RNA–Protein interactions for RNA: ENST00000575454.1

SMG6-218, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 3

Gene SMG6, Length 652 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-218ENST00000575454 NISCHQ9Y2I1 1504 aa22.68■■□□□ 1.22
SMG6-218ENST00000575454 ABCC9O60706 1549 aa20.71■□□□□ 0.91
SMG6-218ENST00000575454 CCDC180Q9P1Z9 1646 aa20.32■□□□□ 0.84
SMG6-218ENST00000575454 DNAJC5BQ9UF47 199 aa19.86■□□□□ 0.77
SMG6-218ENST00000575454 RB1CC1Q8TDY2 1594 aa19.59■□□□□ 0.73
SMG6-218ENST00000575454 NACADO15069 1562 aa19.42■□□□□ 0.7
SMG6-218ENST00000575454 DCAF8L2P0C7V8 631 aa19.39■□□□□ 0.69
SMG6-218ENST00000575454 PABPN1Q86U42 306 aaKnown RBP eCLIP19.33■□□□□ 0.68
SMG6-218ENST00000575454 MYO15BQ96JP2 1530 aa19.12■□□□□ 0.65
SMG6-218ENST00000575454 BICRAQ9NZM4 1560 aa18.94■□□□□ 0.62
SMG6-218ENST00000575454 UNC13AQ9UPW8 1703 aa18.91■□□□□ 0.62
SMG6-218ENST00000575454 SHROOM4Q9ULL8 1493 aa18.84■□□□□ 0.61
SMG6-218ENST00000575454 DCAF1Q9Y4B6 1507 aa18.75■□□□□ 0.59
SMG6-218ENST00000575454 CECR2Q9BXF3 1484 aa18.74■□□□□ 0.59
SMG6-218ENST00000575454 ZCCHC6Q5VYS8 1495 aaKnown RBP18.72■□□□□ 0.59
SMG6-218ENST00000575454 CC2D2AQ9P2K1 1620 aa18.62■□□□□ 0.57
SMG6-218ENST00000575454 DNAJC5Q9H3Z4 198 aa18.56■□□□□ 0.56
SMG6-218ENST00000575454 EIF4G1Q04637 1599 aaKnown RBP18.55■□□□□ 0.56
SMG6-218ENST00000575454 SCRIBQ14160 1630 aa18.52■□□□□ 0.56
SMG6-218ENST00000575454 CUX2O14529 1486 aa18.02■□□□□ 0.48
SMG6-218ENST00000575454 NCAPD3P42695 1498 aa18.01■□□□□ 0.47
SMG6-218ENST00000575454 ERCC6Q03468 1493 aa17.97■□□□□ 0.47
SMG6-218ENST00000575454 ATAD2BQ9ULI0 1458 aa17.87■□□□□ 0.45
SMG6-218ENST00000575454 SMARCA2P51531 1590 aa17.79■□□□□ 0.44
SMG6-218ENST00000575454 HMGXB3Q12766 1538 aa17.75■□□□□ 0.43
SMG6-218ENST00000575454 NESP48681 1621 aa17.68■□□□□ 0.42
SMG6-218ENST00000575454 BAZ1BQ9UIG0 1483 aaKnown RBP17.67■□□□□ 0.42
SMG6-218ENST00000575454 SMARCA4P51532 1647 aa17.66■□□□□ 0.42
SMG6-218ENST00000575454 BAZ1AQ9NRL2 1556 aaPredicted RBP17.62■□□□□ 0.41
SMG6-218ENST00000575454 PDS5BQ9NTI5 1447 aa17.58■□□□□ 0.41
SMG6-218ENST00000575454 PEG3Q9GZU2 1588 aa17.54■□□□□ 0.4
SMG6-218ENST00000575454 LAMC3Q9Y6N6 1575 aa17.53■□□□□ 0.4
SMG6-218ENST00000575454 TRIM41Q8WV44 630 aa17.53■□□□□ 0.4
SMG6-218ENST00000575454 CADPSQ9ULU8 1353 aa17.47■□□□□ 0.39
SMG6-218ENST00000575454 THOC2Q8NI27 1593 aaKnown RBP17.47■□□□□ 0.39
SMG6-218ENST00000575454 MROH2BQ7Z745 1585 aa17.43■□□□□ 0.38
SMG6-218ENST00000575454 MRC2Q9UBG0 1479 aa17.37■□□□□ 0.37
SMG6-218ENST00000575454 WDR62O43379 1518 aa17.27■□□□□ 0.36
SMG6-218ENST00000575454 KIF21AQ7Z4S6 1674 aa17.27■□□□□ 0.36
SMG6-218ENST00000575454 OSCARQ8IYS5 282 aa17.26■□□□□ 0.35
SMG6-218ENST00000575454 CEP164Q9UPV0 1460 aa17.24■□□□□ 0.35
SMG6-218ENST00000575454 FANCD2Q9BXW9 1451 aa17.2■□□□□ 0.34
SMG6-218ENST00000575454 CFTRP13569 1480 aa17.17■□□□□ 0.34
SMG6-218ENST00000575454 WIZO95785 1651 aa17.1■□□□□ 0.33
SMG6-218ENST00000575454 RSF1Q96T23 1441 aaPredicted RBP17.06■□□□□ 0.32
SMG6-218ENST00000575454 URB2Q14146 1524 aaKnown RBP17.02■□□□□ 0.32
SMG6-218ENST00000575454 TOP2AP11388 1531 aaKnown RBP16.99■□□□□ 0.31
SMG6-218ENST00000575454 IFT140Q96RY7 1462 aa16.95■□□□□ 0.3
SMG6-218ENST00000575454 RIMBP3CA6NJZ7 1639 aa16.9■□□□□ 0.3
SMG6-218ENST00000575454 RIMBP3BA6NNM3 1639 aa16.9■□□□□ 0.3
SMG6-218ENST00000575454 RIMBP3Q9UFD9 1639 aa16.9■□□□□ 0.3
SMG6-218ENST00000575454 ZNF608Q9ULD9 1512 aaPredicted RBP16.86■□□□□ 0.29
SMG6-218ENST00000575454 ABCC8Q09428 1581 aa16.85■□□□□ 0.29
SMG6-218ENST00000575454 CYB5RLQ6IPT4 315 aa16.84■□□□□ 0.29
SMG6-218ENST00000575454 CCDC88BA6NC98 1476 aa16.84■□□□□ 0.29
SMG6-218ENST00000575454 ARHGEF11O15085 1522 aa16.82■□□□□ 0.28
SMG6-218ENST00000575454 TOPBP1Q92547 1522 aa16.8■□□□□ 0.28
SMG6-218ENST00000575454 FBLN2P98095 1184 aa16.76■□□□□ 0.27
SMG6-218ENST00000575454 TRHP20396 242 aaPredicted RBP16.75■□□□□ 0.27
SMG6-218ENST00000575454 AQRO60306 1485 aaKnown RBP eCLIP16.73■□□□□ 0.27
SMG6-218ENST00000575454 DNMBPQ6XZF7 1577 aa16.69■□□□□ 0.26
SMG6-218ENST00000575454 EIF4G3O43432 1585 aaKnown RBP16.67■□□□□ 0.26
SMG6-218ENST00000575454 POLA1P09884 1462 aaPredicted RBP16.63■□□□□ 0.25
SMG6-218ENST00000575454 ARAP1Q96P48 1450 aa16.63■□□□□ 0.25
SMG6-218ENST00000575454 SOGA1O94964 1423 aa16.62■□□□□ 0.25
SMG6-218ENST00000575454 CHMP7Q8WUX9 453 aaPredicted RBP16.62■□□□□ 0.25
SMG6-218ENST00000575454 TDRD9Q8NDG6 1382 aaKnown RBP16.62■□□□□ 0.25
SMG6-218ENST00000575454 PRDM2Q13029 1718 aa16.62■□□□□ 0.25
SMG6-218ENST00000575454 TARBP1Q13395 1621 aaKnown RBP16.59■□□□□ 0.25
SMG6-218ENST00000575454 RAD54L2Q9Y4B4 1467 aa16.57■□□□□ 0.24
SMG6-218ENST00000575454 SNAPC4Q5SXM2 1469 aa16.52■□□□□ 0.23
SMG6-218ENST00000575454 MAGI1Q96QZ7 1491 aaPredicted RBP16.51■□□□□ 0.23
SMG6-218ENST00000575454 AEBP2Q6ZN18 517 aaPredicted RBP16.51■□□□□ 0.23
SMG6-218ENST00000575454 CHD1O14646 1710 aa16.5■□□□□ 0.23
SMG6-218ENST00000575454 GRIN2BQ13224 1484 aa16.49■□□□□ 0.23
SMG6-218ENST00000575454 WDR97A6NE52 1622 aa16.48■□□□□ 0.23
SMG6-218ENST00000575454 FGD5Q6ZNL6 1462 aa16.48■□□□□ 0.23
SMG6-218ENST00000575454 SYNJ2O15056 1496 aa16.46■□□□□ 0.23
SMG6-218ENST00000575454 SYNJ1O43426 1573 aa16.46■□□□□ 0.23
SMG6-218ENST00000575454 CLASP1Q7Z460 1538 aa16.45■□□□□ 0.22
SMG6-218ENST00000575454 CUX1P39880 1505 aa16.39■□□□□ 0.21
SMG6-218ENST00000575454 GAPVD1Q14C86 1478 aa16.38■□□□□ 0.21
SMG6-218ENST00000575454 ABCA10Q8WWZ4 1543 aa16.31■□□□□ 0.2
SMG6-218ENST00000575454 WRNQ14191 1432 aaPredicted RBP eCLIP16.28■□□□□ 0.2
SMG6-218ENST00000575454 GRIN2AQ12879 1464 aa16.24■□□□□ 0.19
SMG6-218ENST00000575454 NUP160Q12769 1436 aa16.22■□□□□ 0.19
SMG6-218ENST00000575454 FHAD1B1AJZ9 1412 aa16.2■□□□□ 0.18
SMG6-218ENST00000575454 ABCA5Q8WWZ7 1642 aa16.19■□□□□ 0.18
SMG6-218ENST00000575454 SUPT5HO00267 1087 aaKnown RBP16.16■□□□□ 0.18
SMG6-218ENST00000575454 JPH4Q96JJ6 628 aa16.14■□□□□ 0.17
SMG6-218ENST00000575454 PBRM1Q86U86 1689 aa16.14■□□□□ 0.17
SMG6-218ENST00000575454 CEP170Q5SW79 1584 aa16.13■□□□□ 0.17
SMG6-218ENST00000575454 NPM1P06748 294 aaKnown RBP eCLIP16.13■□□□□ 0.17
SMG6-218ENST00000575454 ERCC6L2Q5T890 1561 aa16.13■□□□□ 0.17
SMG6-218ENST00000575454 PRG4Q92954 1404 aaPredicted RBP16.11■□□□□ 0.17
SMG6-218ENST00000575454 ADAMTS12P58397 1594 aa16.1■□□□□ 0.17
SMG6-218ENST00000575454 ERICH3Q5RHP9 1530 aa16.09■□□□□ 0.17
SMG6-218ENST00000575454 FAM69CQ0P6D2 419 aa16.08■□□□□ 0.16
SMG6-218ENST00000575454 SHROOM2Q13796 1616 aa16.05■□□□□ 0.16
SMG6-218ENST00000575454 TOP2BQ02880 1626 aa16.04■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms