCAF1Q9Y4B6 1507 aa19.37■□□□□ 0.69
CRLF3-202ENST00000577725 NCAPD3P42695 1498 aa19.05■□□□□ 0.64
CRLF3-202ENST00000577725 NESP48681 1621 aa19.03■□□□□ 0.64
CRLF3-202ENST00000577725 THOC2Q8NI27 1593 aaKnown RBP19.03■□□□□ 0.64
CRLF3-202ENST00000577725 SMARCA2P51531 1590 aa18.85■□□□□ 0.61
CRLF3-202ENST00000577725 ATAD2BQ9ULI0 1458 aa18.84■□□□□ 0.61
CRLF3-202ENST00000577725 CHIC1Q5VXU3 224 aa18.83■□□□□ 0.6
CRLF3-202ENST00000577725 HMGXB3Q12766 1538 aa18.79■□□□□ 0.6
CRLF3-202ENST00000577725 OSCARQ8IYS5 282 aa18.79■□□□□ 0.6
CRLF3-202ENST00000577725 AEBP2Q6ZN18 517 aaPredicted RBP18.76■□□□□ 0.59
CRLF3-202ENST00000577725 LAMC3Q9Y6N6 1575 aa18.76■□□□□ 0.59
CRLF3-202ENST00000577725 BAZ1AQ9NRL2 1556 aaPredicted RBP18.74■□□□□ 0.59
CRLF3-202ENST00000577725 PDS5BQ9NTI5 1447 aa18.73■□□□□ 0.59
CRLF3-202ENST00000577725 KIF21AQ7Z4S6 1674 aa18.69■□□□□ 0.58
CRLF3-202ENST00000577725 MRC2Q9UBG0 1479 aa18.6■□□□□ 0.57
CRLF3-202ENST00000577725 BAZ1BQ9UIG0 1483 aaKnown RBP18.6■□□□□ 0.57
CRLF3-202ENST00000577725 RIMBP3CA6NJZ7 1639 aa18.58■□□□□ 0.56
CRLF3-202ENST00000577725 RIMBP3BA6NNM3 1639 aa18.58■□□□□ 0.56
CRLF3-202ENST00000577725 RIMBP3Q9UFD9 1639 aa18.58■□□□□ 0.56
CRLF3-202ENST00000577725 WDR62O43379 1518 aa18.58■□□□□ 0.56
CRLF3-202ENST00000577725 TRHP20396 242 aaPredicted RBP18.54■□□□□ 0.56
CRLF3-202ENST00000577725 SMARCA4P51532 1647 aa18.52■□□□□ 0.55
CRLF3-202ENST00000577725 ARHGEF11O15085 1522 aa18.46■□□□□ 0.55
CRLF3-202ENST00000577725 CADPSQ9ULU8 1353 aa18.43■□□□□ 0.54
CRLF3-202ENST00000577725 CYB5RLQ6IPT4 315 aa18.4■□□□□ 0.54
CRLF3-202ENST00000577725 PEG3Q9GZU2 1588 aa18.38■□□□□ 0.53
CRLF3-202ENST00000577725 CEP164Q9UPV0 1460 aa18.32■□□□□ 0.52
CRLF3-202ENST00000577725 ARAP1Q96P48 1450 aa18.2■□□□□ 0.5
CRLF3-202ENST00000577725 FANCD2Q9BXW9 1451 aa18.2■□□□□ 0.5
CRLF3-202ENST00000577725 ILDR1Q86SU0 546 aaPredicted RBP18.11■□□□□ 0.49
CRLF3-202ENST00000577725 URB2Q14146 1524 aaKnown RBP18.1■□□□□ 0.49
CRLF3-202ENST00000577725 MROH2BQ7Z745 1585 aa18.08■□□□□ 0.48
CRLF3-202ENST00000577725 RSF1Q96T23 1441 aaPredicted RBP18.06■□□□□ 0.48
CRLF3-202ENST00000577725 ZNF608Q9ULD9 1512 aaPredicted RBP18.04■□□□□ 0.48
CRLF3-202ENST00000577725 SUPT5HO00267 1087 aaKnown RBP18.01■□□□□ 0.47
CRLF3-202ENST00000577725 CFTRP13569 1480 aa18■□□□□ 0.47
CRLF3-202ENST00000577725 IFT140Q96RY7 1462 aa18■□□□□ 0.47
CRLF3-202ENST00000577725 EIF4G3O43432 1585 aaKnown RBP17.87■□□□□ 0.45
CRLF3-202ENST00000577725 CHD1O14646 1710 aa17.87■□□□□ 0.45
CRLF3-202ENST00000577725 FBLN2P98095 1184 aa17.87■□□□□ 0.45
CRLF3-202ENST00000577725 WIZO95785 1651 aa17.79■□□□□ 0.44
CRLF3-202ENST00000577725 AQRO60306 1485 aaKnown RBP eCLIP17.76■□□□□ 0.43
CRLF3-202ENST00000577725 TOPBP1Q92547 1522 aa17.73■□□□□ 0.43
CRLF3-202ENST00000577725 CLASP1Q7Z460 1538 aa17.72■□□□□ 0.43
CRLF3-202ENST00000577725 ABCC8Q09428 1581 aa17.66■□□□□ 0.42
CRLF3-202ENST00000577725 GAPVD1Q14C86 1478 aa17.64■□□□□ 0.41
CRLF3-202ENST00000577725 SYNJ1O43426 1573 aa17.62■□□□□ 0.41
CRLF3-202ENST00000577725 TARBP1Q13395 1621 aaKnown RBP17.62■□□□□ 0.41
CRLF3-202ENST00000577725 KDM4FA0A1W2PPD8 638 aa17.61■□□□□ 0.41
CRLF3-202ENST00000577725 PRDM2Q13029 1718 aa17.59■□□□□ 0.41
CRLF3-202ENST00000577725 CHMP7Q8WUX9 453 aaPredicted RBP17.59■□□□□ 0.41
CRLF3-202ENST00000577725 DNMBPQ6XZF7 1577 aa17.57■□□□□ 0.4
CRLF3-202ENST00000577725 TOP2AP11388 1531 aaKnown RBP17.56■□□□□ 0.4
CRLF3-202ENST00000577725 SNAPC4Q5SXM2 1469 aa17.56■□□□□ 0.4
CRLF3-202ENST00000577725 TDRD9Q8NDG6 1382 aaKnown RBP17.51■□□□□ 0.39
CRLF3-202ENST00000577725 POLA1P09884 1462 aaPredicted RBP17.5■□□□□ 0.39
CRLF3-202ENST00000577725 MAGI1Q96QZ7 1491 aaPredicted RBP17.48■□□□□ 0.39
CRLF3-202ENST00000577725 SYNJ2O15056 1496 aa17.44■□□□□ 0.38
CRLF3-202ENST00000577725 RAD54L2Q9Y4B4 1467 aa17.44■□□□□ 0.38
CRLF3-202ENST00000577725 SOGA1O94964 1423 aa17.41■□□□□ 0.38
CRLF3-202ENST00000577725 WDR97A6NE52 1622 aa17.41■□□□□ 0.38
CRLF3-202ENST00000577725 KIF13AQ9H1H9 1805 aa17.4■□□□□ 0.38
CRLF3-202ENST00000577725 CCDC88BA6NC98 1476 aa17.38■□□□□ 0.37
CRLF3-202ENST00000577725 GRIN2BQ13224 1484 aa17.38■□□□□ 0.37
CRLF3-202ENST00000577725 ERCC6L2Q5T890 1561 aa17.37■□□□□ 0.37
CRLF3-202ENST00000577725 FBXO41Q8TF61 875 aa17.35■□□□□ 0.37
CRLF3-202ENST00000577725 FAM69CQ0P6D2 419 aa17.33■□□□□ 0.36
CRLF3-202ENST00000577725 KDM6BO15054 1643 aa17.3■□□□□ 0.36
CRLF3-202ENST00000577725 HECW2Q9P2P5 1572 aa17.29■□□□□ 0.36
CRLF3-202ENST00000577725 ABCC10Q5T3U5 1492 aa17.29■□□□□ 0.36
CRLF3-202ENST00000577725 FGD5Q6ZNL6 1462 aa17.24■□□□□ 0.35
CRLF3-202ENST00000577725 CEP170Q5SW79 1584 aa17.23■□□□□ 0.35
CRLF3-202ENST00000577725 ADGRL1O94910 1474 aa17.22■□□□□ 0.35
CRLF3-202ENST00000577725 LMTK3Q96Q04 1460 aa17.19■□□□□ 0.34
CRLF3-202ENST00000577725 DIP2BQ9P265 1576 aa17.18■□□□□ 0.34
CRLF3-202ENST00000577725 NPM1P06748 294 aaKnown RBP eCLIP17.17■□□□□ 0.34
CRLF3-202ENST00000577725 MAPKBP1O60336 1514 aa17.16■□□□□ 0.34
CRLF3-202ENST00000577725 PBRM1Q86U86 1689 aa17.14■□□□□ 0.33
CRLF3-202ENST00000577725 GRIN2AQ12879 1464 aa17.14■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms