RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 NISCHQ9Y2I1 1504 aa42.86■■■■■ 4.45
VPS53-218ENST00000575207 ABCC9O60706 1549 aa40.68■■■■■ 4.1
VPS53-218ENST00000575207 DNAJC5BQ9UF47 199 aa39.72■■■■□ 3.95
VPS53-218ENST00000575207 CCDC180Q9P1Z9 1646 aa39.11■■■■□ 3.85
VPS53-218ENST00000575207 RB1CC1Q8TDY2 1594 aa38.03■■■■□ 3.68
VPS53-218ENST00000575207 DNAJC5Q9H3Z4 198 aa37.69■■■■□ 3.62
VPS53-218ENST00000575207 PABPN1Q86U42 306 aaKnown RBP eCLIP37.64■■■■□ 3.62
VPS53-218ENST00000575207 NACADO15069 1562 aa37.41■■■■□ 3.58
VPS53-218ENST00000575207 UNC13AQ9UPW8 1703 aa37.09■■■■□ 3.53
VPS53-218ENST00000575207 BICRAQ9NZM4 1560 aa37.02■■■■□ 3.52
VPS53-218ENST00000575207 CECR2Q9BXF3 1484 aa36.86■■■■□ 3.49
VPS53-218ENST00000575207 DCAF8L2P0C7V8 631 aa36.78■■■■□ 3.48
VPS53-218ENST00000575207 CC2D2AQ9P2K1 1620 aa36.68■■■■□ 3.46
VPS53-218ENST00000575207 MYO15BQ96JP2 1530 aa36.44■■■■□ 3.42
VPS53-218ENST00000575207 SHROOM4Q9ULL8 1493 aa36.42■■■■□ 3.42
VPS53-218ENST00000575207 EIF4G1Q04637 1599 aaKnown RBP36.23■■■■□ 3.39
VPS53-218ENST00000575207 CUX2O14529 1486 aa35.8■■■■□ 3.32
VPS53-218ENST00000575207 SCRIBQ14160 1630 aa35.46■■■■□ 3.27
VPS53-218ENST00000575207 DCAF1Q9Y4B6 1507 aa35.35■■■■□ 3.25
VPS53-218ENST00000575207 ERCC6Q03468 1493 aa35.23■■■■□ 3.23
VPS53-218ENST00000575207 TRIM41Q8WV44 630 aa35.22■■■■□ 3.23
VPS53-218ENST00000575207 ZCCHC6Q5VYS8 1495 aaKnown RBP35.16■■■■□ 3.22
VPS53-218ENST00000575207 NCAPD3P42695 1498 aa34.62■■■■□ 3.13
VPS53-218ENST00000575207 NESP48681 1621 aa34.5■■■■□ 3.11
VPS53-218ENST00000575207 THOC2Q8NI27 1593 aaKnown RBP34.47■■■■□ 3.11
VPS53-218ENST00000575207 ATAD2BQ9ULI0 1458 aa34.24■■■■□ 3.07
VPS53-218ENST00000575207 HMGXB3Q12766 1538 aa34.15■■■■□ 3.06
VPS53-218ENST00000575207 SMARCA2P51531 1590 aa34.08■■■■□ 3.05
VPS53-218ENST00000575207 LAMC3Q9Y6N6 1575 aa34.02■■■■□ 3.04
VPS53-218ENST00000575207 KIF21AQ7Z4S6 1674 aa33.93■■■■□ 3.02
VPS53-218ENST00000575207 PDS5BQ9NTI5 1447 aa33.91■■■■□ 3.02
VPS53-218ENST00000575207 OSCARQ8IYS5 282 aa33.91■■■■□ 3.02
VPS53-218ENST00000575207 BAZ1AQ9NRL2 1556 aaPredicted RBP33.86■■■■□ 3.01
VPS53-218ENST00000575207 BAZ1BQ9UIG0 1483 aaKnown RBP33.76■■■■□ 3
VPS53-218ENST00000575207 SMARCA4P51532 1647 aa33.73■■■□□ 2.99
VPS53-218ENST00000575207 MRC2Q9UBG0 1479 aa33.69■■■□□ 2.98
VPS53-218ENST00000575207 WDR62O43379 1518 aa33.67■■■□□ 2.98
VPS53-218ENST00000575207 RIMBP3CA6NJZ7 1639 aa33.56■■■□□ 2.96
VPS53-218ENST00000575207 RIMBP3BA6NNM3 1639 aa33.56■■■□□ 2.96
VPS53-218ENST00000575207 RIMBP3Q9UFD9 1639 aa33.56■■■□□ 2.96
VPS53-218ENST00000575207 AEBP2Q6ZN18 517 aaPredicted RBP33.52■■■□□ 2.96
VPS53-218ENST00000575207 PEG3Q9GZU2 1588 aa33.49■■■□□ 2.95
VPS53-218ENST00000575207 CADPSQ9ULU8 1353 aa33.47■■■□□ 2.95
VPS53-218ENST00000575207 ARHGEF11O15085 1522 aa33.33■■■□□ 2.93
VPS53-218ENST00000575207 TRHP20396 242 aaPredicted RBP33.3■■■□□ 2.92
VPS53-218ENST00000575207 CEP164Q9UPV0 1460 aa33.2■■■□□ 2.91
VPS53-218ENST00000575207 CYB5RLQ6IPT4 315 aa33.19■■■□□ 2.9
VPS53-218ENST00000575207 FANCD2Q9BXW9 1451 aa33.04■■■□□ 2.88
VPS53-218ENST00000575207 MROH2BQ7Z745 1585 aa32.97■■■□□ 2.87
VPS53-218ENST00000575207 ARAP1Q96P48 1450 aa32.9■■■□□ 2.86
VPS53-218ENST00000575207 URB2Q14146 1524 aaKnown RBP32.87■■■□□ 2.85
VPS53-218ENST00000575207 CFTRP13569 1480 aa32.74■■■□□ 2.83
VPS53-218ENST00000575207 ZNF608Q9ULD9 1512 aaPredicted RBP32.73■■■□□ 2.83
VPS53-218ENST00000575207 RSF1Q96T23 1441 aaPredicted RBP32.65■■■□□ 2.82
VPS53-218ENST00000575207 IFT140Q96RY7 1462 aa32.64■■■□□ 2.82
VPS53-218ENST00000575207 WIZO95785 1651 aa32.44■■■□□ 2.78
VPS53-218ENST00000575207 CHD1O14646 1710 aa32.43■■■□□ 2.78
VPS53-218ENST00000575207 ILDR1Q86SU0 546 aaPredicted RBP32.42■■■□□ 2.78
VPS53-218ENST00000575207 EIF4G3O43432 1585 aaKnown RBP32.41■■■□□ 2.78
VPS53-218ENST00000575207 FBLN2P98095 1184 aa32.29■■■□□ 2.76
VPS53-218ENST00000575207 AQRO60306 1485 aaKnown RBP eCLIP32.23■■■□□ 2.75
VPS53-218ENST00000575207 TOPBP1Q92547 1522 aa32.23■■■□□ 2.75
VPS53-218ENST00000575207 CLASP1Q7Z460 1538 aa32.13■■■□□ 2.73
VPS53-218ENST00000575207 PRDM2Q13029 1718 aa32.12■■■□□ 2.73
VPS53-218ENST00000575207 ABCC8Q09428 1581 aa32.09■■■□□ 2.73
VPS53-218ENST00000575207 TARBP1Q13395 1621 aaKnown RBP32.06■■■□□ 2.72
VPS53-218ENST00000575207 TOP2AP11388 1531 aaKnown RBP31.96■■■□□ 2.71
VPS53-218ENST00000575207 DNMBPQ6XZF7 1577 aa31.95■■■□□ 2.71
VPS53-218ENST00000575207 GAPVD1Q14C86 1478 aa31.92■■■□□ 2.7
VPS53-218ENST00000575207 SYNJ1O43426 1573 aa31.92■■■□□ 2.7
VPS53-218ENST00000575207 CHMP7Q8WUX9 453 aaPredicted RBP31.84■■■□□ 2.69
VPS53-218ENST00000575207 SNAPC4Q5SXM2 1469 aa31.83■■■□□ 2.69
VPS53-218ENST00000575207 POLA1P09884 1462 aaPredicted RBP31.8■■■□□ 2.68
VPS53-218ENST00000575207 TDRD9Q8NDG6 1382 aaKnown RBP31.78■■■□□ 2.68
VPS53-218ENST00000575207 KDM4FA0A1W2PPD8 638 aa31.75■■■□□ 2.67
VPS53-218ENST00000575207 MAGI1Q96QZ7 1491 aaPredicted RBP31.72■■■□□ 2.67
VPS53-218ENST00000575207 RAD54L2Q9Y4B4 1467 aa31.7■■■□□ 2.66
VPS53-218ENST00000575207 CCDC88BA6NC98 1476 aa31.65■■■□□ 2.66
VPS53-218ENST00000575207 WDR97A6NE52 1622 aa31.64■■■□□ 2.66
VPS53-218ENST00000575207 SYNJ2O15056 1496 aa31.64■■■□□ 2.66
VPS53-218ENST00000575207 SOGA1O94964 1423 aa31.63■■■□□ 2.65
VPS53-218ENST00000575207 KIF13AQ9H1H9 1805 aa31.59■■■□□ 2.65
VPS53-218ENST00000575207 GRIN2BQ13224 1484 aa31.54■■■□□ 2.64
VPS53-218ENST00000575207 ERCC6L2Q5T890 1561 aa31.47■■■□□ 2.63
VPS53-218ENST00000575207 FGD5Q6ZNL6 1462 aa31.34■■■□□ 2.61
VPS53-218ENST00000575207 FAM69CQ0P6D2 419 aa31.31■■■□□ 2.6
VPS53-218ENST00000575207 ABCC10Q5T3U5 1492 aa31.29■■■□□ 2.6
VPS53-218ENST00000575207 CEP170Q5SW79 1584 aa31.28■■■□□ 2.6
VPS53-218ENST00000575207 KDM6BO15054 1643 aa31.24■■■□□ 2.59
VPS53-218ENST00000575207 PBRM1Q86U86 1689 aa31.19■■■□□ 2.58
VPS53-218ENST00000575207 NUP160Q12769 1436 aa31.14■■■□□ 2.58
VPS53-218ENST00000575207 SHROOM2Q13796 1616 aa31.13■■■□□ 2.57
VPS53-218ENST00000575207 GRIN2AQ12879 1464 aa31.13■■■□□ 2.57
VPS53-218ENST00000575207 FBXO41Q8TF61 875 aa31.12■■■□□ 2.57
VPS53-218ENST00000575207 HECW2Q9P2P5 1572 aa31.12■■■□□ 2.57
VPS53-218ENST00000575207 DIP2BQ9P265 1576 aa31.1■■■□□ 2.57
VPS53-218ENST00000575207 MAPKBP1O60336 1514 aa31.08■■■□□ 2.57
VPS53-218ENST00000575207 CUX1P39880 1505 aa31.07■■■□□ 2.56
VPS53-218ENST00000575207 ADGRL1O94910 1474 aa31.03■■■□□ 2.56
VPS53-218ENST00000575207 NPM1P06748 294 aaKnown RBP eCLIP31■■■□□ 2.55
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms