RNA–Protein interactions for RNA: ENST00000573903.1

CCDC40-210, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 561 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-210ENST00000573903 NISCHQ9Y2I1 1504 aa30.47■■■□□ 2.47
CCDC40-210ENST00000573903 CCDC180Q9P1Z9 1646 aa27.42■■□□□ 1.98
CCDC40-210ENST00000573903 ABCC9O60706 1549 aa27.36■■□□□ 1.97
CCDC40-210ENST00000573903 RB1CC1Q8TDY2 1594 aa26.1■■□□□ 1.77
CCDC40-210ENST00000573903 NACADO15069 1562 aa25.9■■□□□ 1.74
CCDC40-210ENST00000573903 DCAF8L2P0C7V8 631 aa25.73■■□□□ 1.71
CCDC40-210ENST00000573903 DNAJC5BQ9UF47 199 aa25.55■■□□□ 1.68
CCDC40-210ENST00000573903 MYO15BQ96JP2 1530 aa25.52■■□□□ 1.68
CCDC40-210ENST00000573903 UNC13AQ9UPW8 1703 aa25.49■■□□□ 1.67
CCDC40-210ENST00000573903 PABPN1Q86U42 306 aaKnown RBP eCLIP25.43■■□□□ 1.66
CCDC40-210ENST00000573903 ZCCHC6Q5VYS8 1495 aaKnown RBP25.27■■□□□ 1.64
CCDC40-210ENST00000573903 BICRAQ9NZM4 1560 aa25.25■■□□□ 1.63
CCDC40-210ENST00000573903 DCAF1Q9Y4B6 1507 aa25.19■■□□□ 1.62
CCDC40-210ENST00000573903 SHROOM4Q9ULL8 1493 aa25.01■■□□□ 1.59
CCDC40-210ENST00000573903 SCRIBQ14160 1630 aa24.96■■□□□ 1.59
CCDC40-210ENST00000573903 CC2D2AQ9P2K1 1620 aa24.73■■□□□ 1.55
CCDC40-210ENST00000573903 EIF4G1Q04637 1599 aaKnown RBP24.68■■□□□ 1.54
CCDC40-210ENST00000573903 CECR2Q9BXF3 1484 aa24.66■■□□□ 1.54
CCDC40-210ENST00000573903 NCAPD3P42695 1498 aa23.86■■□□□ 1.41
CCDC40-210ENST00000573903 SMARCA4P51532 1647 aa23.81■■□□□ 1.4
CCDC40-210ENST00000573903 ATAD2BQ9ULI0 1458 aa23.79■■□□□ 1.4
CCDC40-210ENST00000573903 SMARCA2P51531 1590 aa23.78■■□□□ 1.4
CCDC40-210ENST00000573903 HMGXB3Q12766 1538 aa23.74■■□□□ 1.39
CCDC40-210ENST00000573903 BAZ1AQ9NRL2 1556 aaPredicted RBP23.7■■□□□ 1.38
CCDC40-210ENST00000573903 ERCC6Q03468 1493 aa23.68■■□□□ 1.38
CCDC40-210ENST00000573903 CUX2O14529 1486 aa23.62■■□□□ 1.37
CCDC40-210ENST00000573903 BAZ1BQ9UIG0 1483 aaKnown RBP23.61■■□□□ 1.37
CCDC40-210ENST00000573903 PEG3Q9GZU2 1588 aa23.56■■□□□ 1.36
CCDC40-210ENST00000573903 DNAJC5Q9H3Z4 198 aa23.53■■□□□ 1.36
CCDC40-210ENST00000573903 NESP48681 1621 aa23.47■■□□□ 1.35
CCDC40-210ENST00000573903 MROH2BQ7Z745 1585 aa23.46■■□□□ 1.35
CCDC40-210ENST00000573903 LAMC3Q9Y6N6 1575 aa23.39■■□□□ 1.33
CCDC40-210ENST00000573903 THOC2Q8NI27 1593 aaKnown RBP23.29■■□□□ 1.32
CCDC40-210ENST00000573903 KIF21AQ7Z4S6 1674 aa23.24■■□□□ 1.31
CCDC40-210ENST00000573903 PDS5BQ9NTI5 1447 aa23.24■■□□□ 1.31
CCDC40-210ENST00000573903 WIZO95785 1651 aa23.21■■□□□ 1.31
CCDC40-210ENST00000573903 CADPSQ9ULU8 1353 aa23.14■■□□□ 1.29
CCDC40-210ENST00000573903 MRC2Q9UBG0 1479 aa23.04■■□□□ 1.28
CCDC40-210ENST00000573903 CEP164Q9UPV0 1460 aa22.97■■□□□ 1.27
CCDC40-210ENST00000573903 WDR62O43379 1518 aa22.97■■□□□ 1.27
CCDC40-210ENST00000573903 RSF1Q96T23 1441 aaPredicted RBP22.96■■□□□ 1.27
CCDC40-210ENST00000573903 TOP2AP11388 1531 aaKnown RBP22.94■■□□□ 1.26
CCDC40-210ENST00000573903 FANCD2Q9BXW9 1451 aa22.91■■□□□ 1.26
CCDC40-210ENST00000573903 CFTRP13569 1480 aa22.87■■□□□ 1.25
CCDC40-210ENST00000573903 PRDM2Q13029 1718 aa22.75■■□□□ 1.23
CCDC40-210ENST00000573903 URB2Q14146 1524 aaKnown RBP22.68■■□□□ 1.22
CCDC40-210ENST00000573903 CCDC88BA6NC98 1476 aa22.63■■□□□ 1.21
CCDC40-210ENST00000573903 TRIM41Q8WV44 630 aa22.56■■□□□ 1.2
CCDC40-210ENST00000573903 OSCARQ8IYS5 282 aa22.51■■□□□ 1.19
CCDC40-210ENST00000573903 IFT140Q96RY7 1462 aa22.49■■□□□ 1.19
CCDC40-210ENST00000573903 ABCC8Q09428 1581 aa22.46■■□□□ 1.19
CCDC40-210ENST00000573903 TOPBP1Q92547 1522 aa22.46■■□□□ 1.19
CCDC40-210ENST00000573903 DNMBPQ6XZF7 1577 aa22.41■■□□□ 1.18
CCDC40-210ENST00000573903 ZNF608Q9ULD9 1512 aaPredicted RBP22.39■■□□□ 1.17
CCDC40-210ENST00000573903 EIF4G3O43432 1585 aaKnown RBP22.34■■□□□ 1.17
CCDC40-210ENST00000573903 TARBP1Q13395 1621 aaKnown RBP22.26■■□□□ 1.15
CCDC40-210ENST00000573903 RIMBP3CA6NJZ7 1639 aa22.24■■□□□ 1.15
CCDC40-210ENST00000573903 RIMBP3BA6NNM3 1639 aa22.24■■□□□ 1.15
CCDC40-210ENST00000573903 RIMBP3Q9UFD9 1639 aa22.24■■□□□ 1.15
CCDC40-210ENST00000573903 POLA1P09884 1462 aaPredicted RBP22.22■■□□□ 1.15
CCDC40-210ENST00000573903 AQRO60306 1485 aaKnown RBP eCLIP22.19■■□□□ 1.14
CCDC40-210ENST00000573903 CHD1O14646 1710 aa22.18■■□□□ 1.14
CCDC40-210ENST00000573903 ARHGEF11O15085 1522 aa22.16■■□□□ 1.14
CCDC40-210ENST00000573903 SOGA1O94964 1423 aa22.13■■□□□ 1.13
CCDC40-210ENST00000573903 RAD54L2Q9Y4B4 1467 aa22.12■■□□□ 1.13
CCDC40-210ENST00000573903 FGD5Q6ZNL6 1462 aa22.1■■□□□ 1.13
CCDC40-210ENST00000573903 WDR97A6NE52 1622 aa22.1■■□□□ 1.13
CCDC40-210ENST00000573903 FBLN2P98095 1184 aa22.1■■□□□ 1.13
CCDC40-210ENST00000573903 TDRD9Q8NDG6 1382 aaKnown RBP22.06■■□□□ 1.12
CCDC40-210ENST00000573903 CUX1P39880 1505 aa22.05■■□□□ 1.12
CCDC40-210ENST00000573903 SNAPC4Q5SXM2 1469 aa22.02■■□□□ 1.12
CCDC40-210ENST00000573903 MAGI1Q96QZ7 1491 aaPredicted RBP21.97■■□□□ 1.11
CCDC40-210ENST00000573903 SUPT5HO00267 1087 aaKnown RBP21.97■■□□□ 1.11
CCDC40-210ENST00000573903 CYB5RLQ6IPT4 315 aa21.97■■□□□ 1.11
CCDC40-210ENST00000573903 GRIN2BQ13224 1484 aa21.96■■□□□ 1.11
CCDC40-210ENST00000573903 CHMP7Q8WUX9 453 aaPredicted RBP21.94■■□□□ 1.1
CCDC40-210ENST00000573903 SYNJ1O43426 1573 aa21.94■■□□□ 1.1
CCDC40-210ENST00000573903 ARAP1Q96P48 1450 aa21.92■■□□□ 1.1
CCDC40-210ENST00000573903 PBRM1Q86U86 1689 aa21.91■■□□□ 1.1
CCDC40-210ENST00000573903 CLASP1Q7Z460 1538 aa21.89■■□□□ 1.09
CCDC40-210ENST00000573903 SYNJ2O15056 1496 aa21.89■■□□□ 1.09
CCDC40-210ENST00000573903 GAPVD1Q14C86 1478 aa21.87■■□□□ 1.09
CCDC40-210ENST00000573903 ABCA10Q8WWZ4 1543 aa21.85■■□□□ 1.09
CCDC40-210ENST00000573903 ABCA5Q8WWZ7 1642 aa21.83■■□□□ 1.08
CCDC40-210ENST00000573903 TRHP20396 242 aaPredicted RBP21.78■■□□□ 1.08
CCDC40-210ENST00000573903 WRNQ14191 1432 aaPredicted RBP eCLIP21.77■■□□□ 1.08
CCDC40-210ENST00000573903 BIVM-ERCC5R4GMW8 1640 aa21.75■■□□□ 1.07
CCDC40-210ENST00000573903 TOP2BQ02880 1626 aa21.73■■□□□ 1.07
CCDC40-210ENST00000573903 ADAMTS12P58397 1594 aa21.68■■□□□ 1.06
CCDC40-210ENST00000573903 GRIN2AQ12879 1464 aa21.67■■□□□ 1.06
CCDC40-210ENST00000573903 FHAD1B1AJZ9 1412 aa21.6■■□□□ 1.05
CCDC40-210ENST00000573903 ERICH3Q5RHP9 1530 aa21.6■■□□□ 1.05
CCDC40-210ENST00000573903 CEP170Q5SW79 1584 aa21.58■■□□□ 1.05
CCDC40-210ENST00000573903 NUP160Q12769 1436 aa21.57■■□□□ 1.04
CCDC40-210ENST00000573903 ERCC6L2Q5T890 1561 aa21.51■■□□□ 1.03
CCDC40-210ENST00000573903 SHROOM2Q13796 1616 aa21.5■■□□□ 1.03
CCDC40-210ENST00000573903 PRG4Q92954 1404 aaPredicted RBP21.38■■□□□ 1.01
CCDC40-210ENST00000573903 RUSC2Q8N2Y8 1516 aa21.37■■□□□ 1.01
CCDC40-210ENST00000573903 JPH4Q96JJ6 628 aa21.34■■□□□ 1.01
CCDC40-210ENST00000573903 KIF27Q86VH2 1401 aa21.32■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms