RNA–Protein interactions for RNA: ENST00000576334.1

LITAF-219, Transcript of lipopolysaccharide induced TNF factor, humanhuman

TSL 4

Gene LITAF, Length 556 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LITAF-219ENST00000576334 NISCHQ9Y2I1 1504 aa29.48■■■□□ 2.31
LITAF-219ENST00000576334 CCDC180Q9P1Z9 1646 aa26.28■■□□□ 1.8
LITAF-219ENST00000576334 ABCC9O60706 1549 aa26.18■■□□□ 1.78
LITAF-219ENST00000576334 RB1CC1Q8TDY2 1594 aa24.91■■□□□ 1.58
LITAF-219ENST00000576334 DCAF8L2P0C7V8 631 aa24.88■■□□□ 1.57
LITAF-219ENST00000576334 NACADO15069 1562 aa24.78■■□□□ 1.56
LITAF-219ENST00000576334 ZCCHC6Q5VYS8 1495 aaKnown RBP24.48■■□□□ 1.51
LITAF-219ENST00000576334 UNC13AQ9UPW8 1703 aa24.47■■□□□ 1.51
LITAF-219ENST00000576334 MYO15BQ96JP2 1530 aa24.46■■□□□ 1.51
LITAF-219ENST00000576334 PABPN1Q86U42 306 aaKnown RBP eCLIP24.45■■□□□ 1.5
LITAF-219ENST00000576334 DNAJC5BQ9UF47 199 aa24.39■■□□□ 1.49
LITAF-219ENST00000576334 DCAF1Q9Y4B6 1507 aa24.28■■□□□ 1.48
LITAF-219ENST00000576334 BICRAQ9NZM4 1560 aa24.26■■□□□ 1.47
LITAF-219ENST00000576334 SCRIBQ14160 1630 aa24.1■■□□□ 1.45
LITAF-219ENST00000576334 SHROOM4Q9ULL8 1493 aa23.75■■□□□ 1.39
LITAF-219ENST00000576334 CC2D2AQ9P2K1 1620 aa23.62■■□□□ 1.37
LITAF-219ENST00000576334 EIF4G1Q04637 1599 aaKnown RBP23.61■■□□□ 1.37
LITAF-219ENST00000576334 CECR2Q9BXF3 1484 aa23.49■■□□□ 1.35
LITAF-219ENST00000576334 SMARCA4P51532 1647 aa22.96■■□□□ 1.27
LITAF-219ENST00000576334 ATAD2BQ9ULI0 1458 aa22.91■■□□□ 1.26
LITAF-219ENST00000576334 NCAPD3P42695 1498 aa22.9■■□□□ 1.26
LITAF-219ENST00000576334 BAZ1AQ9NRL2 1556 aaPredicted RBP22.83■■□□□ 1.25
LITAF-219ENST00000576334 SMARCA2P51531 1590 aa22.79■■□□□ 1.24
LITAF-219ENST00000576334 MROH2BQ7Z745 1585 aa22.78■■□□□ 1.24
LITAF-219ENST00000576334 HMGXB3Q12766 1538 aa22.73■■□□□ 1.23
LITAF-219ENST00000576334 BAZ1BQ9UIG0 1483 aaKnown RBP22.68■■□□□ 1.22
LITAF-219ENST00000576334 PEG3Q9GZU2 1588 aa22.67■■□□□ 1.22
LITAF-219ENST00000576334 NESP48681 1621 aa22.59■■□□□ 1.21
LITAF-219ENST00000576334 WIZO95785 1651 aa22.55■■□□□ 1.2
LITAF-219ENST00000576334 ERCC6Q03468 1493 aa22.51■■□□□ 1.19
LITAF-219ENST00000576334 RSF1Q96T23 1441 aaPredicted RBP22.38■■□□□ 1.17
LITAF-219ENST00000576334 LAMC3Q9Y6N6 1575 aa22.33■■□□□ 1.17
LITAF-219ENST00000576334 CUX2O14529 1486 aa22.32■■□□□ 1.16
LITAF-219ENST00000576334 KIF21AQ7Z4S6 1674 aa22.27■■□□□ 1.16
LITAF-219ENST00000576334 THOC2Q8NI27 1593 aaKnown RBP22.24■■□□□ 1.15
LITAF-219ENST00000576334 CADPSQ9ULU8 1353 aa22.23■■□□□ 1.15
LITAF-219ENST00000576334 TOP2AP11388 1531 aaKnown RBP22.19■■□□□ 1.14
LITAF-219ENST00000576334 PDS5BQ9NTI5 1447 aa22.18■■□□□ 1.14
LITAF-219ENST00000576334 DNAJC5Q9H3Z4 198 aa22.08■■□□□ 1.13
LITAF-219ENST00000576334 CFTRP13569 1480 aa22.03■■□□□ 1.12
LITAF-219ENST00000576334 FANCD2Q9BXW9 1451 aa22.01■■□□□ 1.11
LITAF-219ENST00000576334 MRC2Q9UBG0 1479 aa22.01■■□□□ 1.11
LITAF-219ENST00000576334 CCDC88BA6NC98 1476 aa21.98■■□□□ 1.11
LITAF-219ENST00000576334 CEP164Q9UPV0 1460 aa21.97■■□□□ 1.11
LITAF-219ENST00000576334 WDR62O43379 1518 aa21.95■■□□□ 1.1
LITAF-219ENST00000576334 URB2Q14146 1524 aaKnown RBP21.85■■□□□ 1.09
LITAF-219ENST00000576334 PRDM2Q13029 1718 aa21.83■■□□□ 1.09
LITAF-219ENST00000576334 SUPT5HO00267 1087 aaKnown RBP21.66■■□□□ 1.06
LITAF-219ENST00000576334 TOPBP1Q92547 1522 aa21.62■■□□□ 1.05
LITAF-219ENST00000576334 ZNF608Q9ULD9 1512 aaPredicted RBP21.56■■□□□ 1.04
LITAF-219ENST00000576334 DNMBPQ6XZF7 1577 aa21.53■■□□□ 1.04
LITAF-219ENST00000576334 IFT140Q96RY7 1462 aa21.51■■□□□ 1.03
LITAF-219ENST00000576334 ABCC8Q09428 1581 aa21.48■■□□□ 1.03
LITAF-219ENST00000576334 POLA1P09884 1462 aaPredicted RBP21.42■■□□□ 1.02
LITAF-219ENST00000576334 TARBP1Q13395 1621 aaKnown RBP21.42■■□□□ 1.02
LITAF-219ENST00000576334 EIF4G3O43432 1585 aaKnown RBP21.4■■□□□ 1.02
LITAF-219ENST00000576334 RAD54L2Q9Y4B4 1467 aa21.4■■□□□ 1.02
LITAF-219ENST00000576334 AQRO60306 1485 aaKnown RBP eCLIP21.39■■□□□ 1.01
LITAF-219ENST00000576334 OSCARQ8IYS5 282 aa21.38■■□□□ 1.01
LITAF-219ENST00000576334 CUX1P39880 1505 aa21.38■■□□□ 1.01
LITAF-219ENST00000576334 FGD5Q6ZNL6 1462 aa21.33■■□□□ 1.01
LITAF-219ENST00000576334 SOGA1O94964 1423 aa21.32■■□□□ 1
LITAF-219ENST00000576334 TRIM41Q8WV44 630 aa21.31■■□□□ 1
LITAF-219ENST00000576334 TDRD9Q8NDG6 1382 aaKnown RBP21.3■■□□□ 1
LITAF-219ENST00000576334 CHD1O14646 1710 aa21.23■□□□□ 0.99
LITAF-219ENST00000576334 FBLN2P98095 1184 aa21.19■□□□□ 0.98
LITAF-219ENST00000576334 WDR97A6NE52 1622 aa21.16■□□□□ 0.98
LITAF-219ENST00000576334 SNAPC4Q5SXM2 1469 aa21.14■□□□□ 0.98
LITAF-219ENST00000576334 RIMBP3CA6NJZ7 1639 aa21.14■□□□□ 0.97
LITAF-219ENST00000576334 RIMBP3BA6NNM3 1639 aa21.14■□□□□ 0.97
LITAF-219ENST00000576334 RIMBP3Q9UFD9 1639 aa21.14■□□□□ 0.97
LITAF-219ENST00000576334 SYNJ1O43426 1573 aa21.1■□□□□ 0.97
LITAF-219ENST00000576334 ARHGEF11O15085 1522 aa21.08■□□□□ 0.96
LITAF-219ENST00000576334 WRNQ14191 1432 aaPredicted RBP eCLIP21.07■□□□□ 0.96
LITAF-219ENST00000576334 GRIN2BQ13224 1484 aa21.07■□□□□ 0.96
LITAF-219ENST00000576334 PBRM1Q86U86 1689 aa21.06■□□□□ 0.96
LITAF-219ENST00000576334 ABCA10Q8WWZ4 1543 aa21.06■□□□□ 0.96
LITAF-219ENST00000576334 TOP2BQ02880 1626 aa21.06■□□□□ 0.96
LITAF-219ENST00000576334 BIVM-ERCC5R4GMW8 1640 aa21.06■□□□□ 0.96
LITAF-219ENST00000576334 GAPVD1Q14C86 1478 aa21.06■□□□□ 0.96
LITAF-219ENST00000576334 ABCA5Q8WWZ7 1642 aa21.04■□□□□ 0.96
LITAF-219ENST00000576334 MAGI1Q96QZ7 1491 aaPredicted RBP21.02■□□□□ 0.96
LITAF-219ENST00000576334 CHMP7Q8WUX9 453 aaPredicted RBP21.02■□□□□ 0.96
LITAF-219ENST00000576334 SYNJ2O15056 1496 aa20.97■□□□□ 0.95
LITAF-219ENST00000576334 CLASP1Q7Z460 1538 aa20.94■□□□□ 0.94
LITAF-219ENST00000576334 CYB5RLQ6IPT4 315 aa20.94■□□□□ 0.94
LITAF-219ENST00000576334 ARAP1Q96P48 1450 aa20.91■□□□□ 0.94
LITAF-219ENST00000576334 ADAMTS12P58397 1594 aa20.86■□□□□ 0.93
LITAF-219ENST00000576334 GRIN2AQ12879 1464 aa20.83■□□□□ 0.93
LITAF-219ENST00000576334 CEP170Q5SW79 1584 aa20.79■□□□□ 0.92
LITAF-219ENST00000576334 ERICH3Q5RHP9 1530 aa20.78■□□□□ 0.92
LITAF-219ENST00000576334 FHAD1B1AJZ9 1412 aa20.78■□□□□ 0.92
LITAF-219ENST00000576334 ERCC6L2Q5T890 1561 aa20.74■□□□□ 0.91
LITAF-219ENST00000576334 NUP160Q12769 1436 aa20.73■□□□□ 0.91
LITAF-219ENST00000576334 IGF1RP08069 1367 aa20.64■□□□□ 0.89
LITAF-219ENST00000576334 KIF27Q86VH2 1401 aa20.62■□□□□ 0.89
LITAF-219ENST00000576334 TRHP20396 242 aaPredicted RBP20.62■□□□□ 0.89
LITAF-219ENST00000576334 SHROOM2Q13796 1616 aa20.62■□□□□ 0.89
LITAF-219ENST00000576334 RUSC2Q8N2Y8 1516 aa20.56■□□□□ 0.88
LITAF-219ENST00000576334 JPH4Q96JJ6 628 aa20.55■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms