RNA–Protein interactions for RNA: ENST00000573924.1

RPA1-205, Transcript of replication protein A1, humanhuman

TSL 4

Gene RPA1, Length 574 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPA1-205ENST00000573924 CHIC1Q5VXU3 224 aa18.32■□□□□ 0.52
RPA1-205ENST00000573924 NISCHQ9Y2I1 1504 aa18.06■□□□□ 0.48
RPA1-205ENST00000573924 AEBP2Q6ZN18 517 aaPredicted RBP17.95■□□□□ 0.46
RPA1-205ENST00000573924 ABCC9O60706 1549 aa16.49■□□□□ 0.23
RPA1-205ENST00000573924 CCDC180Q9P1Z9 1646 aa16.35■□□□□ 0.21
RPA1-205ENST00000573924 PHF23Q9BUL5 403 aaPredicted RBP16.08■□□□□ 0.16
RPA1-205ENST00000573924 RB1CC1Q8TDY2 1594 aa15.7■□□□□ 0.1
RPA1-205ENST00000573924 NACADO15069 1562 aa15.54■□□□□ 0.08
RPA1-205ENST00000573924 DNAJC5BQ9UF47 199 aa15.54■□□□□ 0.08
RPA1-205ENST00000573924 DCAF8L2P0C7V8 631 aa15.4■□□□□ 0.06
RPA1-205ENST00000573924 PABPN1Q86U42 306 aaKnown RBP eCLIP15.3■□□□□ 0.04
RPA1-205ENST00000573924 SENP3Q9H4L4 574 aaPredicted RBP15.29■□□□□ 0.04
RPA1-205ENST00000573924 MYO15BQ96JP2 1530 aa15.27■□□□□ 0.03
RPA1-205ENST00000573924 PLPPR3Q6T4P5 718 aa15.24■□□□□ 0.03
RPA1-205ENST00000573924 UNC13AQ9UPW8 1703 aa15.17■□□□□ 0.02
RPA1-205ENST00000573924 SHROOM4Q9ULL8 1493 aa15.09■□□□□ 0.01
RPA1-205ENST00000573924 BICRAQ9NZM4 1560 aa15.09■□□□□ 0.01
RPA1-205ENST00000573924 DCAF1Q9Y4B6 1507 aa14.97□□□□□ -0.01
RPA1-205ENST00000573924 CECR2Q9BXF3 1484 aa14.93□□□□□ -0.02
RPA1-205ENST00000573924 ZCCHC6Q5VYS8 1495 aaKnown RBP14.9□□□□□ -0.02
RPA1-205ENST00000573924 CC2D2AQ9P2K1 1620 aa14.88□□□□□ -0.03
RPA1-205ENST00000573924 EIF4G1Q04637 1599 aaKnown RBP14.81□□□□□ -0.04
RPA1-205ENST00000573924 SCRIBQ14160 1630 aa14.8□□□□□ -0.04
RPA1-205ENST00000573924 DNAJC5Q9H3Z4 198 aa14.6□□□□□ -0.07
RPA1-205ENST00000573924 CUX2O14529 1486 aa14.4□□□□□ -0.1
RPA1-205ENST00000573924 ERCC6Q03468 1493 aa14.37□□□□□ -0.11
RPA1-205ENST00000573924 NCAPD3P42695 1498 aa14.31□□□□□ -0.12
RPA1-205ENST00000573924 SMARCA2P51531 1590 aa14.23□□□□□ -0.13
RPA1-205ENST00000573924 ATAD2BQ9ULI0 1458 aa14.2□□□□□ -0.14
RPA1-205ENST00000573924 HMGXB3Q12766 1538 aa14.2□□□□□ -0.14
RPA1-205ENST00000573924 SMARCA4P51532 1647 aa14.12□□□□□ -0.15
RPA1-205ENST00000573924 BAZ1BQ9UIG0 1483 aaKnown RBP14.11□□□□□ -0.15
RPA1-205ENST00000573924 BAZ1AQ9NRL2 1556 aaPredicted RBP14.1□□□□□ -0.15
RPA1-205ENST00000573924 LAMC3Q9Y6N6 1575 aa14.05□□□□□ -0.16
RPA1-205ENST00000573924 ADRA2BP18089 450 aa14.05□□□□□ -0.16
RPA1-205ENST00000573924 NESP48681 1621 aa14.04□□□□□ -0.16
RPA1-205ENST00000573924 PDS5BQ9NTI5 1447 aa14.03□□□□□ -0.16
RPA1-205ENST00000573924 PEG3Q9GZU2 1588 aa14.01□□□□□ -0.17
RPA1-205ENST00000573924 FOXD1Q16676 465 aa13.99□□□□□ -0.17
RPA1-205ENST00000573924 THOC2Q8NI27 1593 aaKnown RBP13.97□□□□□ -0.17
RPA1-205ENST00000573924 PPP6R1Q9UPN7 881 aa13.94□□□□□ -0.18
RPA1-205ENST00000573924 CADPSQ9ULU8 1353 aa13.88□□□□□ -0.19
RPA1-205ENST00000573924 KIF21AQ7Z4S6 1674 aa13.88□□□□□ -0.19
RPA1-205ENST00000573924 TRIM41Q8WV44 630 aa13.87□□□□□ -0.19
RPA1-205ENST00000573924 MROH2BQ7Z745 1585 aa13.85□□□□□ -0.19
RPA1-205ENST00000573924 MRC2Q9UBG0 1479 aa13.85□□□□□ -0.19
RPA1-205ENST00000573924 KCNA4P22459 653 aa13.84□□□□□ -0.19
RPA1-205ENST00000573924 WDR62O43379 1518 aa13.79□□□□□ -0.2
RPA1-205ENST00000573924 CEP164Q9UPV0 1460 aa13.77□□□□□ -0.21
RPA1-205ENST00000573924 OSCARQ8IYS5 282 aa13.74□□□□□ -0.21
RPA1-205ENST00000573924 FANCD2Q9BXW9 1451 aa13.7□□□□□ -0.22
RPA1-205ENST00000573924 WIZO95785 1651 aa13.66□□□□□ -0.22
RPA1-205ENST00000573924 EHMT2Q96KQ7 1210 aa13.66□□□□□ -0.22
RPA1-205ENST00000573924 CFTRP13569 1480 aa13.65□□□□□ -0.22
RPA1-205ENST00000573924 TOP2AP11388 1531 aaKnown RBP13.56□□□□□ -0.24
RPA1-205ENST00000573924 URB2Q14146 1524 aaKnown RBP13.54□□□□□ -0.24
RPA1-205ENST00000573924 RSF1Q96T23 1441 aaPredicted RBP13.52□□□□□ -0.25
RPA1-205ENST00000573924 IFT140Q96RY7 1462 aa13.51□□□□□ -0.25
RPA1-205ENST00000573924 ABCC8Q09428 1581 aa13.49□□□□□ -0.25
RPA1-205ENST00000573924 PRDM2Q13029 1718 aa13.49□□□□□ -0.25
RPA1-205ENST00000573924 RIMBP3CA6NJZ7 1639 aa13.46□□□□□ -0.26
RPA1-205ENST00000573924 RIMBP3BA6NNM3 1639 aa13.46□□□□□ -0.26
RPA1-205ENST00000573924 RIMBP3Q9UFD9 1639 aa13.46□□□□□ -0.26
RPA1-205ENST00000573924 PPP4R3CPQ6ZMV5 832 aa13.44□□□□□ -0.26
RPA1-205ENST00000573924 ARHGEF11O15085 1522 aa13.42□□□□□ -0.26
RPA1-205ENST00000573924 NCBP3Q53F19 620 aaKnown RBP13.4□□□□□ -0.26
RPA1-205ENST00000573924 TOPBP1Q92547 1522 aa13.39□□□□□ -0.27
RPA1-205ENST00000573924 PIAS4Q8N2W9 510 aaPredicted RBP13.39□□□□□ -0.27
RPA1-205ENST00000573924 ZNF608Q9ULD9 1512 aaPredicted RBP13.39□□□□□ -0.27
RPA1-205ENST00000573924 CCDC88BA6NC98 1476 aa13.37□□□□□ -0.27
RPA1-205ENST00000573924 CYB5RLQ6IPT4 315 aa13.37□□□□□ -0.27
RPA1-205ENST00000573924 TRHP20396 242 aaPredicted RBP13.36□□□□□ -0.27
RPA1-205ENST00000573924 SLC4A1APQ9BWU0 796 aaKnown RBP13.36□□□□□ -0.27
RPA1-205ENST00000573924 DNMBPQ6XZF7 1577 aa13.36□□□□□ -0.27
RPA1-205ENST00000573924 EIF4G3O43432 1585 aaKnown RBP13.35□□□□□ -0.27
RPA1-205ENST00000573924 FBLN2P98095 1184 aa13.34□□□□□ -0.27
RPA1-205ENST00000573924 AQRO60306 1485 aaKnown RBP eCLIP13.27□□□□□ -0.291e-6■■□□□ 11.4
RPA1-205ENST00000573924 CHD1O14646 1710 aa13.27□□□□□ -0.29
RPA1-205ENST00000573924 WDR97A6NE52 1622 aa13.25□□□□□ -0.29
RPA1-205ENST00000573924 TARBP1Q13395 1621 aaKnown RBP13.25□□□□□ -0.29
RPA1-205ENST00000573924 CSRNP3Q8WYN3 585 aa13.25□□□□□ -0.29
RPA1-205ENST00000573924 POLA1P09884 1462 aaPredicted RBP13.23□□□□□ -0.29
RPA1-205ENST00000573924 CHMP7Q8WUX9 453 aaPredicted RBP13.23□□□□□ -0.29
RPA1-205ENST00000573924 ARAP1Q96P48 1450 aa13.23□□□□□ -0.29
RPA1-205ENST00000573924 SOGA1O94964 1423 aa13.22□□□□□ -0.29
RPA1-205ENST00000573924 SYNJ1O43426 1573 aa13.2□□□□□ -0.3
RPA1-205ENST00000573924 MAGI1Q96QZ7 1491 aaPredicted RBP13.19□□□□□ -0.3
RPA1-205ENST00000573924 TDRD9Q8NDG6 1382 aaKnown RBP13.19□□□□□ -0.3
RPA1-205ENST00000573924 GRIN2BQ13224 1484 aa13.16□□□□□ -0.3
RPA1-205ENST00000573924 SNAPC4Q5SXM2 1469 aa13.16□□□□□ -0.3
RPA1-205ENST00000573924 RAD54L2Q9Y4B4 1467 aa13.15□□□□□ -0.3
RPA1-205ENST00000573924 SYNJ2O15056 1496 aa13.13□□□□□ -0.31
RPA1-205ENST00000573924 FGD5Q6ZNL6 1462 aa13.12□□□□□ -0.31
RPA1-205ENST00000573924 CLASP1Q7Z460 1538 aa13.12□□□□□ -0.31
RPA1-205ENST00000573924 NPM3O75607 178 aaKnown RBP13.08□□□□□ -0.32
RPA1-205ENST00000573924 GAPVD1Q14C86 1478 aa13.05□□□□□ -0.32
RPA1-205ENST00000573924 CUX1P39880 1505 aa13.04□□□□□ -0.32
RPA1-205ENST00000573924 PBRM1Q86U86 1689 aa13.01□□□□□ -0.33
RPA1-205ENST00000573924 SCAF1Q9H7N4 1312 aaKnown RBP13□□□□□ -0.33
RPA1-205ENST00000573924 ABCA10Q8WWZ4 1543 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms