RNA–Protein interactions for RNA: ENST00000574003.1

RPAIN-214, Transcript of RPA interacting protein, humanhuman

TSL 4 BASIC

Gene RPAIN, Length 561 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPAIN-214ENST00000574003 NISCHQ9Y2I1 1504 aa28.02■■■□□ 2.08
RPAIN-214ENST00000574003 CCDC180Q9P1Z9 1646 aa24.97■■□□□ 1.59
RPAIN-214ENST00000574003 ABCC9O60706 1549 aa24.9■■□□□ 1.58
RPAIN-214ENST00000574003 DCAF8L2P0C7V8 631 aa23.68■■□□□ 1.38
RPAIN-214ENST00000574003 RB1CC1Q8TDY2 1594 aa23.68■■□□□ 1.38
RPAIN-214ENST00000574003 NACADO15069 1562 aa23.57■■□□□ 1.36
RPAIN-214ENST00000574003 ZCCHC6Q5VYS8 1495 aaKnown RBP23.28■■□□□ 1.32
RPAIN-214ENST00000574003 PABPN1Q86U42 306 aaKnown RBP eCLIP23.27■■□□□ 1.32
RPAIN-214ENST00000574003 MYO15BQ96JP2 1530 aa23.26■■□□□ 1.31
RPAIN-214ENST00000574003 UNC13AQ9UPW8 1703 aa23.22■■□□□ 1.31
RPAIN-214ENST00000574003 DNAJC5BQ9UF47 199 aa23.21■■□□□ 1.31
RPAIN-214ENST00000574003 DCAF1Q9Y4B6 1507 aa23.08■■□□□ 1.28
RPAIN-214ENST00000574003 BICRAQ9NZM4 1560 aa23.06■■□□□ 1.28
RPAIN-214ENST00000574003 SCRIBQ14160 1630 aa22.9■■□□□ 1.26
RPAIN-214ENST00000574003 SHROOM4Q9ULL8 1493 aa22.6■■□□□ 1.21
RPAIN-214ENST00000574003 CC2D2AQ9P2K1 1620 aa22.46■■□□□ 1.19
RPAIN-214ENST00000574003 EIF4G1Q04637 1599 aaKnown RBP22.45■■□□□ 1.18
RPAIN-214ENST00000574003 CECR2Q9BXF3 1484 aa22.35■■□□□ 1.17
RPAIN-214ENST00000574003 SMARCA4P51532 1647 aa21.82■■□□□ 1.08
RPAIN-214ENST00000574003 ATAD2BQ9ULI0 1458 aa21.79■■□□□ 1.08
RPAIN-214ENST00000574003 NCAPD3P42695 1498 aa21.77■■□□□ 1.08
RPAIN-214ENST00000574003 BAZ1AQ9NRL2 1556 aaPredicted RBP21.7■■□□□ 1.06
RPAIN-214ENST00000574003 SMARCA2P51531 1590 aa21.68■■□□□ 1.06
RPAIN-214ENST00000574003 MROH2BQ7Z745 1585 aa21.66■■□□□ 1.06
RPAIN-214ENST00000574003 HMGXB3Q12766 1538 aa21.61■■□□□ 1.05
RPAIN-214ENST00000574003 BAZ1BQ9UIG0 1483 aaKnown RBP21.58■■□□□ 1.04
RPAIN-214ENST00000574003 PEG3Q9GZU2 1588 aa21.54■■□□□ 1.04
RPAIN-214ENST00000574003 NESP48681 1621 aa21.48■■□□□ 1.03
RPAIN-214ENST00000574003 WIZO95785 1651 aa21.42■■□□□ 1.02
RPAIN-214ENST00000574003 ERCC6Q03468 1493 aa21.42■■□□□ 1.02
RPAIN-214ENST00000574003 RSF1Q96T23 1441 aaPredicted RBP21.28■■□□□ 1
RPAIN-214ENST00000574003 CUX2O14529 1486 aa21.24■□□□□ 0.99
RPAIN-214ENST00000574003 LAMC3Q9Y6N6 1575 aa21.23■□□□□ 0.99
RPAIN-214ENST00000574003 KIF21AQ7Z4S6 1674 aa21.15■□□□□ 0.98
RPAIN-214ENST00000574003 CADPSQ9ULU8 1353 aa21.15■□□□□ 0.98
RPAIN-214ENST00000574003 THOC2Q8NI27 1593 aaKnown RBP21.14■□□□□ 0.97
RPAIN-214ENST00000574003 PDS5BQ9NTI5 1447 aa21.11■□□□□ 0.97
RPAIN-214ENST00000574003 TOP2AP11388 1531 aaKnown RBP21.1■□□□□ 0.97
RPAIN-214ENST00000574003 DNAJC5Q9H3Z4 198 aa21.02■□□□□ 0.96
RPAIN-214ENST00000574003 CFTRP13569 1480 aa20.95■□□□□ 0.94
RPAIN-214ENST00000574003 MRC2Q9UBG0 1479 aa20.94■□□□□ 0.94
RPAIN-214ENST00000574003 FANCD2Q9BXW9 1451 aa20.93■□□□□ 0.94
RPAIN-214ENST00000574003 CCDC88BA6NC98 1476 aa20.91■□□□□ 0.94
RPAIN-214ENST00000574003 CEP164Q9UPV0 1460 aa20.91■□□□□ 0.94
RPAIN-214ENST00000574003 WDR62O43379 1518 aa20.88■□□□□ 0.93
RPAIN-214ENST00000574003 URB2Q14146 1524 aaKnown RBP20.77■□□□□ 0.92
RPAIN-214ENST00000574003 PRDM2Q13029 1718 aa20.73■□□□□ 0.91
RPAIN-214ENST00000574003 SUPT5HO00267 1087 aaKnown RBP20.62■□□□□ 0.89
RPAIN-214ENST00000574003 TOPBP1Q92547 1522 aa20.57■□□□□ 0.88
RPAIN-214ENST00000574003 ZNF608Q9ULD9 1512 aaPredicted RBP20.51■□□□□ 0.87
RPAIN-214ENST00000574003 DNMBPQ6XZF7 1577 aa20.48■□□□□ 0.87
RPAIN-214ENST00000574003 IFT140Q96RY7 1462 aa20.47■□□□□ 0.87
RPAIN-214ENST00000574003 ABCC8Q09428 1581 aa20.43■□□□□ 0.86
RPAIN-214ENST00000574003 POLA1P09884 1462 aaPredicted RBP20.37■□□□□ 0.85
RPAIN-214ENST00000574003 OSCARQ8IYS5 282 aa20.36■□□□□ 0.85
RPAIN-214ENST00000574003 RAD54L2Q9Y4B4 1467 aa20.36■□□□□ 0.85
RPAIN-214ENST00000574003 TARBP1Q13395 1621 aaKnown RBP20.35■□□□□ 0.85
RPAIN-214ENST00000574003 AQRO60306 1485 aaKnown RBP eCLIP20.35■□□□□ 0.853e-7■■■□□ 18.2
RPAIN-214ENST00000574003 EIF4G3O43432 1585 aaKnown RBP20.34■□□□□ 0.85
RPAIN-214ENST00000574003 CUX1P39880 1505 aa20.32■□□□□ 0.84
RPAIN-214ENST00000574003 TRIM41Q8WV44 630 aa20.3■□□□□ 0.84
RPAIN-214ENST00000574003 FGD5Q6ZNL6 1462 aa20.3■□□□□ 0.84
RPAIN-214ENST00000574003 SOGA1O94964 1423 aa20.29■□□□□ 0.84
RPAIN-214ENST00000574003 TDRD9Q8NDG6 1382 aaKnown RBP20.26■□□□□ 0.83
RPAIN-214ENST00000574003 FBLN2P98095 1184 aa20.18■□□□□ 0.82
RPAIN-214ENST00000574003 CHD1O14646 1710 aa20.17■□□□□ 0.82
RPAIN-214ENST00000574003 SNAPC4Q5SXM2 1469 aa20.12■□□□□ 0.81
RPAIN-214ENST00000574003 WDR97A6NE52 1622 aa20.1■□□□□ 0.81
RPAIN-214ENST00000574003 RIMBP3CA6NJZ7 1639 aa20.09■□□□□ 0.81
RPAIN-214ENST00000574003 RIMBP3BA6NNM3 1639 aa20.09■□□□□ 0.81
RPAIN-214ENST00000574003 RIMBP3Q9UFD9 1639 aa20.09■□□□□ 0.81
RPAIN-214ENST00000574003 SYNJ1O43426 1573 aa20.06■□□□□ 0.8
RPAIN-214ENST00000574003 ARHGEF11O15085 1522 aa20.05■□□□□ 0.8
RPAIN-214ENST00000574003 GRIN2BQ13224 1484 aa20.05■□□□□ 0.8
RPAIN-214ENST00000574003 WRNQ14191 1432 aaPredicted RBP eCLIP20.04■□□□□ 0.8
RPAIN-214ENST00000574003 ABCA10Q8WWZ4 1543 aa20.03■□□□□ 0.8
RPAIN-214ENST00000574003 GAPVD1Q14C86 1478 aa20.03■□□□□ 0.8
RPAIN-214ENST00000574003 CHMP7Q8WUX9 453 aaPredicted RBP20.01■□□□□ 0.79
RPAIN-214ENST00000574003 TOP2BQ02880 1626 aa20.01■□□□□ 0.79
RPAIN-214ENST00000574003 BIVM-ERCC5R4GMW8 1640 aa20.01■□□□□ 0.79
RPAIN-214ENST00000574003 PBRM1Q86U86 1689 aa20■□□□□ 0.79
RPAIN-214ENST00000574003 MAGI1Q96QZ7 1491 aaPredicted RBP20■□□□□ 0.79
RPAIN-214ENST00000574003 ABCA5Q8WWZ7 1642 aa19.99■□□□□ 0.79
RPAIN-214ENST00000574003 SYNJ2O15056 1496 aa19.95■□□□□ 0.78
RPAIN-214ENST00000574003 CYB5RLQ6IPT4 315 aa19.94■□□□□ 0.78
RPAIN-214ENST00000574003 CLASP1Q7Z460 1538 aa19.92■□□□□ 0.78
RPAIN-214ENST00000574003 ARAP1Q96P48 1450 aa19.89■□□□□ 0.77
RPAIN-214ENST00000574003 ADAMTS12P58397 1594 aa19.83■□□□□ 0.77
RPAIN-214ENST00000574003 GRIN2AQ12879 1464 aa19.8■□□□□ 0.76
RPAIN-214ENST00000574003 FHAD1B1AJZ9 1412 aa19.76■□□□□ 0.75
RPAIN-214ENST00000574003 CEP170Q5SW79 1584 aa19.76■□□□□ 0.75
RPAIN-214ENST00000574003 ERICH3Q5RHP9 1530 aa19.76■□□□□ 0.75
RPAIN-214ENST00000574003 NUP160Q12769 1436 aa19.72■□□□□ 0.75
RPAIN-214ENST00000574003 ERCC6L2Q5T890 1561 aa19.72■□□□□ 0.75
RPAIN-214ENST00000574003 IGF1RP08069 1367 aa19.63■□□□□ 0.73
RPAIN-214ENST00000574003 TRHP20396 242 aaPredicted RBP19.63■□□□□ 0.73
RPAIN-214ENST00000574003 KIF27Q86VH2 1401 aa19.62■□□□□ 0.73
RPAIN-214ENST00000574003 SHROOM2Q13796 1616 aa19.6■□□□□ 0.73
RPAIN-214ENST00000574003 JPH4Q96JJ6 628 aa19.56■□□□□ 0.72
RPAIN-214ENST00000574003 PRG4Q92954 1404 aaPredicted RBP19.55■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms