RNA–Protein interactions for RNA: ENST00000574662.1

SMPD3-212, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 3

Gene SMPD3, Length 1,755 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-212ENST00000574662 NISCHQ9Y2I1 1504 aa36.99■■■■□ 3.51
SMPD3-212ENST00000574662 CCDC180Q9P1Z9 1646 aa32.44■■■□□ 2.78
SMPD3-212ENST00000574662 ABCC9O60706 1549 aa31.26■■■□□ 2.59
SMPD3-212ENST00000574662 ZCCHC6Q5VYS8 1495 aaKnown RBP30.94■■■□□ 2.54
SMPD3-212ENST00000574662 DCAF8L2P0C7V8 631 aa30.79■■■□□ 2.52
SMPD3-212ENST00000574662 DCAF1Q9Y4B6 1507 aa30.56■■■□□ 2.48
SMPD3-212ENST00000574662 MYO15BQ96JP2 1530 aa30.41■■■□□ 2.46
SMPD3-212ENST00000574662 NACADO15069 1562 aa30.39■■■□□ 2.46
SMPD3-212ENST00000574662 RB1CC1Q8TDY2 1594 aa30.25■■■□□ 2.43
SMPD3-212ENST00000574662 SHROOM4Q9ULL8 1493 aa29.81■■■□□ 2.36
SMPD3-212ENST00000574662 SCRIBQ14160 1630 aa29.79■■■□□ 2.36
SMPD3-212ENST00000574662 UNC13AQ9UPW8 1703 aa29.6■■■□□ 2.33
SMPD3-212ENST00000574662 PABPN1Q86U42 306 aaKnown RBP eCLIP29.42■■■□□ 2.3
SMPD3-212ENST00000574662 BICRAQ9NZM4 1560 aa29.4■■■□□ 2.3
SMPD3-212ENST00000574662 CECR2Q9BXF3 1484 aa28.83■■■□□ 2.21
SMPD3-212ENST00000574662 MROH2BQ7Z745 1585 aa28.58■■■□□ 2.17
SMPD3-212ENST00000574662 BAZ1AQ9NRL2 1556 aaPredicted RBP28.57■■■□□ 2.16
SMPD3-212ENST00000574662 DNAJC5BQ9UF47 199 aa28.57■■■□□ 2.16
SMPD3-212ENST00000574662 EIF4G1Q04637 1599 aaKnown RBP28.53■■■□□ 2.16
SMPD3-212ENST00000574662 SMARCA4P51532 1647 aa28.52■■■□□ 2.16
SMPD3-212ENST00000574662 RSF1Q96T23 1441 aaPredicted RBP28.51■■■□□ 2.15
SMPD3-212ENST00000574662 SUPT5HO00267 1087 aaKnown RBP28.42■■■□□ 2.14
SMPD3-212ENST00000574662 WIZO95785 1651 aa28.28■■■□□ 2.12
SMPD3-212ENST00000574662 CC2D2AQ9P2K1 1620 aa28.25■■■□□ 2.11
SMPD3-212ENST00000574662 ATAD2BQ9ULI0 1458 aa28.24■■■□□ 2.11
SMPD3-212ENST00000574662 PEG3Q9GZU2 1588 aa28.2■■■□□ 2.11
SMPD3-212ENST00000574662 SMARCA2P51531 1590 aa28.16■■■□□ 2.1
SMPD3-212ENST00000574662 NCAPD3P42695 1498 aa28.1■■■□□ 2.09
SMPD3-212ENST00000574662 BAZ1BQ9UIG0 1483 aaKnown RBP28.01■■■□□ 2.07
SMPD3-212ENST00000574662 TOP2AP11388 1531 aaKnown RBP27.96■■■□□ 2.07
SMPD3-212ENST00000574662 HMGXB3Q12766 1538 aa27.95■■■□□ 2.06
SMPD3-212ENST00000574662 CCDC88BA6NC98 1476 aa27.72■■■□□ 2.03
SMPD3-212ENST00000574662 CADPSQ9ULU8 1353 aa27.34■■□□□ 1.97
SMPD3-212ENST00000574662 CFTRP13569 1480 aa27.31■■□□□ 1.96
SMPD3-212ENST00000574662 NESP48681 1621 aa27.29■■□□□ 1.96
SMPD3-212ENST00000574662 LAMC3Q9Y6N6 1575 aa27.17■■□□□ 1.94
SMPD3-212ENST00000574662 PRDM2Q13029 1718 aa27.02■■□□□ 1.92
SMPD3-212ENST00000574662 FANCD2Q9BXW9 1451 aa27.01■■□□□ 1.91
SMPD3-212ENST00000574662 PDS5BQ9NTI5 1447 aa27.01■■□□□ 1.91
SMPD3-212ENST00000574662 CHIC1Q5VXU3 224 aa26.94■■□□□ 1.9
SMPD3-212ENST00000574662 ABCC8Q09428 1581 aa26.92■■□□□ 1.9
SMPD3-212ENST00000574662 KIF21AQ7Z4S6 1674 aa26.88■■□□□ 1.89
SMPD3-212ENST00000574662 CEP164Q9UPV0 1460 aa26.87■■□□□ 1.89
SMPD3-212ENST00000574662 WRNQ14191 1432 aaPredicted RBP eCLIP26.82■■□□□ 1.88
SMPD3-212ENST00000574662 ERCC6Q03468 1493 aa26.82■■□□□ 1.88
SMPD3-212ENST00000574662 CUX1P39880 1505 aa26.74■■□□□ 1.87
SMPD3-212ENST00000574662 TRIM41Q8WV44 630 aa26.74■■□□□ 1.87
SMPD3-212ENST00000574662 SYNJ1O43426 1573 aa26.73■■□□□ 1.87
SMPD3-212ENST00000574662 URB2Q14146 1524 aaKnown RBP26.72■■□□□ 1.87
SMPD3-212ENST00000574662 MRC2Q9UBG0 1479 aa26.69■■□□□ 1.86
SMPD3-212ENST00000574662 TOPBP1Q92547 1522 aa26.66■■□□□ 1.86
SMPD3-212ENST00000574662 TOP2BQ02880 1626 aa26.65■■□□□ 1.86
SMPD3-212ENST00000574662 DNMBPQ6XZF7 1577 aa26.64■■□□□ 1.85
SMPD3-212ENST00000574662 BIVM-ERCC5R4GMW8 1640 aa26.61■■□□□ 1.85
SMPD3-212ENST00000574662 THOC2Q8NI27 1593 aaKnown RBP26.6■■□□□ 1.85
SMPD3-212ENST00000574662 WDR62O43379 1518 aa26.56■■□□□ 1.84
SMPD3-212ENST00000574662 FGD5Q6ZNL6 1462 aa26.53■■□□□ 1.84
SMPD3-212ENST00000574662 POLA1P09884 1462 aaPredicted RBP26.49■■□□□ 1.83
SMPD3-212ENST00000574662 CUX2O14529 1486 aa26.46■■□□□ 1.83
SMPD3-212ENST00000574662 RAD54L2Q9Y4B4 1467 aa26.43■■□□□ 1.82
SMPD3-212ENST00000574662 SOGA1O94964 1423 aa26.41■■□□□ 1.82
SMPD3-212ENST00000574662 RUSC2Q8N2Y8 1516 aa26.3■■□□□ 1.8
SMPD3-212ENST00000574662 TARBP1Q13395 1621 aaKnown RBP26.3■■□□□ 1.8
SMPD3-212ENST00000574662 IFT140Q96RY7 1462 aa26.28■■□□□ 1.8
SMPD3-212ENST00000574662 ABCA10Q8WWZ4 1543 aa26.27■■□□□ 1.8
SMPD3-212ENST00000574662 FAM9AQ8IZU1 332 aaPredicted RBP26.27■■□□□ 1.8
SMPD3-212ENST00000574662 TDRD9Q8NDG6 1382 aaKnown RBP26.24■■□□□ 1.79
SMPD3-212ENST00000574662 WDR97A6NE52 1622 aa26.2■■□□□ 1.78
SMPD3-212ENST00000574662 ZNF608Q9ULD9 1512 aaPredicted RBP26.2■■□□□ 1.78
SMPD3-212ENST00000574662 KIF27Q86VH2 1401 aa26.18■■□□□ 1.78
SMPD3-212ENST00000574662 AQRO60306 1485 aaKnown RBP eCLIP26.15■■□□□ 1.78
SMPD3-212ENST00000574662 CSRNP3Q8WYN3 585 aa26.1■■□□□ 1.77
SMPD3-212ENST00000574662 EEA1Q15075 1411 aa26.1■■□□□ 1.77
SMPD3-212ENST00000574662 GAPVD1Q14C86 1478 aa26.1■■□□□ 1.77
SMPD3-212ENST00000574662 ABCA5Q8WWZ7 1642 aa26.08■■□□□ 1.77
SMPD3-212ENST00000574662 IGF1RP08069 1367 aa26.08■■□□□ 1.76
SMPD3-212ENST00000574662 EIF4G3O43432 1585 aaKnown RBP26.02■■□□□ 1.76
SMPD3-212ENST00000574662 GRIN2BQ13224 1484 aa25.97■■□□□ 1.75
SMPD3-212ENST00000574662 ERICH3Q5RHP9 1530 aa25.94■■□□□ 1.74
SMPD3-212ENST00000574662 EHMT2Q96KQ7 1210 aa25.92■■□□□ 1.74
SMPD3-212ENST00000574662 PBRM1Q86U86 1689 aa25.92■■□□□ 1.74
SMPD3-212ENST00000574662 LOC105371045A0A1W2PR82 267 aa25.91■■□□□ 1.74
SMPD3-212ENST00000574662 CARMIL1Q5VZK9 1371 aa25.9■■□□□ 1.74
SMPD3-212ENST00000574662 DNAJC5Q9H3Z4 198 aa25.9■■□□□ 1.74
SMPD3-212ENST00000574662 PRXQ9BXM0 1461 aa25.89■■□□□ 1.74
SMPD3-212ENST00000574662 SNAPC4Q5SXM2 1469 aa25.86■■□□□ 1.73
SMPD3-212ENST00000574662 RAPGEF2Q9Y4G8 1499 aa25.81■■□□□ 1.72
SMPD3-212ENST00000574662 CUL7Q14999 1698 aa25.8■■□□□ 1.72
SMPD3-212ENST00000574662 FHAD1B1AJZ9 1412 aa25.8■■□□□ 1.72
SMPD3-212ENST00000574662 MAGI1Q96QZ7 1491 aaPredicted RBP25.79■■□□□ 1.72
SMPD3-212ENST00000574662 KIF21BO75037 1637 aa25.78■■□□□ 1.72
SMPD3-212ENST00000574662 ADAMTS12P58397 1594 aa25.78■■□□□ 1.72
SMPD3-212ENST00000574662 GOLGA3Q08378 1498 aa25.72■■□□□ 1.71
SMPD3-212ENST00000574662 FBLN2P98095 1184 aa25.72■■□□□ 1.71
SMPD3-212ENST00000574662 CHMP7Q8WUX9 453 aaPredicted RBP25.72■■□□□ 1.71
SMPD3-212ENST00000574662 SYNJ2O15056 1496 aa25.71■■□□□ 1.71
SMPD3-212ENST00000574662 UBTFP17480 764 aaKnown RBP25.7■■□□□ 1.7
SMPD3-212ENST00000574662 GRIN2AQ12879 1464 aa25.64■■□□□ 1.7
SMPD3-212ENST00000574662 TNIKQ9UKE5 1360 aa25.58■■□□□ 1.69
SMPD3-212ENST00000574662 CHD1O14646 1710 aa25.56■■□□□ 1.68
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms