RNA–Protein interactions for RNA: ENST00000577497.5

CUEDC1-204, Transcript of CUE domain containing 1, humanhuman

TSL 2

Gene CUEDC1, Length 707 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1-204ENST00000577497 NISCHQ9Y2I1 1504 aa33.8■■■■□ 3
CUEDC1-204ENST00000577497 CCDC180Q9P1Z9 1646 aa30.19■■■□□ 2.42
CUEDC1-204ENST00000577497 ABCC9O60706 1549 aa29.98■■■□□ 2.39
CUEDC1-204ENST00000577497 RB1CC1Q8TDY2 1594 aa28.6■■■□□ 2.17
CUEDC1-204ENST00000577497 NACADO15069 1562 aa28.46■■■□□ 2.15
CUEDC1-204ENST00000577497 DCAF8L2P0C7V8 631 aa28.38■■■□□ 2.13
CUEDC1-204ENST00000577497 MYO15BQ96JP2 1530 aa28.14■■■□□ 2.1
CUEDC1-204ENST00000577497 ZCCHC6Q5VYS8 1495 aaKnown RBP28.09■■■□□ 2.09
CUEDC1-204ENST00000577497 UNC13AQ9UPW8 1703 aa28.02■■■□□ 2.08
CUEDC1-204ENST00000577497 PABPN1Q86U42 306 aaKnown RBP eCLIP27.95■■■□□ 2.06
CUEDC1-204ENST00000577497 DNAJC5BQ9UF47 199 aa27.9■■■□□ 2.06
CUEDC1-204ENST00000577497 DCAF1Q9Y4B6 1507 aa27.9■■■□□ 2.06
CUEDC1-204ENST00000577497 BICRAQ9NZM4 1560 aa27.83■■■□□ 2.05
CUEDC1-204ENST00000577497 SCRIBQ14160 1630 aa27.59■■■□□ 2.01
CUEDC1-204ENST00000577497 SHROOM4Q9ULL8 1493 aa27.38■■□□□ 1.97
CUEDC1-204ENST00000577497 EIF4G1Q04637 1599 aaKnown RBP27.09■■□□□ 1.93
CUEDC1-204ENST00000577497 CC2D2AQ9P2K1 1620 aa27.08■■□□□ 1.93
CUEDC1-204ENST00000577497 CECR2Q9BXF3 1484 aa26.95■■□□□ 1.91
CUEDC1-204ENST00000577497 SMARCA4P51532 1647 aa26.32■■□□□ 1.8
CUEDC1-204ENST00000577497 NCAPD3P42695 1498 aa26.29■■□□□ 1.8
CUEDC1-204ENST00000577497 ATAD2BQ9ULI0 1458 aa26.27■■□□□ 1.8
CUEDC1-204ENST00000577497 BAZ1AQ9NRL2 1556 aaPredicted RBP26.2■■□□□ 1.78
CUEDC1-204ENST00000577497 SMARCA2P51531 1590 aa26.17■■□□□ 1.78
CUEDC1-204ENST00000577497 HMGXB3Q12766 1538 aa26.13■■□□□ 1.77
CUEDC1-204ENST00000577497 MROH2BQ7Z745 1585 aa26.08■■□□□ 1.77
CUEDC1-204ENST00000577497 PEG3Q9GZU2 1588 aa26.05■■□□□ 1.76
CUEDC1-204ENST00000577497 BAZ1BQ9UIG0 1483 aaKnown RBP26.02■■□□□ 1.76
CUEDC1-204ENST00000577497 NESP48681 1621 aa25.86■■□□□ 1.73
CUEDC1-204ENST00000577497 ERCC6Q03468 1493 aa25.82■■□□□ 1.72
CUEDC1-204ENST00000577497 WIZO95785 1651 aa25.79■■□□□ 1.72
CUEDC1-204ENST00000577497 CUX2O14529 1486 aa25.66■■□□□ 1.7
CUEDC1-204ENST00000577497 LAMC3Q9Y6N6 1575 aa25.65■■□□□ 1.7
CUEDC1-204ENST00000577497 RSF1Q96T23 1441 aaPredicted RBP25.63■■□□□ 1.69
CUEDC1-204ENST00000577497 THOC2Q8NI27 1593 aaKnown RBP25.53■■□□□ 1.68
CUEDC1-204ENST00000577497 KIF21AQ7Z4S6 1674 aa25.52■■□□□ 1.68
CUEDC1-204ENST00000577497 CADPSQ9ULU8 1353 aa25.49■■□□□ 1.67
CUEDC1-204ENST00000577497 PDS5BQ9NTI5 1447 aa25.46■■□□□ 1.67
CUEDC1-204ENST00000577497 TOP2AP11388 1531 aaKnown RBP25.45■■□□□ 1.66
CUEDC1-204ENST00000577497 DNAJC5Q9H3Z4 198 aa25.34■■□□□ 1.65
CUEDC1-204ENST00000577497 CFTRP13569 1480 aa25.28■■□□□ 1.64
CUEDC1-204ENST00000577497 MRC2Q9UBG0 1479 aa25.28■■□□□ 1.64
CUEDC1-204ENST00000577497 FANCD2Q9BXW9 1451 aa25.23■■□□□ 1.63
CUEDC1-204ENST00000577497 WDR62O43379 1518 aa25.22■■□□□ 1.63
CUEDC1-204ENST00000577497 CEP164Q9UPV0 1460 aa25.22■■□□□ 1.63
CUEDC1-204ENST00000577497 CCDC88BA6NC98 1476 aa25.16■■□□□ 1.62
CUEDC1-204ENST00000577497 PRDM2Q13029 1718 aa25.04■■□□□ 1.6
CUEDC1-204ENST00000577497 URB2Q14146 1524 aaKnown RBP25.04■■□□□ 1.6
CUEDC1-204ENST00000577497 TOPBP1Q92547 1522 aa24.79■■□□□ 1.56
CUEDC1-204ENST00000577497 DNMBPQ6XZF7 1577 aa24.71■■□□□ 1.55
CUEDC1-204ENST00000577497 ZNF608Q9ULD9 1512 aaPredicted RBP24.7■■□□□ 1.54
CUEDC1-204ENST00000577497 IFT140Q96RY7 1462 aa24.7■■□□□ 1.54
CUEDC1-204ENST00000577497 SUPT5HO00267 1087 aaKnown RBP24.67■■□□□ 1.54
CUEDC1-204ENST00000577497 ABCC8Q09428 1581 aa24.67■■□□□ 1.54
CUEDC1-204ENST00000577497 POLA1P09884 1462 aaPredicted RBP24.57■■□□□ 1.52
CUEDC1-204ENST00000577497 TARBP1Q13395 1621 aaKnown RBP24.57■■□□□ 1.52
CUEDC1-204ENST00000577497 EIF4G3O43432 1585 aaKnown RBP24.56■■□□□ 1.52
CUEDC1-204ENST00000577497 OSCARQ8IYS5 282 aa24.51■■□□□ 1.51
CUEDC1-204ENST00000577497 RAD54L2Q9Y4B4 1467 aa24.49■■□□□ 1.51
CUEDC1-204ENST00000577497 CUX1P39880 1505 aa24.49■■□□□ 1.51
CUEDC1-204ENST00000577497 AQRO60306 1485 aaKnown RBP eCLIP24.48■■□□□ 1.51
CUEDC1-204ENST00000577497 FGD5Q6ZNL6 1462 aa24.45■■□□□ 1.51
CUEDC1-204ENST00000577497 SOGA1O94964 1423 aa24.41■■□□□ 1.5
CUEDC1-204ENST00000577497 TRIM41Q8WV44 630 aa24.37■■□□□ 1.49
CUEDC1-204ENST00000577497 TDRD9Q8NDG6 1382 aaKnown RBP24.37■■□□□ 1.49
CUEDC1-204ENST00000577497 CHD1O14646 1710 aa24.32■■□□□ 1.48
CUEDC1-204ENST00000577497 WDR97A6NE52 1622 aa24.28■■□□□ 1.48
CUEDC1-204ENST00000577497 SNAPC4Q5SXM2 1469 aa24.25■■□□□ 1.47
CUEDC1-204ENST00000577497 RIMBP3CA6NJZ7 1639 aa24.24■■□□□ 1.47
CUEDC1-204ENST00000577497 RIMBP3BA6NNM3 1639 aa24.24■■□□□ 1.47
CUEDC1-204ENST00000577497 RIMBP3Q9UFD9 1639 aa24.24■■□□□ 1.47
CUEDC1-204ENST00000577497 FBLN2P98095 1184 aa24.22■■□□□ 1.47
CUEDC1-204ENST00000577497 ARHGEF11O15085 1522 aa24.2■■□□□ 1.46
CUEDC1-204ENST00000577497 SYNJ1O43426 1573 aa24.17■■□□□ 1.46
CUEDC1-204ENST00000577497 GRIN2BQ13224 1484 aa24.17■■□□□ 1.46
CUEDC1-204ENST00000577497 ABCA10Q8WWZ4 1543 aa24.16■■□□□ 1.46
CUEDC1-204ENST00000577497 BIVM-ERCC5R4GMW8 1640 aa24.15■■□□□ 1.46
CUEDC1-204ENST00000577497 MAGI1Q96QZ7 1491 aaPredicted RBP24.14■■□□□ 1.46
CUEDC1-204ENST00000577497 TOP2BQ02880 1626 aa24.14■■□□□ 1.46
CUEDC1-204ENST00000577497 WRNQ14191 1432 aaPredicted RBP eCLIP24.14■■□□□ 1.45
CUEDC1-204ENST00000577497 PBRM1Q86U86 1689 aa24.14■■□□□ 1.45
CUEDC1-204ENST00000577497 ABCA5Q8WWZ7 1642 aa24.13■■□□□ 1.45
CUEDC1-204ENST00000577497 GAPVD1Q14C86 1478 aa24.13■■□□□ 1.45
CUEDC1-204ENST00000577497 SYNJ2O15056 1496 aa24.07■■□□□ 1.44
CUEDC1-204ENST00000577497 CHMP7Q8WUX9 453 aaPredicted RBP24.06■■□□□ 1.44
CUEDC1-204ENST00000577497 CLASP1Q7Z460 1538 aa24.05■■□□□ 1.44
CUEDC1-204ENST00000577497 ARAP1Q96P48 1450 aa23.99■■□□□ 1.43
CUEDC1-204ENST00000577497 CYB5RLQ6IPT4 315 aa23.96■■□□□ 1.43
CUEDC1-204ENST00000577497 ADAMTS12P58397 1594 aa23.94■■□□□ 1.42
CUEDC1-204ENST00000577497 GRIN2AQ12879 1464 aa23.89■■□□□ 1.42
CUEDC1-204ENST00000577497 ERICH3Q5RHP9 1530 aa23.85■■□□□ 1.41
CUEDC1-204ENST00000577497 FHAD1B1AJZ9 1412 aa23.83■■□□□ 1.4
CUEDC1-204ENST00000577497 CEP170Q5SW79 1584 aa23.82■■□□□ 1.4
CUEDC1-204ENST00000577497 NUP160Q12769 1436 aa23.8■■□□□ 1.4
CUEDC1-204ENST00000577497 ERCC6L2Q5T890 1561 aa23.74■■□□□ 1.39
CUEDC1-204ENST00000577497 SHROOM2Q13796 1616 aa23.67■■□□□ 1.38
CUEDC1-204ENST00000577497 KIF27Q86VH2 1401 aa23.64■■□□□ 1.37
CUEDC1-204ENST00000577497 IGF1RP08069 1367 aa23.62■■□□□ 1.37
CUEDC1-204ENST00000577497 RUSC2Q8N2Y8 1516 aa23.6■■□□□ 1.37
CUEDC1-204ENST00000577497 TRHP20396 242 aaPredicted RBP23.58■■□□□ 1.37
CUEDC1-204ENST00000577497 CUL7Q14999 1698 aa23.56■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms