RNA–Protein interactions for RNA: ENST00000577085.1

SF3B3-215, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 4

Gene SF3B3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-215ENST00000577085 NISCHQ9Y2I1 1504 aa37.99■■■■□ 3.67
SF3B3-215ENST00000577085 CCDC180Q9P1Z9 1646 aa33.92■■■■□ 3.02
SF3B3-215ENST00000577085 ABCC9O60706 1549 aa33.58■■■□□ 2.97
SF3B3-215ENST00000577085 RB1CC1Q8TDY2 1594 aa32.15■■■□□ 2.74
SF3B3-215ENST00000577085 DCAF8L2P0C7V8 631 aa32.07■■■□□ 2.72
SF3B3-215ENST00000577085 NACADO15069 1562 aa32■■■□□ 2.71
SF3B3-215ENST00000577085 MYO15BQ96JP2 1530 aa31.65■■■□□ 2.66
SF3B3-215ENST00000577085 ZCCHC6Q5VYS8 1495 aaKnown RBP31.55■■■□□ 2.64
SF3B3-215ENST00000577085 DCAF1Q9Y4B6 1507 aa31.38■■■□□ 2.61
SF3B3-215ENST00000577085 PABPN1Q86U42 306 aaKnown RBP eCLIP31.35■■■□□ 2.61
SF3B3-215ENST00000577085 UNC13AQ9UPW8 1703 aa31.32■■■□□ 2.6
SF3B3-215ENST00000577085 BICRAQ9NZM4 1560 aa31.09■■■□□ 2.57
SF3B3-215ENST00000577085 DNAJC5BQ9UF47 199 aa31.06■■■□□ 2.56
SF3B3-215ENST00000577085 SCRIBQ14160 1630 aa30.98■■■□□ 2.55
SF3B3-215ENST00000577085 SHROOM4Q9ULL8 1493 aa30.79■■■□□ 2.52
SF3B3-215ENST00000577085 EIF4G1Q04637 1599 aaKnown RBP30.37■■■□□ 2.45
SF3B3-215ENST00000577085 CC2D2AQ9P2K1 1620 aa30.33■■■□□ 2.45
SF3B3-215ENST00000577085 CECR2Q9BXF3 1484 aa30.22■■■□□ 2.43
SF3B3-215ENST00000577085 SMARCA4P51532 1647 aa29.56■■■□□ 2.32
SF3B3-215ENST00000577085 NCAPD3P42695 1498 aa29.51■■■□□ 2.31
SF3B3-215ENST00000577085 BAZ1AQ9NRL2 1556 aaPredicted RBP29.51■■■□□ 2.31
SF3B3-215ENST00000577085 ATAD2BQ9ULI0 1458 aa29.48■■■□□ 2.31
SF3B3-215ENST00000577085 SMARCA2P51531 1590 aa29.47■■■□□ 2.31
SF3B3-215ENST00000577085 HMGXB3Q12766 1538 aa29.34■■■□□ 2.29
SF3B3-215ENST00000577085 BAZ1BQ9UIG0 1483 aaKnown RBP29.29■■■□□ 2.28
SF3B3-215ENST00000577085 MROH2BQ7Z745 1585 aa29.26■■■□□ 2.28
SF3B3-215ENST00000577085 PEG3Q9GZU2 1588 aa29.22■■■□□ 2.27
SF3B3-215ENST00000577085 ERCC6Q03468 1493 aa29.05■■■□□ 2.24
SF3B3-215ENST00000577085 WIZO95785 1651 aa28.94■■■□□ 2.22
SF3B3-215ENST00000577085 NESP48681 1621 aa28.92■■■□□ 2.22
SF3B3-215ENST00000577085 LAMC3Q9Y6N6 1575 aa28.82■■■□□ 2.2
SF3B3-215ENST00000577085 RSF1Q96T23 1441 aaPredicted RBP28.81■■■□□ 2.2
SF3B3-215ENST00000577085 CUX2O14529 1486 aa28.78■■■□□ 2.2
SF3B3-215ENST00000577085 PDS5BQ9NTI5 1447 aa28.69■■■□□ 2.18
SF3B3-215ENST00000577085 CADPSQ9ULU8 1353 aa28.67■■■□□ 2.18
SF3B3-215ENST00000577085 TOP2AP11388 1531 aaKnown RBP28.63■■■□□ 2.17
SF3B3-215ENST00000577085 KIF21AQ7Z4S6 1674 aa28.56■■■□□ 2.16
SF3B3-215ENST00000577085 THOC2Q8NI27 1593 aaKnown RBP28.53■■■□□ 2.16
SF3B3-215ENST00000577085 CFTRP13569 1480 aa28.4■■■□□ 2.14
SF3B3-215ENST00000577085 MRC2Q9UBG0 1479 aa28.38■■■□□ 2.13
SF3B3-215ENST00000577085 CEP164Q9UPV0 1460 aa28.37■■■□□ 2.13
SF3B3-215ENST00000577085 FANCD2Q9BXW9 1451 aa28.35■■■□□ 2.13
SF3B3-215ENST00000577085 DNAJC5Q9H3Z4 198 aa28.31■■■□□ 2.12
SF3B3-215ENST00000577085 CCDC88BA6NC98 1476 aa28.29■■■□□ 2.12
SF3B3-215ENST00000577085 WDR62O43379 1518 aa28.26■■■□□ 2.11
SF3B3-215ENST00000577085 PRDM2Q13029 1718 aa28.14■■■□□ 2.1
SF3B3-215ENST00000577085 URB2Q14146 1524 aaKnown RBP28.04■■■□□ 2.08
SF3B3-215ENST00000577085 SUPT5HO00267 1087 aaKnown RBP27.95■■■□□ 2.06
SF3B3-215ENST00000577085 ABCC8Q09428 1581 aa27.86■■■□□ 2.05
SF3B3-215ENST00000577085 TOPBP1Q92547 1522 aa27.83■■■□□ 2.05
SF3B3-215ENST00000577085 DNMBPQ6XZF7 1577 aa27.78■■■□□ 2.04
SF3B3-215ENST00000577085 IFT140Q96RY7 1462 aa27.77■■■□□ 2.04
SF3B3-215ENST00000577085 ZNF608Q9ULD9 1512 aaPredicted RBP27.65■■■□□ 2.02
SF3B3-215ENST00000577085 OSCARQ8IYS5 282 aa27.6■■■□□ 2.01
SF3B3-215ENST00000577085 POLA1P09884 1462 aaPredicted RBP27.57■■■□□ 2
SF3B3-215ENST00000577085 EIF4G3O43432 1585 aaKnown RBP27.53■■■□□ 2
SF3B3-215ENST00000577085 TARBP1Q13395 1621 aaKnown RBP27.52■■■□□ 2
SF3B3-215ENST00000577085 SOGA1O94964 1423 aa27.5■■□□□ 1.99
SF3B3-215ENST00000577085 CUX1P39880 1505 aa27.48■■□□□ 1.99
SF3B3-215ENST00000577085 FGD5Q6ZNL6 1462 aa27.48■■□□□ 1.99
SF3B3-215ENST00000577085 AQRO60306 1485 aaKnown RBP eCLIP27.47■■□□□ 1.991e-8■■■■■ 36.6
SF3B3-215ENST00000577085 RAD54L2Q9Y4B4 1467 aa27.47■■□□□ 1.99
SF3B3-215ENST00000577085 TDRD9Q8NDG6 1382 aaKnown RBP27.38■■□□□ 1.97
SF3B3-215ENST00000577085 FBLN2P98095 1184 aa27.34■■□□□ 1.97
SF3B3-215ENST00000577085 TRIM41Q8WV44 630 aa27.34■■□□□ 1.97
SF3B3-215ENST00000577085 WDR97A6NE52 1622 aa27.32■■□□□ 1.96
SF3B3-215ENST00000577085 CHD1O14646 1710 aa27.24■■□□□ 1.95
SF3B3-215ENST00000577085 WRNQ14191 1432 aaPredicted RBP eCLIP27.23■■□□□ 1.95
SF3B3-215ENST00000577085 SNAPC4Q5SXM2 1469 aa27.22■■□□□ 1.95
SF3B3-215ENST00000577085 GRIN2BQ13224 1484 aa27.21■■□□□ 1.95
SF3B3-215ENST00000577085 CHMP7Q8WUX9 453 aaPredicted RBP27.18■■□□□ 1.94
SF3B3-215ENST00000577085 GAPVD1Q14C86 1478 aa27.17■■□□□ 1.94
SF3B3-215ENST00000577085 MAGI1Q96QZ7 1491 aaPredicted RBP27.17■■□□□ 1.94
SF3B3-215ENST00000577085 ABCA10Q8WWZ4 1543 aa27.16■■□□□ 1.94
SF3B3-215ENST00000577085 TOP2BQ02880 1626 aa27.16■■□□□ 1.94
SF3B3-215ENST00000577085 BIVM-ERCC5R4GMW8 1640 aa27.14■■□□□ 1.94
SF3B3-215ENST00000577085 SYNJ1O43426 1573 aa27.13■■□□□ 1.93
SF3B3-215ENST00000577085 RIMBP3CA6NJZ7 1639 aa27.11■■□□□ 1.93
SF3B3-215ENST00000577085 RIMBP3BA6NNM3 1639 aa27.11■■□□□ 1.93
SF3B3-215ENST00000577085 RIMBP3Q9UFD9 1639 aa27.11■■□□□ 1.93
SF3B3-215ENST00000577085 PBRM1Q86U86 1689 aa27.1■■□□□ 1.93
SF3B3-215ENST00000577085 ARHGEF11O15085 1522 aa27.08■■□□□ 1.93
SF3B3-215ENST00000577085 SYNJ2O15056 1496 aa27.07■■□□□ 1.92
SF3B3-215ENST00000577085 ABCA5Q8WWZ7 1642 aa27.07■■□□□ 1.92
SF3B3-215ENST00000577085 CYB5RLQ6IPT4 315 aa26.93■■□□□ 1.9
SF3B3-215ENST00000577085 CLASP1Q7Z460 1538 aa26.91■■□□□ 1.9
SF3B3-215ENST00000577085 ADAMTS12P58397 1594 aa26.86■■□□□ 1.89
SF3B3-215ENST00000577085 ERICH3Q5RHP9 1530 aa26.85■■□□□ 1.89
SF3B3-215ENST00000577085 GRIN2AQ12879 1464 aa26.85■■□□□ 1.89
SF3B3-215ENST00000577085 FHAD1B1AJZ9 1412 aa26.84■■□□□ 1.89
SF3B3-215ENST00000577085 ARAP1Q96P48 1450 aa26.81■■□□□ 1.88
SF3B3-215ENST00000577085 KIF27Q86VH2 1401 aa26.72■■□□□ 1.87
SF3B3-215ENST00000577085 NUP160Q12769 1436 aa26.71■■□□□ 1.87
SF3B3-215ENST00000577085 CEP170Q5SW79 1584 aa26.7■■□□□ 1.86
SF3B3-215ENST00000577085 IGF1RP08069 1367 aa26.58■■□□□ 1.85
SF3B3-215ENST00000577085 TRHP20396 242 aaPredicted RBP26.58■■□□□ 1.85
SF3B3-215ENST00000577085 CUL7Q14999 1698 aa26.56■■□□□ 1.84
SF3B3-215ENST00000577085 SHROOM2Q13796 1616 aa26.52■■□□□ 1.84
SF3B3-215ENST00000577085 ERCC6L2Q5T890 1561 aa26.51■■□□□ 1.83
SF3B3-215ENST00000577085 JPH4Q96JJ6 628 aa26.5■■□□□ 1.83
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms