RNA–Protein interactions for RNA: ENST00000575185.1

SPNS3-203, Transcript of sphingolipid transporter 3 (putative), humanhuman

TSL 5

Gene SPNS3, Length 496 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPNS3-203ENST00000575185 NISCHQ9Y2I1 1504 aa52.84■■■■■ 6.05
SPNS3-203ENST00000575185 ABCC9O60706 1549 aa48.07■■■■■ 5.29
SPNS3-203ENST00000575185 CCDC180Q9P1Z9 1646 aa47.65■■■■■ 5.22
SPNS3-203ENST00000575185 RB1CC1Q8TDY2 1594 aa45.52■■■■■ 4.88
SPNS3-203ENST00000575185 DNAJC5BQ9UF47 199 aa45.44■■■■■ 4.86
SPNS3-203ENST00000575185 NACADO15069 1562 aa45.07■■■■■ 4.81
SPNS3-203ENST00000575185 DCAF8L2P0C7V8 631 aa44.72■■■■■ 4.75
SPNS3-203ENST00000575185 UNC13AQ9UPW8 1703 aa44.68■■■■■ 4.74
SPNS3-203ENST00000575185 PABPN1Q86U42 306 aaKnown RBP eCLIP44.64■■■■■ 4.74
SPNS3-203ENST00000575185 BICRAQ9NZM4 1560 aa44.3■■■■■ 4.68
SPNS3-203ENST00000575185 MYO15BQ96JP2 1530 aa44.26■■■■■ 4.68
SPNS3-203ENST00000575185 ZCCHC6Q5VYS8 1495 aaKnown RBP43.72■■■■■ 4.59
SPNS3-203ENST00000575185 DCAF1Q9Y4B6 1507 aa43.57■■■■■ 4.56
SPNS3-203ENST00000575185 SHROOM4Q9ULL8 1493 aa43.5■■■■■ 4.55
SPNS3-203ENST00000575185 SCRIBQ14160 1630 aa43.46■■■■■ 4.55
SPNS3-203ENST00000575185 CC2D2AQ9P2K1 1620 aa43.42■■■■■ 4.54
SPNS3-203ENST00000575185 CECR2Q9BXF3 1484 aa43.31■■■■■ 4.52
SPNS3-203ENST00000575185 EIF4G1Q04637 1599 aaKnown RBP43.2■■■■■ 4.51
SPNS3-203ENST00000575185 DNAJC5Q9H3Z4 198 aa41.94■■■■■ 4.3
SPNS3-203ENST00000575185 NCAPD3P42695 1498 aa41.59■■■■■ 4.25
SPNS3-203ENST00000575185 CUX2O14529 1486 aa41.53■■■■■ 4.24
SPNS3-203ENST00000575185 ERCC6Q03468 1493 aa41.48■■■■■ 4.23
SPNS3-203ENST00000575185 ATAD2BQ9ULI0 1458 aa41.45■■■■■ 4.23
SPNS3-203ENST00000575185 SMARCA4P51532 1647 aa41.37■■■■■ 4.21
SPNS3-203ENST00000575185 HMGXB3Q12766 1538 aa41.3■■■■■ 4.2
SPNS3-203ENST00000575185 SMARCA2P51531 1590 aa41.29■■■■■ 4.2
SPNS3-203ENST00000575185 NESP48681 1621 aa41.21■■■■■ 4.19
SPNS3-203ENST00000575185 BAZ1AQ9NRL2 1556 aaPredicted RBP41.03■■■■■ 4.16
SPNS3-203ENST00000575185 BAZ1BQ9UIG0 1483 aaKnown RBP41.03■■■■■ 4.16
SPNS3-203ENST00000575185 PEG3Q9GZU2 1588 aa40.92■■■■■ 4.14
SPNS3-203ENST00000575185 THOC2Q8NI27 1593 aaKnown RBP40.9■■■■■ 4.14
SPNS3-203ENST00000575185 LAMC3Q9Y6N6 1575 aa40.78■■■■■ 4.12
SPNS3-203ENST00000575185 MROH2BQ7Z745 1585 aa40.76■■■■■ 4.12
SPNS3-203ENST00000575185 KIF21AQ7Z4S6 1674 aa40.73■■■■■ 4.11
SPNS3-203ENST00000575185 PDS5BQ9NTI5 1447 aa40.48■■■■■ 4.07
SPNS3-203ENST00000575185 WIZO95785 1651 aa40.31■■■■■ 4.04
SPNS3-203ENST00000575185 CADPSQ9ULU8 1353 aa40.29■■■■■ 4.04
SPNS3-203ENST00000575185 MRC2Q9UBG0 1479 aa40.23■■■■■ 4.03
SPNS3-203ENST00000575185 WDR62O43379 1518 aa40.18■■■■■ 4.02
SPNS3-203ENST00000575185 TRIM41Q8WV44 630 aa40■■■■□ 3.99
SPNS3-203ENST00000575185 CEP164Q9UPV0 1460 aa39.99■■■■□ 3.99
SPNS3-203ENST00000575185 FANCD2Q9BXW9 1451 aa39.91■■■■□ 3.98
SPNS3-203ENST00000575185 CFTRP13569 1480 aa39.78■■■■□ 3.96
SPNS3-203ENST00000575185 RSF1Q96T23 1441 aaPredicted RBP39.7■■■■□ 3.95
SPNS3-203ENST00000575185 TOP2AP11388 1531 aaKnown RBP39.69■■■■□ 3.94
SPNS3-203ENST00000575185 URB2Q14146 1524 aaKnown RBP39.65■■■■□ 3.94
SPNS3-203ENST00000575185 PRDM2Q13029 1718 aa39.51■■■■□ 3.91
SPNS3-203ENST00000575185 OSCARQ8IYS5 282 aa39.48■■■■□ 3.91
SPNS3-203ENST00000575185 ZNF608Q9ULD9 1512 aaPredicted RBP39.24■■■■□ 3.87
SPNS3-203ENST00000575185 CCDC88BA6NC98 1476 aa39.23■■■■□ 3.87
SPNS3-203ENST00000575185 RIMBP3CA6NJZ7 1639 aa39.22■■■■□ 3.87
SPNS3-203ENST00000575185 RIMBP3BA6NNM3 1639 aa39.22■■■■□ 3.87
SPNS3-203ENST00000575185 RIMBP3Q9UFD9 1639 aa39.22■■■■□ 3.87
SPNS3-203ENST00000575185 IFT140Q96RY7 1462 aa39.17■■■■□ 3.86
SPNS3-203ENST00000575185 TOPBP1Q92547 1522 aa39.12■■■■□ 3.85
SPNS3-203ENST00000575185 EIF4G3O43432 1585 aaKnown RBP39.04■■■■□ 3.84
SPNS3-203ENST00000575185 ARHGEF11O15085 1522 aa38.99■■■■□ 3.83
SPNS3-203ENST00000575185 DNMBPQ6XZF7 1577 aa38.95■■■■□ 3.83
SPNS3-203ENST00000575185 ABCC8Q09428 1581 aa38.89■■■■□ 3.82
SPNS3-203ENST00000575185 CHD1O14646 1710 aa38.88■■■■□ 3.81
SPNS3-203ENST00000575185 TARBP1Q13395 1621 aaKnown RBP38.85■■■■□ 3.81
SPNS3-203ENST00000575185 AQRO60306 1485 aaKnown RBP eCLIP38.79■■■■□ 3.8
SPNS3-203ENST00000575185 POLA1P09884 1462 aaPredicted RBP38.7■■■■□ 3.79
SPNS3-203ENST00000575185 CYB5RLQ6IPT4 315 aa38.65■■■■□ 3.78
SPNS3-203ENST00000575185 ARAP1Q96P48 1450 aa38.6■■■■□ 3.77
SPNS3-203ENST00000575185 RAD54L2Q9Y4B4 1467 aa38.58■■■■□ 3.77
SPNS3-203ENST00000575185 FBLN2P98095 1184 aa38.56■■■■□ 3.76
SPNS3-203ENST00000575185 TDRD9Q8NDG6 1382 aaKnown RBP38.46■■■■□ 3.75
SPNS3-203ENST00000575185 SOGA1O94964 1423 aa38.45■■■■□ 3.75
SPNS3-203ENST00000575185 SNAPC4Q5SXM2 1469 aa38.41■■■■□ 3.74
SPNS3-203ENST00000575185 FGD5Q6ZNL6 1462 aa38.4■■■■□ 3.74
SPNS3-203ENST00000575185 TRHP20396 242 aaPredicted RBP38.35■■■■□ 3.73
SPNS3-203ENST00000575185 CLASP1Q7Z460 1538 aa38.34■■■■□ 3.73
SPNS3-203ENST00000575185 WDR97A6NE52 1622 aa38.34■■■■□ 3.73
SPNS3-203ENST00000575185 CUX1P39880 1505 aa38.33■■■■□ 3.73
SPNS3-203ENST00000575185 SYNJ1O43426 1573 aa38.23■■■■□ 3.71
SPNS3-203ENST00000575185 MAGI1Q96QZ7 1491 aaPredicted RBP38.22■■■■□ 3.71
SPNS3-203ENST00000575185 GRIN2BQ13224 1484 aa38.17■■■■□ 3.7
SPNS3-203ENST00000575185 CHMP7Q8WUX9 453 aaPredicted RBP38.16■■■■□ 3.7
SPNS3-203ENST00000575185 PBRM1Q86U86 1689 aa38.15■■■■□ 3.7
SPNS3-203ENST00000575185 SYNJ2O15056 1496 aa38.11■■■■□ 3.69
SPNS3-203ENST00000575185 GAPVD1Q14C86 1478 aa38■■■■□ 3.67
SPNS3-203ENST00000575185 ABCA5Q8WWZ7 1642 aa37.97■■■■□ 3.67
SPNS3-203ENST00000575185 ABCA10Q8WWZ4 1543 aa37.9■■■■□ 3.66
SPNS3-203ENST00000575185 ERCC6L2Q5T890 1561 aa37.78■■■■□ 3.64
SPNS3-203ENST00000575185 GRIN2AQ12879 1464 aa37.72■■■■□ 3.63
SPNS3-203ENST00000575185 ADAMTS12P58397 1594 aa37.72■■■■□ 3.63
SPNS3-203ENST00000575185 CEP170Q5SW79 1584 aa37.68■■■■□ 3.62
SPNS3-203ENST00000575185 BIVM-ERCC5R4GMW8 1640 aa37.62■■■■□ 3.61
SPNS3-203ENST00000575185 WRNQ14191 1432 aaPredicted RBP eCLIP37.61■■■■□ 3.61
SPNS3-203ENST00000575185 SUPT5HO00267 1087 aaKnown RBP37.6■■■■□ 3.61
SPNS3-203ENST00000575185 NUP160Q12769 1436 aa37.59■■■■□ 3.61
SPNS3-203ENST00000575185 TOP2BQ02880 1626 aa37.58■■■■□ 3.61
SPNS3-203ENST00000575185 SHROOM2Q13796 1616 aa37.54■■■■□ 3.6
SPNS3-203ENST00000575185 AEBP2Q6ZN18 517 aaPredicted RBP37.5■■■■□ 3.59
SPNS3-203ENST00000575185 FHAD1B1AJZ9 1412 aa37.47■■■■□ 3.59
SPNS3-203ENST00000575185 ERICH3Q5RHP9 1530 aa37.41■■■■□ 3.58
SPNS3-203ENST00000575185 KIF13AQ9H1H9 1805 aa37.35■■■■□ 3.57
SPNS3-203ENST00000575185 PRG4Q92954 1404 aaPredicted RBP37.26■■■■□ 3.55
SPNS3-203ENST00000575185 RUSC2Q8N2Y8 1516 aa37.2■■■■□ 3.55
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms