RNA–Protein interactions for RNA: ENST00000575261.5

TVP23B-208, Transcript of trans-golgi network vesicle protein 23 homolog B, humanhuman

TSL 3

Gene TVP23B, Length 697 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TVP23B-208ENST00000575261 NISCHQ9Y2I1 1504 aa26.3■■□□□ 1.8
TVP23B-208ENST00000575261 CCDC180Q9P1Z9 1646 aa23.67■■□□□ 1.38
TVP23B-208ENST00000575261 ABCC9O60706 1549 aa23.61■■□□□ 1.37
TVP23B-208ENST00000575261 RB1CC1Q8TDY2 1594 aa22.52■■□□□ 1.2
TVP23B-208ENST00000575261 NACADO15069 1562 aa22.36■■□□□ 1.17
TVP23B-208ENST00000575261 DCAF8L2P0C7V8 631 aa22.11■■□□□ 1.13
TVP23B-208ENST00000575261 DNAJC5BQ9UF47 199 aa22.07■■□□□ 1.12
TVP23B-208ENST00000575261 MYO15BQ96JP2 1530 aa22.05■■□□□ 1.12
TVP23B-208ENST00000575261 UNC13AQ9UPW8 1703 aa22■■□□□ 1.11
TVP23B-208ENST00000575261 PABPN1Q86U42 306 aaKnown RBP eCLIP21.92■■□□□ 1.1
TVP23B-208ENST00000575261 BICRAQ9NZM4 1560 aa21.83■■□□□ 1.09
TVP23B-208ENST00000575261 ZCCHC6Q5VYS8 1495 aaKnown RBP21.82■■□□□ 1.08
TVP23B-208ENST00000575261 DCAF1Q9Y4B6 1507 aa21.75■■□□□ 1.07
TVP23B-208ENST00000575261 SHROOM4Q9ULL8 1493 aa21.61■■□□□ 1.05
TVP23B-208ENST00000575261 SCRIBQ14160 1630 aa21.53■■□□□ 1.04
TVP23B-208ENST00000575261 CC2D2AQ9P2K1 1620 aa21.36■■□□□ 1.01
TVP23B-208ENST00000575261 EIF4G1Q04637 1599 aaKnown RBP21.32■■□□□ 1
TVP23B-208ENST00000575261 CECR2Q9BXF3 1484 aa21.28■■□□□ 1
TVP23B-208ENST00000575261 NCAPD3P42695 1498 aa20.61■□□□□ 0.89
TVP23B-208ENST00000575261 SMARCA4P51532 1647 aa20.55■□□□□ 0.88
TVP23B-208ENST00000575261 ATAD2BQ9ULI0 1458 aa20.54■□□□□ 0.88
TVP23B-208ENST00000575261 SMARCA2P51531 1590 aa20.53■□□□□ 0.88
TVP23B-208ENST00000575261 HMGXB3Q12766 1538 aa20.5■□□□□ 0.87
TVP23B-208ENST00000575261 BAZ1AQ9NRL2 1556 aaPredicted RBP20.45■□□□□ 0.86
TVP23B-208ENST00000575261 ERCC6Q03468 1493 aa20.43■□□□□ 0.86
TVP23B-208ENST00000575261 CUX2O14529 1486 aa20.41■□□□□ 0.86
TVP23B-208ENST00000575261 BAZ1BQ9UIG0 1483 aaKnown RBP20.37■□□□□ 0.85
TVP23B-208ENST00000575261 PEG3Q9GZU2 1588 aa20.36■□□□□ 0.85
TVP23B-208ENST00000575261 DNAJC5Q9H3Z4 198 aa20.32■□□□□ 0.84
TVP23B-208ENST00000575261 NESP48681 1621 aa20.27■□□□□ 0.83
TVP23B-208ENST00000575261 MROH2BQ7Z745 1585 aa20.25■□□□□ 0.83
TVP23B-208ENST00000575261 LAMC3Q9Y6N6 1575 aa20.19■□□□□ 0.82
TVP23B-208ENST00000575261 THOC2Q8NI27 1593 aaKnown RBP20.13■□□□□ 0.81
TVP23B-208ENST00000575261 KIF21AQ7Z4S6 1674 aa20.06■□□□□ 0.8
TVP23B-208ENST00000575261 PDS5BQ9NTI5 1447 aa20.04■□□□□ 0.8
TVP23B-208ENST00000575261 WIZO95785 1651 aa20.01■□□□□ 0.79
TVP23B-208ENST00000575261 CADPSQ9ULU8 1353 aa19.96■□□□□ 0.79
TVP23B-208ENST00000575261 MRC2Q9UBG0 1479 aa19.88■□□□□ 0.77
TVP23B-208ENST00000575261 WDR62O43379 1518 aa19.86■□□□□ 0.77
TVP23B-208ENST00000575261 CEP164Q9UPV0 1460 aa19.81■□□□□ 0.76
TVP23B-208ENST00000575261 RSF1Q96T23 1441 aaPredicted RBP19.81■□□□□ 0.76
TVP23B-208ENST00000575261 TOP2AP11388 1531 aaKnown RBP19.79■□□□□ 0.76
TVP23B-208ENST00000575261 CFTRP13569 1480 aa19.76■□□□□ 0.75
TVP23B-208ENST00000575261 FANCD2Q9BXW9 1451 aa19.76■□□□□ 0.75
TVP23B-208ENST00000575261 PRDM2Q13029 1718 aa19.62■□□□□ 0.73
TVP23B-208ENST00000575261 URB2Q14146 1524 aaKnown RBP19.59■□□□□ 0.73
TVP23B-208ENST00000575261 CCDC88BA6NC98 1476 aa19.52■□□□□ 0.72
TVP23B-208ENST00000575261 TRIM41Q8WV44 630 aa19.43■□□□□ 0.7
TVP23B-208ENST00000575261 IFT140Q96RY7 1462 aa19.4■□□□□ 0.7
TVP23B-208ENST00000575261 OSCARQ8IYS5 282 aa19.39■□□□□ 0.69
TVP23B-208ENST00000575261 TOPBP1Q92547 1522 aa19.39■□□□□ 0.69
TVP23B-208ENST00000575261 ABCC8Q09428 1581 aa19.36■□□□□ 0.69
TVP23B-208ENST00000575261 DNMBPQ6XZF7 1577 aa19.34■□□□□ 0.69
TVP23B-208ENST00000575261 ZNF608Q9ULD9 1512 aaPredicted RBP19.34■□□□□ 0.69
TVP23B-208ENST00000575261 EIF4G3O43432 1585 aaKnown RBP19.29■□□□□ 0.68
TVP23B-208ENST00000575261 TARBP1Q13395 1621 aaKnown RBP19.23■□□□□ 0.67
TVP23B-208ENST00000575261 RIMBP3CA6NJZ7 1639 aa19.21■□□□□ 0.67
TVP23B-208ENST00000575261 RIMBP3BA6NNM3 1639 aa19.21■□□□□ 0.67
TVP23B-208ENST00000575261 RIMBP3Q9UFD9 1639 aa19.21■□□□□ 0.67
TVP23B-208ENST00000575261 POLA1P09884 1462 aaPredicted RBP19.19■□□□□ 0.66
TVP23B-208ENST00000575261 AQRO60306 1485 aaKnown RBP eCLIP19.15■□□□□ 0.66
TVP23B-208ENST00000575261 ARHGEF11O15085 1522 aa19.15■□□□□ 0.66
TVP23B-208ENST00000575261 CHD1O14646 1710 aa19.14■□□□□ 0.65
TVP23B-208ENST00000575261 RAD54L2Q9Y4B4 1467 aa19.09■□□□□ 0.65
TVP23B-208ENST00000575261 WDR97A6NE52 1622 aa19.08■□□□□ 0.65
TVP23B-208ENST00000575261 SOGA1O94964 1423 aa19.07■□□□□ 0.64
TVP23B-208ENST00000575261 FGD5Q6ZNL6 1462 aa19.06■□□□□ 0.64
TVP23B-208ENST00000575261 CUX1P39880 1505 aa19.05■□□□□ 0.64
TVP23B-208ENST00000575261 TDRD9Q8NDG6 1382 aaKnown RBP19.01■□□□□ 0.63
TVP23B-208ENST00000575261 FBLN2P98095 1184 aa19■□□□□ 0.63
TVP23B-208ENST00000575261 SNAPC4Q5SXM2 1469 aa19■□□□□ 0.63
TVP23B-208ENST00000575261 MAGI1Q96QZ7 1491 aaPredicted RBP18.97■□□□□ 0.63
TVP23B-208ENST00000575261 ARAP1Q96P48 1450 aa18.95■□□□□ 0.62
TVP23B-208ENST00000575261 GRIN2BQ13224 1484 aa18.94■□□□□ 0.62
TVP23B-208ENST00000575261 CYB5RLQ6IPT4 315 aa18.93■□□□□ 0.62
TVP23B-208ENST00000575261 CLASP1Q7Z460 1538 aa18.92■□□□□ 0.62
TVP23B-208ENST00000575261 SYNJ1O43426 1573 aa18.92■□□□□ 0.62
TVP23B-208ENST00000575261 AEBP2Q6ZN18 517 aaPredicted RBP18.91■□□□□ 0.62
TVP23B-208ENST00000575261 PBRM1Q86U86 1689 aa18.9■□□□□ 0.62
TVP23B-208ENST00000575261 SYNJ2O15056 1496 aa18.89■□□□□ 0.61
TVP23B-208ENST00000575261 GAPVD1Q14C86 1478 aa18.87■□□□□ 0.61
TVP23B-208ENST00000575261 CHMP7Q8WUX9 453 aaPredicted RBP18.87■□□□□ 0.61
TVP23B-208ENST00000575261 SUPT5HO00267 1087 aaKnown RBP18.86■□□□□ 0.61
TVP23B-208ENST00000575261 ABCA5Q8WWZ7 1642 aa18.85■□□□□ 0.61
TVP23B-208ENST00000575261 ABCA10Q8WWZ4 1543 aa18.85■□□□□ 0.61
TVP23B-208ENST00000575261 BIVM-ERCC5R4GMW8 1640 aa18.77■□□□□ 0.6
TVP23B-208ENST00000575261 WRNQ14191 1432 aaPredicted RBP eCLIP18.76■□□□□ 0.59
TVP23B-208ENST00000575261 TOP2BQ02880 1626 aa18.75■□□□□ 0.59
TVP23B-208ENST00000575261 TRHP20396 242 aaPredicted RBP18.74■□□□□ 0.59
TVP23B-208ENST00000575261 ADAMTS12P58397 1594 aa18.72■□□□□ 0.59
TVP23B-208ENST00000575261 GRIN2AQ12879 1464 aa18.71■□□□□ 0.59
TVP23B-208ENST00000575261 NUP160Q12769 1436 aa18.64■□□□□ 0.57
TVP23B-208ENST00000575261 ERICH3Q5RHP9 1530 aa18.64■□□□□ 0.57
TVP23B-208ENST00000575261 CEP170Q5SW79 1584 aa18.64■□□□□ 0.57
TVP23B-208ENST00000575261 FHAD1B1AJZ9 1412 aa18.62■□□□□ 0.57
TVP23B-208ENST00000575261 ERCC6L2Q5T890 1561 aa18.59■□□□□ 0.57
TVP23B-208ENST00000575261 SHROOM2Q13796 1616 aa18.57■□□□□ 0.56
TVP23B-208ENST00000575261 RUSC2Q8N2Y8 1516 aa18.46■□□□□ 0.55
TVP23B-208ENST00000575261 PRG4Q92954 1404 aaPredicted RBP18.43■□□□□ 0.54
TVP23B-208ENST00000575261 CUL7Q14999 1698 aa18.38■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 399.7 ms