RNA–Protein interactions for RNA: ENST00000576241.1

CCDC40-216, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 714 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-216ENST00000576241 NISCHQ9Y2I1 1504 aa33.96■■■■□ 3.03
CCDC40-216ENST00000576241 ABCC9O60706 1549 aa31.33■■■□□ 2.61
CCDC40-216ENST00000576241 CCDC180Q9P1Z9 1646 aa30.4■■■□□ 2.46
CCDC40-216ENST00000576241 DNAJC5BQ9UF47 199 aa30.25■■■□□ 2.43
CCDC40-216ENST00000576241 RB1CC1Q8TDY2 1594 aa29.36■■■□□ 2.29
CCDC40-216ENST00000576241 PABPN1Q86U42 306 aaKnown RBP eCLIP29.05■■■□□ 2.24
CCDC40-216ENST00000576241 NACADO15069 1562 aa28.92■■■□□ 2.22
CCDC40-216ENST00000576241 UNC13AQ9UPW8 1703 aa28.74■■■□□ 2.19
CCDC40-216ENST00000576241 DCAF8L2P0C7V8 631 aa28.67■■■□□ 2.18
CCDC40-216ENST00000576241 BICRAQ9NZM4 1560 aa28.58■■■□□ 2.17
CCDC40-216ENST00000576241 DNAJC5Q9H3Z4 198 aa28.42■■■□□ 2.14
CCDC40-216ENST00000576241 MYO15BQ96JP2 1530 aa28.38■■■□□ 2.13
CCDC40-216ENST00000576241 CECR2Q9BXF3 1484 aa28.3■■■□□ 2.12
CCDC40-216ENST00000576241 CC2D2AQ9P2K1 1620 aa28.24■■■□□ 2.11
CCDC40-216ENST00000576241 ZCCHC6Q5VYS8 1495 aaKnown RBP28.19■■■□□ 2.1
CCDC40-216ENST00000576241 DCAF1Q9Y4B6 1507 aa28.08■■■□□ 2.08
CCDC40-216ENST00000576241 SHROOM4Q9ULL8 1493 aa28.01■■■□□ 2.07
CCDC40-216ENST00000576241 EIF4G1Q04637 1599 aaKnown RBP27.94■■■□□ 2.06
CCDC40-216ENST00000576241 SCRIBQ14160 1630 aa27.73■■■□□ 2.03
CCDC40-216ENST00000576241 CUX2O14529 1486 aa27.33■■□□□ 1.97
CCDC40-216ENST00000576241 ERCC6Q03468 1493 aa27.09■■□□□ 1.93
CCDC40-216ENST00000576241 TRIM41Q8WV44 630 aa26.82■■□□□ 1.88
CCDC40-216ENST00000576241 NCAPD3P42695 1498 aa26.73■■□□□ 1.87
CCDC40-216ENST00000576241 NESP48681 1621 aa26.65■■□□□ 1.86
CCDC40-216ENST00000576241 THOC2Q8NI27 1593 aaKnown RBP26.54■■□□□ 1.84
CCDC40-216ENST00000576241 ATAD2BQ9ULI0 1458 aa26.53■■□□□ 1.84
CCDC40-216ENST00000576241 SMARCA4P51532 1647 aa26.45■■□□□ 1.82
CCDC40-216ENST00000576241 HMGXB3Q12766 1538 aa26.42■■□□□ 1.82
CCDC40-216ENST00000576241 SMARCA2P51531 1590 aa26.41■■□□□ 1.82
CCDC40-216ENST00000576241 BAZ1AQ9NRL2 1556 aaPredicted RBP26.37■■□□□ 1.81
CCDC40-216ENST00000576241 KIF21AQ7Z4S6 1674 aa26.26■■□□□ 1.79
CCDC40-216ENST00000576241 LAMC3Q9Y6N6 1575 aa26.26■■□□□ 1.79
CCDC40-216ENST00000576241 BAZ1BQ9UIG0 1483 aaKnown RBP26.23■■□□□ 1.79
CCDC40-216ENST00000576241 PEG3Q9GZU2 1588 aa26.19■■□□□ 1.78
CCDC40-216ENST00000576241 MROH2BQ7Z745 1585 aa26.16■■□□□ 1.78
CCDC40-216ENST00000576241 PDS5BQ9NTI5 1447 aa26.14■■□□□ 1.78
CCDC40-216ENST00000576241 MRC2Q9UBG0 1479 aa25.98■■□□□ 1.75
CCDC40-216ENST00000576241 OSCARQ8IYS5 282 aa25.96■■□□□ 1.75
CCDC40-216ENST00000576241 WDR62O43379 1518 aa25.95■■□□□ 1.74
CCDC40-216ENST00000576241 CADPSQ9ULU8 1353 aa25.88■■□□□ 1.73
CCDC40-216ENST00000576241 WIZO95785 1651 aa25.83■■□□□ 1.73
CCDC40-216ENST00000576241 RIMBP3CA6NJZ7 1639 aa25.74■■□□□ 1.71
CCDC40-216ENST00000576241 RIMBP3BA6NNM3 1639 aa25.74■■□□□ 1.71
CCDC40-216ENST00000576241 RIMBP3Q9UFD9 1639 aa25.74■■□□□ 1.71
CCDC40-216ENST00000576241 CEP164Q9UPV0 1460 aa25.7■■□□□ 1.7
CCDC40-216ENST00000576241 RSF1Q96T23 1441 aaPredicted RBP25.69■■□□□ 1.7
CCDC40-216ENST00000576241 FANCD2Q9BXW9 1451 aa25.6■■□□□ 1.69
CCDC40-216ENST00000576241 TOP2AP11388 1531 aaKnown RBP25.57■■□□□ 1.68
CCDC40-216ENST00000576241 ARHGEF11O15085 1522 aa25.54■■□□□ 1.68
CCDC40-216ENST00000576241 TRHP20396 242 aaPredicted RBP25.46■■□□□ 1.67
CCDC40-216ENST00000576241 CFTRP13569 1480 aa25.46■■□□□ 1.67
CCDC40-216ENST00000576241 CYB5RLQ6IPT4 315 aa25.45■■□□□ 1.66
CCDC40-216ENST00000576241 URB2Q14146 1524 aaKnown RBP25.45■■□□□ 1.66
CCDC40-216ENST00000576241 AEBP2Q6ZN18 517 aaPredicted RBP25.39■■□□□ 1.66
CCDC40-216ENST00000576241 ZNF608Q9ULD9 1512 aaPredicted RBP25.31■■□□□ 1.64
CCDC40-216ENST00000576241 CCDC88BA6NC98 1476 aa25.26■■□□□ 1.63
CCDC40-216ENST00000576241 ARAP1Q96P48 1450 aa25.23■■□□□ 1.63
CCDC40-216ENST00000576241 IFT140Q96RY7 1462 aa25.21■■□□□ 1.63
CCDC40-216ENST00000576241 PRDM2Q13029 1718 aa25.15■■□□□ 1.62
CCDC40-216ENST00000576241 CHD1O14646 1710 aa25.1■■□□□ 1.61
CCDC40-216ENST00000576241 EIF4G3O43432 1585 aaKnown RBP25.1■■□□□ 1.61
CCDC40-216ENST00000576241 TOPBP1Q92547 1522 aa25.01■■□□□ 1.59
CCDC40-216ENST00000576241 FBLN2P98095 1184 aa24.99■■□□□ 1.59
CCDC40-216ENST00000576241 AQRO60306 1485 aaKnown RBP eCLIP24.96■■□□□ 1.59
CCDC40-216ENST00000576241 ABCC8Q09428 1581 aa24.96■■□□□ 1.59
CCDC40-216ENST00000576241 DNMBPQ6XZF7 1577 aa24.88■■□□□ 1.57
CCDC40-216ENST00000576241 TARBP1Q13395 1621 aaKnown RBP24.86■■□□□ 1.57
CCDC40-216ENST00000576241 CLASP1Q7Z460 1538 aa24.77■■□□□ 1.56
CCDC40-216ENST00000576241 POLA1P09884 1462 aaPredicted RBP24.71■■□□□ 1.55
CCDC40-216ENST00000576241 SUPT5HO00267 1087 aaKnown RBP24.71■■□□□ 1.55
CCDC40-216ENST00000576241 TDRD9Q8NDG6 1382 aaKnown RBP24.67■■□□□ 1.54
CCDC40-216ENST00000576241 SNAPC4Q5SXM2 1469 aa24.66■■□□□ 1.54
CCDC40-216ENST00000576241 SYNJ1O43426 1573 aa24.66■■□□□ 1.54
CCDC40-216ENST00000576241 RAD54L2Q9Y4B4 1467 aa24.64■■□□□ 1.54
CCDC40-216ENST00000576241 SOGA1O94964 1423 aa24.63■■□□□ 1.53
CCDC40-216ENST00000576241 CHMP7Q8WUX9 453 aaPredicted RBP24.63■■□□□ 1.53
CCDC40-216ENST00000576241 GAPVD1Q14C86 1478 aa24.59■■□□□ 1.53
CCDC40-216ENST00000576241 FGD5Q6ZNL6 1462 aa24.58■■□□□ 1.53
CCDC40-216ENST00000576241 CUX1P39880 1505 aa24.58■■□□□ 1.53
CCDC40-216ENST00000576241 MAGI1Q96QZ7 1491 aaPredicted RBP24.52■■□□□ 1.52
CCDC40-216ENST00000576241 WDR97A6NE52 1622 aa24.5■■□□□ 1.51
CCDC40-216ENST00000576241 SYNJ2O15056 1496 aa24.47■■□□□ 1.51
CCDC40-216ENST00000576241 ILDR1Q86SU0 546 aaPredicted RBP24.45■■□□□ 1.5
CCDC40-216ENST00000576241 GRIN2BQ13224 1484 aa24.45■■□□□ 1.5
CCDC40-216ENST00000576241 ERCC6L2Q5T890 1561 aa24.37■■□□□ 1.49
CCDC40-216ENST00000576241 ABCA10Q8WWZ4 1543 aa24.33■■□□□ 1.49
CCDC40-216ENST00000576241 KIF13AQ9H1H9 1805 aa24.32■■□□□ 1.48
CCDC40-216ENST00000576241 PBRM1Q86U86 1689 aa24.3■■□□□ 1.48
CCDC40-216ENST00000576241 WRNQ14191 1432 aaPredicted RBP eCLIP24.29■■□□□ 1.48
CCDC40-216ENST00000576241 ABCA5Q8WWZ7 1642 aa24.24■■□□□ 1.47
CCDC40-216ENST00000576241 TOP2BQ02880 1626 aa24.23■■□□□ 1.47
CCDC40-216ENST00000576241 KDM4FA0A1W2PPD8 638 aa24.22■■□□□ 1.47
CCDC40-216ENST00000576241 BIVM-ERCC5R4GMW8 1640 aa24.21■■□□□ 1.47
CCDC40-216ENST00000576241 CEP170Q5SW79 1584 aa24.2■■□□□ 1.47
CCDC40-216ENST00000576241 GRIN2AQ12879 1464 aa24.13■■□□□ 1.45
CCDC40-216ENST00000576241 FAM69CQ0P6D2 419 aa24.1■■□□□ 1.45
CCDC40-216ENST00000576241 SHROOM2Q13796 1616 aa24.09■■□□□ 1.45
CCDC40-216ENST00000576241 NUP160Q12769 1436 aa24.09■■□□□ 1.45
CCDC40-216ENST00000576241 ADAMTS12P58397 1594 aa24.07■■□□□ 1.44
CCDC40-216ENST00000576241 FHAD1B1AJZ9 1412 aa24.04■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 65 ms