RNA–Protein interactions for RNA: ENST00000574867.5

NUP88-210, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 2,081 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-210ENST00000574867 NISCHQ9Y2I1 1504 aa40.69■■■■■ 4.1
NUP88-210ENST00000574867 CCDC180Q9P1Z9 1646 aa36.05■■■■□ 3.36
NUP88-210ENST00000574867 ABCC9O60706 1549 aa34.67■■■■□ 3.14
NUP88-210ENST00000574867 ZCCHC6Q5VYS8 1495 aaKnown RBP34.02■■■■□ 3.04
NUP88-210ENST00000574867 DCAF1Q9Y4B6 1507 aa33.75■■■□□ 2.99
NUP88-210ENST00000574867 NACADO15069 1562 aa33.73■■■□□ 2.99
NUP88-210ENST00000574867 MYO15BQ96JP2 1530 aa33.72■■■□□ 2.99
NUP88-210ENST00000574867 DCAF8L2P0C7V8 631 aa33.67■■■□□ 2.98
NUP88-210ENST00000574867 RB1CC1Q8TDY2 1594 aa33.65■■■□□ 2.98
NUP88-210ENST00000574867 UNC13AQ9UPW8 1703 aa32.89■■■□□ 2.86
NUP88-210ENST00000574867 SCRIBQ14160 1630 aa32.86■■■□□ 2.85
NUP88-210ENST00000574867 BICRAQ9NZM4 1560 aa32.58■■■□□ 2.81
NUP88-210ENST00000574867 PABPN1Q86U42 306 aaKnown RBP eCLIP32.42■■■□□ 2.78
NUP88-210ENST00000574867 SHROOM4Q9ULL8 1493 aa32.38■■■□□ 2.77
NUP88-210ENST00000574867 EIF4G1Q04637 1599 aaKnown RBP31.7■■■□□ 2.66
NUP88-210ENST00000574867 CECR2Q9BXF3 1484 aa31.59■■■□□ 2.65
NUP88-210ENST00000574867 BAZ1AQ9NRL2 1556 aaPredicted RBP31.54■■■□□ 2.64
NUP88-210ENST00000574867 SMARCA4P51532 1647 aa31.5■■■□□ 2.63
NUP88-210ENST00000574867 CC2D2AQ9P2K1 1620 aa31.43■■■□□ 2.62
NUP88-210ENST00000574867 MROH2BQ7Z745 1585 aa31.34■■■□□ 2.61
NUP88-210ENST00000574867 DNAJC5BQ9UF47 199 aa31.28■■■□□ 2.6
NUP88-210ENST00000574867 SMARCA2P51531 1590 aa31.2■■■□□ 2.59
NUP88-210ENST00000574867 PEG3Q9GZU2 1588 aa31.2■■■□□ 2.59
NUP88-210ENST00000574867 ATAD2BQ9ULI0 1458 aa31.16■■■□□ 2.58
NUP88-210ENST00000574867 RSF1Q96T23 1441 aaPredicted RBP31.16■■■□□ 2.58
NUP88-210ENST00000574867 NCAPD3P42695 1498 aa31.08■■■□□ 2.57
NUP88-210ENST00000574867 WIZO95785 1651 aa31.04■■■□□ 2.56
NUP88-210ENST00000574867 HMGXB3Q12766 1538 aa31.03■■■□□ 2.56
NUP88-210ENST00000574867 BAZ1BQ9UIG0 1483 aaKnown RBP30.96■■■□□ 2.55
NUP88-210ENST00000574867 TOP2AP11388 1531 aaKnown RBP30.79■■■□□ 2.52
NUP88-210ENST00000574867 SUPT5HO00267 1087 aaKnown RBP30.66■■■□□ 2.5
NUP88-210ENST00000574867 CCDC88BA6NC98 1476 aa30.36■■■□□ 2.45
NUP88-210ENST00000574867 LAMC3Q9Y6N6 1575 aa30.23■■■□□ 2.43
NUP88-210ENST00000574867 CADPSQ9ULU8 1353 aa30.18■■■□□ 2.42
NUP88-210ENST00000574867 NESP48681 1621 aa30.14■■■□□ 2.41
NUP88-210ENST00000574867 CFTRP13569 1480 aa30.13■■■□□ 2.41
NUP88-210ENST00000574867 PRDM2Q13029 1718 aa30.03■■■□□ 2.4
NUP88-210ENST00000574867 PDS5BQ9NTI5 1447 aa29.97■■■□□ 2.39
NUP88-210ENST00000574867 ERCC6Q03468 1493 aa29.89■■■□□ 2.38
NUP88-210ENST00000574867 KIF21AQ7Z4S6 1674 aa29.86■■■□□ 2.37
NUP88-210ENST00000574867 FANCD2Q9BXW9 1451 aa29.86■■■□□ 2.37
NUP88-210ENST00000574867 CEP164Q9UPV0 1460 aa29.79■■■□□ 2.36
NUP88-210ENST00000574867 THOC2Q8NI27 1593 aaKnown RBP29.66■■■□□ 2.34
NUP88-210ENST00000574867 MRC2Q9UBG0 1479 aa29.64■■■□□ 2.34
NUP88-210ENST00000574867 WDR62O43379 1518 aa29.55■■■□□ 2.32
NUP88-210ENST00000574867 URB2Q14146 1524 aaKnown RBP29.51■■■□□ 2.32
NUP88-210ENST00000574867 ABCC8Q09428 1581 aa29.5■■■□□ 2.31
NUP88-210ENST00000574867 DNMBPQ6XZF7 1577 aa29.48■■■□□ 2.31
NUP88-210ENST00000574867 TOPBP1Q92547 1522 aa29.44■■■□□ 2.3
NUP88-210ENST00000574867 CUX2O14529 1486 aa29.43■■■□□ 2.3
NUP88-210ENST00000574867 CUX1P39880 1505 aa29.39■■■□□ 2.3
NUP88-210ENST00000574867 WRNQ14191 1432 aaPredicted RBP eCLIP29.39■■■□□ 2.29
NUP88-210ENST00000574867 BIVM-ERCC5R4GMW8 1640 aa29.32■■■□□ 2.28
NUP88-210ENST00000574867 TOP2BQ02880 1626 aa29.31■■■□□ 2.28
NUP88-210ENST00000574867 SYNJ1O43426 1573 aa29.3■■■□□ 2.28
NUP88-210ENST00000574867 POLA1P09884 1462 aaPredicted RBP29.22■■■□□ 2.27
NUP88-210ENST00000574867 FGD5Q6ZNL6 1462 aa29.22■■■□□ 2.27
NUP88-210ENST00000574867 IFT140Q96RY7 1462 aa29.14■■■□□ 2.26
NUP88-210ENST00000574867 TARBP1Q13395 1621 aaKnown RBP29.1■■■□□ 2.25
NUP88-210ENST00000574867 SOGA1O94964 1423 aa29.08■■■□□ 2.25
NUP88-210ENST00000574867 RAD54L2Q9Y4B4 1467 aa29.04■■■□□ 2.24
NUP88-210ENST00000574867 WDR97A6NE52 1622 aa29.01■■■□□ 2.24
NUP88-210ENST00000574867 ABCA10Q8WWZ4 1543 aa28.98■■■□□ 2.23
NUP88-210ENST00000574867 TRIM41Q8WV44 630 aa28.97■■■□□ 2.23
NUP88-210ENST00000574867 ZNF608Q9ULD9 1512 aaPredicted RBP28.92■■■□□ 2.22
NUP88-210ENST00000574867 CHIC1Q5VXU3 224 aa28.92■■■□□ 2.22
NUP88-210ENST00000574867 EIF4G3O43432 1585 aaKnown RBP28.9■■■□□ 2.22
NUP88-210ENST00000574867 ABCA5Q8WWZ7 1642 aa28.84■■■□□ 2.21
NUP88-210ENST00000574867 TDRD9Q8NDG6 1382 aaKnown RBP28.82■■■□□ 2.2
NUP88-210ENST00000574867 AQRO60306 1485 aaKnown RBP eCLIP28.8■■■□□ 2.21e-8■■■□□ 16.2
NUP88-210ENST00000574867 GAPVD1Q14C86 1478 aa28.78■■■□□ 2.2
NUP88-210ENST00000574867 KIF27Q86VH2 1401 aa28.74■■■□□ 2.19
NUP88-210ENST00000574867 PBRM1Q86U86 1689 aa28.74■■■□□ 2.19
NUP88-210ENST00000574867 GRIN2BQ13224 1484 aa28.72■■■□□ 2.19
NUP88-210ENST00000574867 ERICH3Q5RHP9 1530 aa28.66■■■□□ 2.18
NUP88-210ENST00000574867 MAGI1Q96QZ7 1491 aaPredicted RBP28.62■■■□□ 2.17
NUP88-210ENST00000574867 SNAPC4Q5SXM2 1469 aa28.6■■■□□ 2.17
NUP88-210ENST00000574867 RUSC2Q8N2Y8 1516 aa28.56■■■□□ 2.16
NUP88-210ENST00000574867 EEA1Q15075 1411 aa28.56■■■□□ 2.16
NUP88-210ENST00000574867 ADAMTS12P58397 1594 aa28.53■■■□□ 2.16
NUP88-210ENST00000574867 CUL7Q14999 1698 aa28.53■■■□□ 2.16
NUP88-210ENST00000574867 IGF1RP08069 1367 aa28.51■■■□□ 2.15
NUP88-210ENST00000574867 SYNJ2O15056 1496 aa28.48■■■□□ 2.15
NUP88-210ENST00000574867 FHAD1B1AJZ9 1412 aa28.47■■■□□ 2.15
NUP88-210ENST00000574867 CHD1O14646 1710 aa28.44■■■□□ 2.14
NUP88-210ENST00000574867 CARMIL1Q5VZK9 1371 aa28.37■■■□□ 2.13
NUP88-210ENST00000574867 CHMP7Q8WUX9 453 aaPredicted RBP28.36■■■□□ 2.13
NUP88-210ENST00000574867 GRIN2AQ12879 1464 aa28.35■■■□□ 2.13
NUP88-210ENST00000574867 CSRNP3Q8WYN3 585 aa28.34■■■□□ 2.13
NUP88-210ENST00000574867 FBLN2P98095 1184 aa28.33■■■□□ 2.13
NUP88-210ENST00000574867 PRXQ9BXM0 1461 aa28.3■■■□□ 2.12
NUP88-210ENST00000574867 FAM9AQ8IZU1 332 aaPredicted RBP28.3■■■□□ 2.12
NUP88-210ENST00000574867 RAPGEF2Q9Y4G8 1499 aa28.29■■■□□ 2.12
NUP88-210ENST00000574867 KIF21BO75037 1637 aa28.23■■■□□ 2.11
NUP88-210ENST00000574867 OSCARQ8IYS5 282 aa28.21■■■□□ 2.11
NUP88-210ENST00000574867 NUP160Q12769 1436 aa28.2■■■□□ 2.11
NUP88-210ENST00000574867 CEP170Q5SW79 1584 aa28.18■■■□□ 2.1
NUP88-210ENST00000574867 CLASP1Q7Z460 1538 aa28.13■■■□□ 2.09
NUP88-210ENST00000574867 GOLGA3Q08378 1498 aa28.08■■■□□ 2.09
NUP88-210ENST00000574867 CTTNBP2Q8WZ74 1663 aa28.06■■■□□ 2.08
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms