RNA–Protein interactions for RNA: ENST00000575135.5

TVP23A-209, Transcript of trans-golgi network vesicle protein 23 homolog A, humanhuman

TSL 1 (best)

Gene TVP23A, Length 1,298 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TVP23A-209ENST00000575135 NISCHQ9Y2I1 1504 aa42.1■■■■■ 4.33
TVP23A-209ENST00000575135 ABCC9O60706 1549 aa37.93■■■■□ 3.66
TVP23A-209ENST00000575135 CCDC180Q9P1Z9 1646 aa37.78■■■■□ 3.64
TVP23A-209ENST00000575135 RB1CC1Q8TDY2 1594 aa36.02■■■■□ 3.36
TVP23A-209ENST00000575135 NACADO15069 1562 aa35.76■■■■□ 3.31
TVP23A-209ENST00000575135 DNAJC5BQ9UF47 199 aa35.72■■■■□ 3.31
TVP23A-209ENST00000575135 DCAF8L2P0C7V8 631 aa35.65■■■■□ 3.3
TVP23A-209ENST00000575135 PABPN1Q86U42 306 aaKnown RBP eCLIP35.34■■■■□ 3.25
TVP23A-209ENST00000575135 UNC13AQ9UPW8 1703 aa35.23■■■■□ 3.23
TVP23A-209ENST00000575135 MYO15BQ96JP2 1530 aa35.22■■■■□ 3.23
TVP23A-209ENST00000575135 BICRAQ9NZM4 1560 aa35■■■■□ 3.19
TVP23A-209ENST00000575135 ZCCHC6Q5VYS8 1495 aaKnown RBP34.85■■■■□ 3.17
TVP23A-209ENST00000575135 DCAF1Q9Y4B6 1507 aa34.74■■■■□ 3.15
TVP23A-209ENST00000575135 SCRIBQ14160 1630 aa34.46■■■■□ 3.11
TVP23A-209ENST00000575135 SHROOM4Q9ULL8 1493 aa34.46■■■■□ 3.11
TVP23A-209ENST00000575135 CC2D2AQ9P2K1 1620 aa34.24■■■■□ 3.07
TVP23A-209ENST00000575135 CECR2Q9BXF3 1484 aa34.17■■■■□ 3.06
TVP23A-209ENST00000575135 EIF4G1Q04637 1599 aaKnown RBP34.15■■■■□ 3.06
TVP23A-209ENST00000575135 NCAPD3P42695 1498 aa33.03■■■□□ 2.88
TVP23A-209ENST00000575135 ATAD2BQ9ULI0 1458 aa32.92■■■□□ 2.86
TVP23A-209ENST00000575135 SMARCA4P51532 1647 aa32.85■■■□□ 2.85
TVP23A-209ENST00000575135 DNAJC5Q9H3Z4 198 aa32.84■■■□□ 2.85
TVP23A-209ENST00000575135 SMARCA2P51531 1590 aa32.8■■■□□ 2.84
TVP23A-209ENST00000575135 HMGXB3Q12766 1538 aa32.75■■■□□ 2.83
TVP23A-209ENST00000575135 ERCC6Q03468 1493 aa32.74■■■□□ 2.83
TVP23A-209ENST00000575135 CUX2O14529 1486 aa32.68■■■□□ 2.82
TVP23A-209ENST00000575135 BAZ1AQ9NRL2 1556 aaPredicted RBP32.66■■■□□ 2.82
TVP23A-209ENST00000575135 BAZ1BQ9UIG0 1483 aaKnown RBP32.59■■■□□ 2.81
TVP23A-209ENST00000575135 NESP48681 1621 aa32.56■■■□□ 2.8
TVP23A-209ENST00000575135 PEG3Q9GZU2 1588 aa32.52■■■□□ 2.8
TVP23A-209ENST00000575135 MROH2BQ7Z745 1585 aa32.45■■■□□ 2.79
TVP23A-209ENST00000575135 LAMC3Q9Y6N6 1575 aa32.28■■■□□ 2.76
TVP23A-209ENST00000575135 THOC2Q8NI27 1593 aaKnown RBP32.21■■■□□ 2.75
TVP23A-209ENST00000575135 KIF21AQ7Z4S6 1674 aa32.12■■■□□ 2.73
TVP23A-209ENST00000575135 PDS5BQ9NTI5 1447 aa32.12■■■□□ 2.73
TVP23A-209ENST00000575135 WIZO95785 1651 aa32.06■■■□□ 2.72
TVP23A-209ENST00000575135 CADPSQ9ULU8 1353 aa32.04■■■□□ 2.72
TVP23A-209ENST00000575135 MRC2Q9UBG0 1479 aa31.84■■■□□ 2.69
TVP23A-209ENST00000575135 RSF1Q96T23 1441 aaPredicted RBP31.75■■■□□ 2.67
TVP23A-209ENST00000575135 WDR62O43379 1518 aa31.75■■■□□ 2.67
TVP23A-209ENST00000575135 CEP164Q9UPV0 1460 aa31.69■■■□□ 2.66
TVP23A-209ENST00000575135 FANCD2Q9BXW9 1451 aa31.66■■■□□ 2.66
TVP23A-209ENST00000575135 CFTRP13569 1480 aa31.64■■■□□ 2.66
TVP23A-209ENST00000575135 TOP2AP11388 1531 aaKnown RBP31.62■■■□□ 2.65
TVP23A-209ENST00000575135 URB2Q14146 1524 aaKnown RBP31.42■■■□□ 2.62
TVP23A-209ENST00000575135 TRIM41Q8WV44 630 aa31.38■■■□□ 2.61
TVP23A-209ENST00000575135 CCDC88BA6NC98 1476 aa31.3■■■□□ 2.6
TVP23A-209ENST00000575135 PRDM2Q13029 1718 aa31.28■■■□□ 2.6
TVP23A-209ENST00000575135 OSCARQ8IYS5 282 aa31.24■■■□□ 2.59
TVP23A-209ENST00000575135 IFT140Q96RY7 1462 aa31.06■■■□□ 2.56
TVP23A-209ENST00000575135 TOPBP1Q92547 1522 aa31.05■■■□□ 2.56
TVP23A-209ENST00000575135 ZNF608Q9ULD9 1512 aaPredicted RBP31.05■■■□□ 2.56
TVP23A-209ENST00000575135 ABCC8Q09428 1581 aa30.96■■■□□ 2.55
TVP23A-209ENST00000575135 DNMBPQ6XZF7 1577 aa30.92■■■□□ 2.54
TVP23A-209ENST00000575135 EIF4G3O43432 1585 aaKnown RBP30.84■■■□□ 2.53
TVP23A-209ENST00000575135 RIMBP3CA6NJZ7 1639 aa30.81■■■□□ 2.52
TVP23A-209ENST00000575135 RIMBP3BA6NNM3 1639 aa30.81■■■□□ 2.52
TVP23A-209ENST00000575135 RIMBP3Q9UFD9 1639 aa30.81■■■□□ 2.52
TVP23A-209ENST00000575135 TARBP1Q13395 1621 aaKnown RBP30.78■■■□□ 2.52
TVP23A-209ENST00000575135 AQRO60306 1485 aaKnown RBP eCLIP30.77■■■□□ 2.52
TVP23A-209ENST00000575135 POLA1P09884 1462 aaPredicted RBP30.73■■■□□ 2.51
TVP23A-209ENST00000575135 ARHGEF11O15085 1522 aa30.7■■■□□ 2.51
TVP23A-209ENST00000575135 CHD1O14646 1710 aa30.64■■■□□ 2.5
TVP23A-209ENST00000575135 RAD54L2Q9Y4B4 1467 aa30.64■■■□□ 2.5
TVP23A-209ENST00000575135 FBLN2P98095 1184 aa30.61■■■□□ 2.49
TVP23A-209ENST00000575135 SOGA1O94964 1423 aa30.6■■■□□ 2.49
TVP23A-209ENST00000575135 TDRD9Q8NDG6 1382 aaKnown RBP30.57■■■□□ 2.48
TVP23A-209ENST00000575135 CYB5RLQ6IPT4 315 aa30.53■■■□□ 2.48
TVP23A-209ENST00000575135 FGD5Q6ZNL6 1462 aa30.52■■■□□ 2.48
TVP23A-209ENST00000575135 CUX1P39880 1505 aa30.49■■■□□ 2.47
TVP23A-209ENST00000575135 SNAPC4Q5SXM2 1469 aa30.43■■■□□ 2.46
TVP23A-209ENST00000575135 WDR97A6NE52 1622 aa30.41■■■□□ 2.46
TVP23A-209ENST00000575135 ARAP1Q96P48 1450 aa30.4■■■□□ 2.46
TVP23A-209ENST00000575135 CHMP7Q8WUX9 453 aaPredicted RBP30.36■■■□□ 2.45
TVP23A-209ENST00000575135 GRIN2BQ13224 1484 aa30.33■■■□□ 2.45
TVP23A-209ENST00000575135 MAGI1Q96QZ7 1491 aaPredicted RBP30.33■■■□□ 2.45
TVP23A-209ENST00000575135 SUPT5HO00267 1087 aaKnown RBP30.33■■■□□ 2.45
TVP23A-209ENST00000575135 CLASP1Q7Z460 1538 aa30.28■■■□□ 2.44
TVP23A-209ENST00000575135 SYNJ1O43426 1573 aa30.25■■■□□ 2.43
TVP23A-209ENST00000575135 SYNJ2O15056 1496 aa30.24■■■□□ 2.43
TVP23A-209ENST00000575135 TRHP20396 242 aaPredicted RBP30.22■■■□□ 2.43
TVP23A-209ENST00000575135 GAPVD1Q14C86 1478 aa30.22■■■□□ 2.43
TVP23A-209ENST00000575135 PBRM1Q86U86 1689 aa30.19■■■□□ 2.42
TVP23A-209ENST00000575135 ABCA10Q8WWZ4 1543 aa30.17■■■□□ 2.42
TVP23A-209ENST00000575135 ABCA5Q8WWZ7 1642 aa30.11■■■□□ 2.41
TVP23A-209ENST00000575135 WRNQ14191 1432 aaPredicted RBP eCLIP30.04■■■□□ 2.4
TVP23A-209ENST00000575135 TOP2BQ02880 1626 aa29.96■■■□□ 2.39
TVP23A-209ENST00000575135 BIVM-ERCC5R4GMW8 1640 aa29.95■■■□□ 2.38
TVP23A-209ENST00000575135 GRIN2AQ12879 1464 aa29.94■■■□□ 2.38
TVP23A-209ENST00000575135 ADAMTS12P58397 1594 aa29.9■■■□□ 2.38
TVP23A-209ENST00000575135 NUP160Q12769 1436 aa29.84■■■□□ 2.37
TVP23A-209ENST00000575135 CEP170Q5SW79 1584 aa29.84■■■□□ 2.37
TVP23A-209ENST00000575135 ERCC6L2Q5T890 1561 aa29.84■■■□□ 2.37
TVP23A-209ENST00000575135 FHAD1B1AJZ9 1412 aa29.82■■■□□ 2.36
TVP23A-209ENST00000575135 ERICH3Q5RHP9 1530 aa29.78■■■□□ 2.36
TVP23A-209ENST00000575135 SHROOM2Q13796 1616 aa29.71■■■□□ 2.35
TVP23A-209ENST00000575135 PRG4Q92954 1404 aaPredicted RBP29.59■■■□□ 2.33
TVP23A-209ENST00000575135 JPH4Q96JJ6 628 aa29.58■■■□□ 2.33
TVP23A-209ENST00000575135 RUSC2Q8N2Y8 1516 aa29.47■■■□□ 2.31
TVP23A-209ENST00000575135 IGF1RP08069 1367 aa29.41■■■□□ 2.3
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms