RNA–Protein interactions for RNA: ENST00000577228.1

CDH8-202, Transcript of cadherin 8, humanhuman

TSL 4

Gene CDH8, Length 539 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH8-202ENST00000577228 NISCHQ9Y2I1 1504 aa29.75■■■□□ 2.35
CDH8-202ENST00000577228 ABCC9O60706 1549 aa26.85■■□□□ 1.89
CDH8-202ENST00000577228 CCDC180Q9P1Z9 1646 aa26.74■■□□□ 1.87
CDH8-202ENST00000577228 RB1CC1Q8TDY2 1594 aa25.51■■□□□ 1.67
CDH8-202ENST00000577228 NACADO15069 1562 aa25.31■■□□□ 1.64
CDH8-202ENST00000577228 DNAJC5BQ9UF47 199 aa25.23■■□□□ 1.63
CDH8-202ENST00000577228 DCAF8L2P0C7V8 631 aa25.16■■□□□ 1.62
CDH8-202ENST00000577228 PABPN1Q86U42 306 aaKnown RBP eCLIP24.97■■□□□ 1.59
CDH8-202ENST00000577228 MYO15BQ96JP2 1530 aa24.92■■□□□ 1.58
CDH8-202ENST00000577228 UNC13AQ9UPW8 1703 aa24.89■■□□□ 1.57
CDH8-202ENST00000577228 BICRAQ9NZM4 1560 aa24.75■■□□□ 1.55
CDH8-202ENST00000577228 ZCCHC6Q5VYS8 1495 aaKnown RBP24.64■■□□□ 1.54
CDH8-202ENST00000577228 DCAF1Q9Y4B6 1507 aa24.56■■□□□ 1.52
CDH8-202ENST00000577228 SHROOM4Q9ULL8 1493 aa24.44■■□□□ 1.5
CDH8-202ENST00000577228 SCRIBQ14160 1630 aa24.37■■□□□ 1.49
CDH8-202ENST00000577228 CC2D2AQ9P2K1 1620 aa24.24■■□□□ 1.47
CDH8-202ENST00000577228 CECR2Q9BXF3 1484 aa24.19■■□□□ 1.46
CDH8-202ENST00000577228 EIF4G1Q04637 1599 aaKnown RBP24.16■■□□□ 1.46
CDH8-202ENST00000577228 NCAPD3P42695 1498 aa23.36■■□□□ 1.33
CDH8-202ENST00000577228 ATAD2BQ9ULI0 1458 aa23.28■■□□□ 1.32
CDH8-202ENST00000577228 DNAJC5Q9H3Z4 198 aa23.26■■□□□ 1.31
CDH8-202ENST00000577228 SMARCA4P51532 1647 aa23.23■■□□□ 1.31
CDH8-202ENST00000577228 SMARCA2P51531 1590 aa23.23■■□□□ 1.31
CDH8-202ENST00000577228 ERCC6Q03468 1493 aa23.21■■□□□ 1.31
CDH8-202ENST00000577228 HMGXB3Q12766 1538 aa23.18■■□□□ 1.3
CDH8-202ENST00000577228 CUX2O14529 1486 aa23.18■■□□□ 1.3
CDH8-202ENST00000577228 BAZ1AQ9NRL2 1556 aaPredicted RBP23.1■■□□□ 1.29
CDH8-202ENST00000577228 BAZ1BQ9UIG0 1483 aaKnown RBP23.06■■□□□ 1.28
CDH8-202ENST00000577228 NESP48681 1621 aa23.02■■□□□ 1.28
CDH8-202ENST00000577228 PEG3Q9GZU2 1588 aa23■■□□□ 1.27
CDH8-202ENST00000577228 MROH2BQ7Z745 1585 aa22.92■■□□□ 1.26
CDH8-202ENST00000577228 LAMC3Q9Y6N6 1575 aa22.85■■□□□ 1.25
CDH8-202ENST00000577228 THOC2Q8NI27 1593 aaKnown RBP22.81■■□□□ 1.24
CDH8-202ENST00000577228 PDS5BQ9NTI5 1447 aa22.74■■□□□ 1.23
CDH8-202ENST00000577228 KIF21AQ7Z4S6 1674 aa22.71■■□□□ 1.23
CDH8-202ENST00000577228 CADPSQ9ULU8 1353 aa22.64■■□□□ 1.22
CDH8-202ENST00000577228 WIZO95785 1651 aa22.63■■□□□ 1.21
CDH8-202ENST00000577228 MRC2Q9UBG0 1479 aa22.55■■□□□ 1.2
CDH8-202ENST00000577228 WDR62O43379 1518 aa22.49■■□□□ 1.19
CDH8-202ENST00000577228 CEP164Q9UPV0 1460 aa22.44■■□□□ 1.18
CDH8-202ENST00000577228 RSF1Q96T23 1441 aaPredicted RBP22.41■■□□□ 1.18
CDH8-202ENST00000577228 FANCD2Q9BXW9 1451 aa22.4■■□□□ 1.18
CDH8-202ENST00000577228 CFTRP13569 1480 aa22.37■■□□□ 1.17
CDH8-202ENST00000577228 TOP2AP11388 1531 aaKnown RBP22.36■■□□□ 1.17
CDH8-202ENST00000577228 TRIM41Q8WV44 630 aa22.22■■□□□ 1.15
CDH8-202ENST00000577228 URB2Q14146 1524 aaKnown RBP22.21■■□□□ 1.15
CDH8-202ENST00000577228 PRDM2Q13029 1718 aa22.11■■□□□ 1.13
CDH8-202ENST00000577228 OSCARQ8IYS5 282 aa22.1■■□□□ 1.13
CDH8-202ENST00000577228 CCDC88BA6NC98 1476 aa22.09■■□□□ 1.13
CDH8-202ENST00000577228 IFT140Q96RY7 1462 aa22■■□□□ 1.11
CDH8-202ENST00000577228 TOPBP1Q92547 1522 aa21.96■■□□□ 1.11
CDH8-202ENST00000577228 ZNF608Q9ULD9 1512 aaPredicted RBP21.96■■□□□ 1.11
CDH8-202ENST00000577228 ABCC8Q09428 1581 aa21.91■■□□□ 1.1
CDH8-202ENST00000577228 DNMBPQ6XZF7 1577 aa21.88■■□□□ 1.09
CDH8-202ENST00000577228 EIF4G3O43432 1585 aaKnown RBP21.83■■□□□ 1.09
CDH8-202ENST00000577228 RIMBP3CA6NJZ7 1639 aa21.82■■□□□ 1.08
CDH8-202ENST00000577228 RIMBP3BA6NNM3 1639 aa21.82■■□□□ 1.08
CDH8-202ENST00000577228 RIMBP3Q9UFD9 1639 aa21.82■■□□□ 1.08
CDH8-202ENST00000577228 TARBP1Q13395 1621 aaKnown RBP21.76■■□□□ 1.07
CDH8-202ENST00000577228 ARHGEF11O15085 1522 aa21.75■■□□□ 1.07
CDH8-202ENST00000577228 AQRO60306 1485 aaKnown RBP eCLIP21.74■■□□□ 1.07
CDH8-202ENST00000577228 POLA1P09884 1462 aaPredicted RBP21.73■■□□□ 1.07
CDH8-202ENST00000577228 CHD1O14646 1710 aa21.68■■□□□ 1.06
CDH8-202ENST00000577228 RAD54L2Q9Y4B4 1467 aa21.65■■□□□ 1.06
CDH8-202ENST00000577228 FBLN2P98095 1184 aa21.63■■□□□ 1.05
CDH8-202ENST00000577228 SOGA1O94964 1423 aa21.63■■□□□ 1.05
CDH8-202ENST00000577228 TDRD9Q8NDG6 1382 aaKnown RBP21.61■■□□□ 1.05
CDH8-202ENST00000577228 CYB5RLQ6IPT4 315 aa21.59■■□□□ 1.05
CDH8-202ENST00000577228 FGD5Q6ZNL6 1462 aa21.58■■□□□ 1.05
CDH8-202ENST00000577228 WDR97A6NE52 1622 aa21.55■■□□□ 1.04
CDH8-202ENST00000577228 CUX1P39880 1505 aa21.55■■□□□ 1.04
CDH8-202ENST00000577228 SNAPC4Q5SXM2 1469 aa21.54■■□□□ 1.04
CDH8-202ENST00000577228 ARAP1Q96P48 1450 aa21.53■■□□□ 1.04
CDH8-202ENST00000577228 MAGI1Q96QZ7 1491 aaPredicted RBP21.47■■□□□ 1.03
CDH8-202ENST00000577228 GRIN2BQ13224 1484 aa21.46■■□□□ 1.03
CDH8-202ENST00000577228 CHMP7Q8WUX9 453 aaPredicted RBP21.46■■□□□ 1.03
CDH8-202ENST00000577228 CLASP1Q7Z460 1538 aa21.44■■□□□ 1.02
CDH8-202ENST00000577228 SYNJ1O43426 1573 aa21.43■■□□□ 1.02
CDH8-202ENST00000577228 SYNJ2O15056 1496 aa21.4■■□□□ 1.02
CDH8-202ENST00000577228 TRHP20396 242 aaPredicted RBP21.39■■□□□ 1.01
CDH8-202ENST00000577228 GAPVD1Q14C86 1478 aa21.37■■□□□ 1.01
CDH8-202ENST00000577228 SUPT5HO00267 1087 aaKnown RBP21.36■■□□□ 1.01
CDH8-202ENST00000577228 PBRM1Q86U86 1689 aa21.35■■□□□ 1.01
CDH8-202ENST00000577228 ABCA10Q8WWZ4 1543 aa21.34■■□□□ 1.01
CDH8-202ENST00000577228 ABCA5Q8WWZ7 1642 aa21.3■■□□□ 1
CDH8-202ENST00000577228 WRNQ14191 1432 aaPredicted RBP eCLIP21.23■□□□□ 0.99
CDH8-202ENST00000577228 GRIN2AQ12879 1464 aa21.18■□□□□ 0.98
CDH8-202ENST00000577228 TOP2BQ02880 1626 aa21.17■□□□□ 0.98
CDH8-202ENST00000577228 BIVM-ERCC5R4GMW8 1640 aa21.17■□□□□ 0.98
CDH8-202ENST00000577228 ADAMTS12P58397 1594 aa21.16■□□□□ 0.98
CDH8-202ENST00000577228 NUP160Q12769 1436 aa21.12■□□□□ 0.97
CDH8-202ENST00000577228 FHAD1B1AJZ9 1412 aa21.11■□□□□ 0.97
CDH8-202ENST00000577228 CEP170Q5SW79 1584 aa21.1■□□□□ 0.97
CDH8-202ENST00000577228 ERCC6L2Q5T890 1561 aa21.09■□□□□ 0.97
CDH8-202ENST00000577228 ERICH3Q5RHP9 1530 aa21.07■□□□□ 0.96
CDH8-202ENST00000577228 SHROOM2Q13796 1616 aa21.02■□□□□ 0.96
CDH8-202ENST00000577228 PRG4Q92954 1404 aaPredicted RBP20.92■□□□□ 0.94
CDH8-202ENST00000577228 JPH4Q96JJ6 628 aa20.89■□□□□ 0.93
CDH8-202ENST00000577228 RUSC2Q8N2Y8 1516 aa20.86■□□□□ 0.93
CDH8-202ENST00000577228 AEBP2Q6ZN18 517 aaPredicted RBP20.85■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms