RNA–Protein interactions for RNA: ENST00000574109.5

NDE1-209, Transcript of nudE neurodevelopment protein 1, humanhuman

TSL 3

Gene NDE1, Length 843 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NDE1-209ENST00000574109 NISCHQ9Y2I1 1504 aa32.42■■■□□ 2.78
NDE1-209ENST00000574109 CCDC180Q9P1Z9 1646 aa28.9■■■□□ 2.22
NDE1-209ENST00000574109 ABCC9O60706 1549 aa27.59■■■□□ 2.01
NDE1-209ENST00000574109 ZCCHC6Q5VYS8 1495 aaKnown RBP27.14■■□□□ 1.94
NDE1-209ENST00000574109 MYO15BQ96JP2 1530 aa26.99■■□□□ 1.91
NDE1-209ENST00000574109 DCAF1Q9Y4B6 1507 aa26.98■■□□□ 1.91
NDE1-209ENST00000574109 NACADO15069 1562 aa26.97■■□□□ 1.91
NDE1-209ENST00000574109 RB1CC1Q8TDY2 1594 aa26.92■■□□□ 1.9
NDE1-209ENST00000574109 DCAF8L2P0C7V8 631 aa26.64■■□□□ 1.86
NDE1-209ENST00000574109 UNC13AQ9UPW8 1703 aa26.34■■□□□ 1.81
NDE1-209ENST00000574109 SCRIBQ14160 1630 aa26.19■■□□□ 1.78
NDE1-209ENST00000574109 BICRAQ9NZM4 1560 aa25.99■■□□□ 1.75
NDE1-209ENST00000574109 SHROOM4Q9ULL8 1493 aa25.98■■□□□ 1.75
NDE1-209ENST00000574109 PABPN1Q86U42 306 aaKnown RBP eCLIP25.68■■□□□ 1.7
NDE1-209ENST00000574109 EIF4G1Q04637 1599 aaKnown RBP25.31■■□□□ 1.64
NDE1-209ENST00000574109 BAZ1AQ9NRL2 1556 aaPredicted RBP25.19■■□□□ 1.62
NDE1-209ENST00000574109 SMARCA4P51532 1647 aa25.15■■□□□ 1.62
NDE1-209ENST00000574109 CC2D2AQ9P2K1 1620 aa25.09■■□□□ 1.61
NDE1-209ENST00000574109 CECR2Q9BXF3 1484 aa25.08■■□□□ 1.6
NDE1-209ENST00000574109 PEG3Q9GZU2 1588 aa24.95■■□□□ 1.58
NDE1-209ENST00000574109 SMARCA2P51531 1590 aa24.94■■□□□ 1.58
NDE1-209ENST00000574109 MROH2BQ7Z745 1585 aa24.93■■□□□ 1.58
NDE1-209ENST00000574109 HMGXB3Q12766 1538 aa24.82■■□□□ 1.56
NDE1-209ENST00000574109 ATAD2BQ9ULI0 1458 aa24.82■■□□□ 1.56
NDE1-209ENST00000574109 NCAPD3P42695 1498 aa24.77■■□□□ 1.56
NDE1-209ENST00000574109 DNAJC5BQ9UF47 199 aa24.77■■□□□ 1.56
NDE1-209ENST00000574109 RSF1Q96T23 1441 aaPredicted RBP24.76■■□□□ 1.55
NDE1-209ENST00000574109 WIZO95785 1651 aa24.72■■□□□ 1.55
NDE1-209ENST00000574109 BAZ1BQ9UIG0 1483 aaKnown RBP24.7■■□□□ 1.54
NDE1-209ENST00000574109 TOP2AP11388 1531 aaKnown RBP24.57■■□□□ 1.52
NDE1-209ENST00000574109 SUPT5HO00267 1087 aaKnown RBP24.23■■□□□ 1.47
NDE1-209ENST00000574109 LAMC3Q9Y6N6 1575 aa24.19■■□□□ 1.46
NDE1-209ENST00000574109 PRDM2Q13029 1718 aa24.14■■□□□ 1.45
NDE1-209ENST00000574109 CCDC88BA6NC98 1476 aa24.13■■□□□ 1.45
NDE1-209ENST00000574109 CADPSQ9ULU8 1353 aa24.03■■□□□ 1.44
NDE1-209ENST00000574109 CFTRP13569 1480 aa24.01■■□□□ 1.43
NDE1-209ENST00000574109 NESP48681 1621 aa23.96■■□□□ 1.43
NDE1-209ENST00000574109 PDS5BQ9NTI5 1447 aa23.92■■□□□ 1.42
NDE1-209ENST00000574109 KIF21AQ7Z4S6 1674 aa23.88■■□□□ 1.41
NDE1-209ENST00000574109 ERCC6Q03468 1493 aa23.85■■□□□ 1.41
NDE1-209ENST00000574109 FANCD2Q9BXW9 1451 aa23.8■■□□□ 1.4
NDE1-209ENST00000574109 CEP164Q9UPV0 1460 aa23.79■■□□□ 1.4
NDE1-209ENST00000574109 THOC2Q8NI27 1593 aaKnown RBP23.73■■□□□ 1.39
NDE1-209ENST00000574109 MRC2Q9UBG0 1479 aa23.67■■□□□ 1.38
NDE1-209ENST00000574109 WDR62O43379 1518 aa23.62■■□□□ 1.37
NDE1-209ENST00000574109 ABCC8Q09428 1581 aa23.58■■□□□ 1.37
NDE1-209ENST00000574109 DNMBPQ6XZF7 1577 aa23.55■■□□□ 1.36
NDE1-209ENST00000574109 CUX2O14529 1486 aa23.55■■□□□ 1.36
NDE1-209ENST00000574109 URB2Q14146 1524 aaKnown RBP23.51■■□□□ 1.35
NDE1-209ENST00000574109 TOPBP1Q92547 1522 aa23.47■■□□□ 1.35
NDE1-209ENST00000574109 BIVM-ERCC5R4GMW8 1640 aa23.44■■□□□ 1.34
NDE1-209ENST00000574109 CUX1P39880 1505 aa23.4■■□□□ 1.34
NDE1-209ENST00000574109 TOP2BQ02880 1626 aa23.4■■□□□ 1.34
NDE1-209ENST00000574109 WRNQ14191 1432 aaPredicted RBP eCLIP23.39■■□□□ 1.33
NDE1-209ENST00000574109 SYNJ1O43426 1573 aa23.33■■□□□ 1.33
NDE1-209ENST00000574109 POLA1P09884 1462 aaPredicted RBP23.28■■□□□ 1.32
NDE1-209ENST00000574109 FGD5Q6ZNL6 1462 aa23.28■■□□□ 1.32
NDE1-209ENST00000574109 IFT140Q96RY7 1462 aa23.26■■□□□ 1.31
NDE1-209ENST00000574109 WDR97A6NE52 1622 aa23.25■■□□□ 1.31
NDE1-209ENST00000574109 TARBP1Q13395 1621 aaKnown RBP23.22■■□□□ 1.31
NDE1-209ENST00000574109 SOGA1O94964 1423 aa23.12■■□□□ 1.29
NDE1-209ENST00000574109 ABCA10Q8WWZ4 1543 aa23.12■■□□□ 1.29
NDE1-209ENST00000574109 EIF4G3O43432 1585 aaKnown RBP23.1■■□□□ 1.29
NDE1-209ENST00000574109 RAD54L2Q9Y4B4 1467 aa23.07■■□□□ 1.28
NDE1-209ENST00000574109 ABCA5Q8WWZ7 1642 aa23.05■■□□□ 1.28
NDE1-209ENST00000574109 PBRM1Q86U86 1689 aa23.01■■□□□ 1.27
NDE1-209ENST00000574109 ZNF608Q9ULD9 1512 aaPredicted RBP23■■□□□ 1.27
NDE1-209ENST00000574109 TRIM41Q8WV44 630 aa22.95■■□□□ 1.26
NDE1-209ENST00000574109 GAPVD1Q14C86 1478 aa22.93■■□□□ 1.26
NDE1-209ENST00000574109 GRIN2BQ13224 1484 aa22.91■■□□□ 1.26
NDE1-209ENST00000574109 ERICH3Q5RHP9 1530 aa22.9■■□□□ 1.26
NDE1-209ENST00000574109 KIF27Q86VH2 1401 aa22.9■■□□□ 1.26
NDE1-209ENST00000574109 AQRO60306 1485 aaKnown RBP eCLIP22.88■■□□□ 1.256e-7■□□□□ 10.1
NDE1-209ENST00000574109 TDRD9Q8NDG6 1382 aaKnown RBP22.88■■□□□ 1.25
NDE1-209ENST00000574109 MAGI1Q96QZ7 1491 aaPredicted RBP22.86■■□□□ 1.25
NDE1-209ENST00000574109 CHIC1Q5VXU3 224 aa22.86■■□□□ 1.25
NDE1-209ENST00000574109 CUL7Q14999 1698 aa22.84■■□□□ 1.25
NDE1-209ENST00000574109 ADAMTS12P58397 1594 aa22.8■■□□□ 1.24
NDE1-209ENST00000574109 EEA1Q15075 1411 aa22.79■■□□□ 1.24
NDE1-209ENST00000574109 SNAPC4Q5SXM2 1469 aa22.79■■□□□ 1.24
NDE1-209ENST00000574109 CHD1O14646 1710 aa22.76■■□□□ 1.23
NDE1-209ENST00000574109 SYNJ2O15056 1496 aa22.73■■□□□ 1.23
NDE1-209ENST00000574109 FHAD1B1AJZ9 1412 aa22.69■■□□□ 1.22
NDE1-209ENST00000574109 IGF1RP08069 1367 aa22.63■■□□□ 1.21
NDE1-209ENST00000574109 RUSC2Q8N2Y8 1516 aa22.62■■□□□ 1.21
NDE1-209ENST00000574109 GRIN2AQ12879 1464 aa22.61■■□□□ 1.21
NDE1-209ENST00000574109 CARMIL1Q5VZK9 1371 aa22.55■■□□□ 1.2
NDE1-209ENST00000574109 KIF21BO75037 1637 aa22.54■■□□□ 1.2
NDE1-209ENST00000574109 CHMP7Q8WUX9 453 aaPredicted RBP22.54■■□□□ 1.2
NDE1-209ENST00000574109 RAPGEF2Q9Y4G8 1499 aa22.54■■□□□ 1.2
NDE1-209ENST00000574109 PRXQ9BXM0 1461 aa22.53■■□□□ 1.2
NDE1-209ENST00000574109 NUP160Q12769 1436 aa22.49■■□□□ 1.19
NDE1-209ENST00000574109 CLASP1Q7Z460 1538 aa22.48■■□□□ 1.19
NDE1-209ENST00000574109 CTTNBP2Q8WZ74 1663 aa22.48■■□□□ 1.19
NDE1-209ENST00000574109 CEP170Q5SW79 1584 aa22.47■■□□□ 1.19
NDE1-209ENST00000574109 FBLN2P98095 1184 aa22.47■■□□□ 1.19
NDE1-209ENST00000574109 CSRNP3Q8WYN3 585 aa22.47■■□□□ 1.19
NDE1-209ENST00000574109 OSCARQ8IYS5 282 aa22.44■■□□□ 1.18
NDE1-209ENST00000574109 SHROOM2Q13796 1616 aa22.37■■□□□ 1.17
NDE1-209ENST00000574109 IQGAP2Q13576 1575 aa22.37■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms