RNA–Protein interactions for RNA: ENST00000574545.1

SCARF1-208, Transcript of scavenger receptor class F member 1, humanhuman

TSL 1 (best)

Gene SCARF1, Length 894 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARF1-208ENST00000574545 NISCHQ9Y2I1 1504 aa48.69■■■■■ 5.39
SCARF1-208ENST00000574545 CCDC180Q9P1Z9 1646 aa43.39■■■■■ 4.54
SCARF1-208ENST00000574545 ABCC9O60706 1549 aa42.9■■■■■ 4.46
SCARF1-208ENST00000574545 RB1CC1Q8TDY2 1594 aa41.05■■■■■ 4.16
SCARF1-208ENST00000574545 NACADO15069 1562 aa40.94■■■■■ 4.14
SCARF1-208ENST00000574545 DCAF8L2P0C7V8 631 aa40.79■■■■■ 4.12
SCARF1-208ENST00000574545 MYO15BQ96JP2 1530 aa40.62■■■■■ 4.09
SCARF1-208ENST00000574545 ZCCHC6Q5VYS8 1495 aaKnown RBP40.47■■■■■ 4.07
SCARF1-208ENST00000574545 DCAF1Q9Y4B6 1507 aa40.28■■■■■ 4.04
SCARF1-208ENST00000574545 UNC13AQ9UPW8 1703 aa40.13■■■■■ 4.01
SCARF1-208ENST00000574545 PABPN1Q86U42 306 aaKnown RBP eCLIP40.06■■■■■ 4
SCARF1-208ENST00000574545 BICRAQ9NZM4 1560 aa39.92■■■■□ 3.98
SCARF1-208ENST00000574545 DNAJC5BQ9UF47 199 aa39.9■■■■□ 3.98
SCARF1-208ENST00000574545 SCRIBQ14160 1630 aa39.54■■■■□ 3.92
SCARF1-208ENST00000574545 SHROOM4Q9ULL8 1493 aa39.4■■■■□ 3.9
SCARF1-208ENST00000574545 EIF4G1Q04637 1599 aaKnown RBP38.85■■■■□ 3.81
SCARF1-208ENST00000574545 CC2D2AQ9P2K1 1620 aa38.78■■■■□ 3.8
SCARF1-208ENST00000574545 CECR2Q9BXF3 1484 aa38.6■■■■□ 3.77
SCARF1-208ENST00000574545 NCAPD3P42695 1498 aa37.85■■■■□ 3.65
SCARF1-208ENST00000574545 SMARCA4P51532 1647 aa37.83■■■■□ 3.65
SCARF1-208ENST00000574545 ATAD2BQ9ULI0 1458 aa37.78■■■■□ 3.64
SCARF1-208ENST00000574545 BAZ1AQ9NRL2 1556 aaPredicted RBP37.72■■■■□ 3.63
SCARF1-208ENST00000574545 SMARCA2P51531 1590 aa37.65■■■■□ 3.62
SCARF1-208ENST00000574545 HMGXB3Q12766 1538 aa37.56■■■■□ 3.6
SCARF1-208ENST00000574545 MROH2BQ7Z745 1585 aa37.52■■■■□ 3.6
SCARF1-208ENST00000574545 PEG3Q9GZU2 1588 aa37.52■■■■□ 3.6
SCARF1-208ENST00000574545 BAZ1BQ9UIG0 1483 aaKnown RBP37.38■■■■□ 3.57
SCARF1-208ENST00000574545 WIZO95785 1651 aa37.05■■■■□ 3.52
SCARF1-208ENST00000574545 NESP48681 1621 aa37.03■■■■□ 3.52
SCARF1-208ENST00000574545 RSF1Q96T23 1441 aaPredicted RBP36.96■■■■□ 3.51
SCARF1-208ENST00000574545 ERCC6Q03468 1493 aa36.94■■■■□ 3.5
SCARF1-208ENST00000574545 LAMC3Q9Y6N6 1575 aa36.83■■■■□ 3.49
SCARF1-208ENST00000574545 CUX2O14529 1486 aa36.77■■■■□ 3.48
SCARF1-208ENST00000574545 CADPSQ9ULU8 1353 aa36.7■■■■□ 3.47
SCARF1-208ENST00000574545 TOP2AP11388 1531 aaKnown RBP36.64■■■■□ 3.46
SCARF1-208ENST00000574545 PDS5BQ9NTI5 1447 aa36.61■■■■□ 3.45
SCARF1-208ENST00000574545 THOC2Q8NI27 1593 aaKnown RBP36.53■■■■□ 3.44
SCARF1-208ENST00000574545 KIF21AQ7Z4S6 1674 aa36.51■■■■□ 3.44
SCARF1-208ENST00000574545 CFTRP13569 1480 aa36.4■■■■□ 3.42
SCARF1-208ENST00000574545 CCDC88BA6NC98 1476 aa36.25■■■■□ 3.39
SCARF1-208ENST00000574545 MRC2Q9UBG0 1479 aa36.25■■■■□ 3.39
SCARF1-208ENST00000574545 FANCD2Q9BXW9 1451 aa36.24■■■■□ 3.39
SCARF1-208ENST00000574545 DNAJC5Q9H3Z4 198 aa36.22■■■■□ 3.39
SCARF1-208ENST00000574545 CEP164Q9UPV0 1460 aa36.2■■■■□ 3.39
SCARF1-208ENST00000574545 WDR62O43379 1518 aa36.17■■■■□ 3.38
SCARF1-208ENST00000574545 PRDM2Q13029 1718 aa35.96■■■■□ 3.35
SCARF1-208ENST00000574545 URB2Q14146 1524 aaKnown RBP35.93■■■■□ 3.34
SCARF1-208ENST00000574545 SUPT5HO00267 1087 aaKnown RBP35.65■■■■□ 3.3
SCARF1-208ENST00000574545 TOPBP1Q92547 1522 aa35.62■■■■□ 3.29
SCARF1-208ENST00000574545 ABCC8Q09428 1581 aa35.58■■■■□ 3.29
SCARF1-208ENST00000574545 DNMBPQ6XZF7 1577 aa35.51■■■■□ 3.28
SCARF1-208ENST00000574545 IFT140Q96RY7 1462 aa35.49■■■■□ 3.27
SCARF1-208ENST00000574545 ZNF608Q9ULD9 1512 aaPredicted RBP35.4■■■■□ 3.26
SCARF1-208ENST00000574545 POLA1P09884 1462 aaPredicted RBP35.3■■■■□ 3.24
SCARF1-208ENST00000574545 TARBP1Q13395 1621 aaKnown RBP35.28■■■■□ 3.24
SCARF1-208ENST00000574545 CUX1P39880 1505 aa35.21■■■■□ 3.23
SCARF1-208ENST00000574545 OSCARQ8IYS5 282 aa35.2■■■■□ 3.23
SCARF1-208ENST00000574545 RAD54L2Q9Y4B4 1467 aa35.17■■■■□ 3.22
SCARF1-208ENST00000574545 EIF4G3O43432 1585 aaKnown RBP35.17■■■■□ 3.22
SCARF1-208ENST00000574545 AQRO60306 1485 aaKnown RBP eCLIP35.15■■■■□ 3.22
SCARF1-208ENST00000574545 SOGA1O94964 1423 aa35.15■■■■□ 3.22
SCARF1-208ENST00000574545 FGD5Q6ZNL6 1462 aa35.14■■■■□ 3.22
SCARF1-208ENST00000574545 TDRD9Q8NDG6 1382 aaKnown RBP35.01■■■■□ 3.2
SCARF1-208ENST00000574545 WDR97A6NE52 1622 aa34.92■■■■□ 3.18
SCARF1-208ENST00000574545 WRNQ14191 1432 aaPredicted RBP eCLIP34.81■■■■□ 3.16
SCARF1-208ENST00000574545 ABCA10Q8WWZ4 1543 aa34.8■■■■□ 3.16
SCARF1-208ENST00000574545 CHD1O14646 1710 aa34.78■■■■□ 3.16
SCARF1-208ENST00000574545 TOP2BQ02880 1626 aa34.77■■■■□ 3.16
SCARF1-208ENST00000574545 GRIN2BQ13224 1484 aa34.77■■■■□ 3.16
SCARF1-208ENST00000574545 SNAPC4Q5SXM2 1469 aa34.77■■■■□ 3.16
SCARF1-208ENST00000574545 BIVM-ERCC5R4GMW8 1640 aa34.76■■■■□ 3.15
SCARF1-208ENST00000574545 SYNJ1O43426 1573 aa34.74■■■■□ 3.15
SCARF1-208ENST00000574545 FBLN2P98095 1184 aa34.74■■■■□ 3.15
SCARF1-208ENST00000574545 TRIM41Q8WV44 630 aa34.73■■■■□ 3.15
SCARF1-208ENST00000574545 GAPVD1Q14C86 1478 aa34.71■■■■□ 3.15
SCARF1-208ENST00000574545 MAGI1Q96QZ7 1491 aaPredicted RBP34.71■■■■□ 3.15
SCARF1-208ENST00000574545 ABCA5Q8WWZ7 1642 aa34.66■■■■□ 3.14
SCARF1-208ENST00000574545 RIMBP3CA6NJZ7 1639 aa34.63■■■■□ 3.13
SCARF1-208ENST00000574545 RIMBP3BA6NNM3 1639 aa34.63■■■■□ 3.13
SCARF1-208ENST00000574545 RIMBP3Q9UFD9 1639 aa34.63■■■■□ 3.13
SCARF1-208ENST00000574545 CHMP7Q8WUX9 453 aaPredicted RBP34.61■■■■□ 3.13
SCARF1-208ENST00000574545 ARHGEF11O15085 1522 aa34.6■■■■□ 3.13
SCARF1-208ENST00000574545 PBRM1Q86U86 1689 aa34.6■■■■□ 3.13
SCARF1-208ENST00000574545 SYNJ2O15056 1496 aa34.59■■■■□ 3.13
SCARF1-208ENST00000574545 CLASP1Q7Z460 1538 aa34.48■■■■□ 3.11
SCARF1-208ENST00000574545 ERICH3Q5RHP9 1530 aa34.35■■■■□ 3.09
SCARF1-208ENST00000574545 ADAMTS12P58397 1594 aa34.34■■■■□ 3.09
SCARF1-208ENST00000574545 CYB5RLQ6IPT4 315 aa34.33■■■■□ 3.09
SCARF1-208ENST00000574545 GRIN2AQ12879 1464 aa34.33■■■■□ 3.09
SCARF1-208ENST00000574545 ARAP1Q96P48 1450 aa34.33■■■■□ 3.09
SCARF1-208ENST00000574545 FHAD1B1AJZ9 1412 aa34.31■■■■□ 3.08
SCARF1-208ENST00000574545 NUP160Q12769 1436 aa34.23■■■■□ 3.07
SCARF1-208ENST00000574545 CEP170Q5SW79 1584 aa34.17■■■■□ 3.06
SCARF1-208ENST00000574545 IGF1RP08069 1367 aa34.11■■■■□ 3.05
SCARF1-208ENST00000574545 KIF27Q86VH2 1401 aa34.11■■■■□ 3.05
SCARF1-208ENST00000574545 ERCC6L2Q5T890 1561 aa33.98■■■■□ 3.03
SCARF1-208ENST00000574545 SHROOM2Q13796 1616 aa33.98■■■■□ 3.03
SCARF1-208ENST00000574545 CUL7Q14999 1698 aa33.9■■■■□ 3.02
SCARF1-208ENST00000574545 JPH4Q96JJ6 628 aa33.89■■■■□ 3.02
SCARF1-208ENST00000574545 CARMIL1Q5VZK9 1371 aa33.85■■■■□ 3.01
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms