RNA–Protein interactions for RNA: ENST00000573867.1

SCARF1-207, Transcript of scavenger receptor class F member 1, humanhuman

TSL 2

Gene SCARF1, Length 939 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARF1-207ENST00000573867 NISCHQ9Y2I1 1504 aa67.98■■■■■ 8.47
SCARF1-207ENST00000573867 CCDC180Q9P1Z9 1646 aa60.45■■■■■ 7.27
SCARF1-207ENST00000573867 ABCC9O60706 1549 aa59.4■■■■■ 7.1
SCARF1-207ENST00000573867 RB1CC1Q8TDY2 1594 aa56.97■■■■■ 6.71
SCARF1-207ENST00000573867 NACADO15069 1562 aa56.87■■■■■ 6.69
SCARF1-207ENST00000573867 DCAF8L2P0C7V8 631 aa56.79■■■■■ 6.68
SCARF1-207ENST00000573867 ZCCHC6Q5VYS8 1495 aaKnown RBP56.61■■■■■ 6.65
SCARF1-207ENST00000573867 MYO15BQ96JP2 1530 aa56.48■■■■■ 6.63
SCARF1-207ENST00000573867 DCAF1Q9Y4B6 1507 aa56.19■■■■■ 6.59
SCARF1-207ENST00000573867 UNC13AQ9UPW8 1703 aa55.76■■■■■ 6.52
SCARF1-207ENST00000573867 PABPN1Q86U42 306 aaKnown RBP eCLIP55.49■■■■■ 6.47
SCARF1-207ENST00000573867 BICRAQ9NZM4 1560 aa55.4■■■■■ 6.46
SCARF1-207ENST00000573867 SCRIBQ14160 1630 aa55.22■■■■■ 6.43
SCARF1-207ENST00000573867 DNAJC5BQ9UF47 199 aa54.77■■■■■ 6.36
SCARF1-207ENST00000573867 SHROOM4Q9ULL8 1493 aa54.63■■■■■ 6.34
SCARF1-207ENST00000573867 EIF4G1Q04637 1599 aaKnown RBP53.88■■■■■ 6.22
SCARF1-207ENST00000573867 CC2D2AQ9P2K1 1620 aa53.71■■■■■ 6.19
SCARF1-207ENST00000573867 CECR2Q9BXF3 1484 aa53.35■■■■■ 6.13
SCARF1-207ENST00000573867 SMARCA4P51532 1647 aa52.79■■■■■ 6.04
SCARF1-207ENST00000573867 BAZ1AQ9NRL2 1556 aaPredicted RBP52.64■■■■■ 6.02
SCARF1-207ENST00000573867 ATAD2BQ9ULI0 1458 aa52.56■■■■■ 6
SCARF1-207ENST00000573867 NCAPD3P42695 1498 aa52.52■■■■■ 6
SCARF1-207ENST00000573867 MROH2BQ7Z745 1585 aa52.44■■■■■ 5.99
SCARF1-207ENST00000573867 SMARCA2P51531 1590 aa52.4■■■■■ 5.98
SCARF1-207ENST00000573867 PEG3Q9GZU2 1588 aa52.25■■■■■ 5.96
SCARF1-207ENST00000573867 HMGXB3Q12766 1538 aa52.24■■■■■ 5.95
SCARF1-207ENST00000573867 BAZ1BQ9UIG0 1483 aaKnown RBP52.06■■■■■ 5.92
SCARF1-207ENST00000573867 WIZO95785 1651 aa51.84■■■■■ 5.89
SCARF1-207ENST00000573867 RSF1Q96T23 1441 aaPredicted RBP51.76■■■■■ 5.88
SCARF1-207ENST00000573867 NESP48681 1621 aa51.4■■■■■ 5.82
SCARF1-207ENST00000573867 TOP2AP11388 1531 aaKnown RBP51.25■■■■■ 5.79
SCARF1-207ENST00000573867 LAMC3Q9Y6N6 1575 aa51.13■■■■■ 5.78
SCARF1-207ENST00000573867 ERCC6Q03468 1493 aa51.12■■■■■ 5.77
SCARF1-207ENST00000573867 CADPSQ9ULU8 1353 aa50.97■■■■■ 5.75
SCARF1-207ENST00000573867 PDS5BQ9NTI5 1447 aa50.76■■■■■ 5.72
SCARF1-207ENST00000573867 KIF21AQ7Z4S6 1674 aa50.73■■■■■ 5.71
SCARF1-207ENST00000573867 CCDC88BA6NC98 1476 aa50.67■■■■■ 5.7
SCARF1-207ENST00000573867 CUX2O14529 1486 aa50.65■■■■■ 5.7
SCARF1-207ENST00000573867 CFTRP13569 1480 aa50.65■■■■■ 5.7
SCARF1-207ENST00000573867 THOC2Q8NI27 1593 aaKnown RBP50.63■■■■■ 5.7
SCARF1-207ENST00000573867 FANCD2Q9BXW9 1451 aa50.4■■■■■ 5.66
SCARF1-207ENST00000573867 CEP164Q9UPV0 1460 aa50.33■■■■■ 5.65
SCARF1-207ENST00000573867 MRC2Q9UBG0 1479 aa50.31■■■■■ 5.64
SCARF1-207ENST00000573867 SUPT5HO00267 1087 aaKnown RBP50.26■■■■■ 5.64
SCARF1-207ENST00000573867 PRDM2Q13029 1718 aa50.19■■■■■ 5.62
SCARF1-207ENST00000573867 WDR62O43379 1518 aa50.17■■■■■ 5.62
SCARF1-207ENST00000573867 URB2Q14146 1524 aaKnown RBP49.97■■■■■ 5.59
SCARF1-207ENST00000573867 TOPBP1Q92547 1522 aa49.6■■■■■ 5.53
SCARF1-207ENST00000573867 DNMBPQ6XZF7 1577 aa49.49■■■■■ 5.51
SCARF1-207ENST00000573867 ABCC8Q09428 1581 aa49.45■■■■■ 5.51
SCARF1-207ENST00000573867 DNAJC5Q9H3Z4 198 aa49.33■■■■■ 5.49
SCARF1-207ENST00000573867 IFT140Q96RY7 1462 aa49.27■■■■■ 5.48
SCARF1-207ENST00000573867 CUX1P39880 1505 aa49.2■■■■■ 5.47
SCARF1-207ENST00000573867 POLA1P09884 1462 aaPredicted RBP49.18■■■■■ 5.46
SCARF1-207ENST00000573867 ZNF608Q9ULD9 1512 aaPredicted RBP49.17■■■■■ 5.46
SCARF1-207ENST00000573867 TARBP1Q13395 1621 aaKnown RBP49.09■■■■■ 5.45
SCARF1-207ENST00000573867 FGD5Q6ZNL6 1462 aa49.02■■■■■ 5.44
SCARF1-207ENST00000573867 RAD54L2Q9Y4B4 1467 aa48.99■■■■■ 5.43
SCARF1-207ENST00000573867 SOGA1O94964 1423 aa48.92■■■■■ 5.42
SCARF1-207ENST00000573867 EIF4G3O43432 1585 aaKnown RBP48.92■■■■■ 5.42
SCARF1-207ENST00000573867 AQRO60306 1485 aaKnown RBP eCLIP48.84■■■■■ 5.41
SCARF1-207ENST00000573867 WRNQ14191 1432 aaPredicted RBP eCLIP48.75■■■■■ 5.39
SCARF1-207ENST00000573867 SYNJ1O43426 1573 aa48.72■■■■■ 5.39
SCARF1-207ENST00000573867 TDRD9Q8NDG6 1382 aaKnown RBP48.71■■■■■ 5.39
SCARF1-207ENST00000573867 BIVM-ERCC5R4GMW8 1640 aa48.68■■■■■ 5.38
SCARF1-207ENST00000573867 TOP2BQ02880 1626 aa48.67■■■■■ 5.38
SCARF1-207ENST00000573867 WDR97A6NE52 1622 aa48.65■■■■■ 5.38
SCARF1-207ENST00000573867 ABCA10Q8WWZ4 1543 aa48.52■■■■■ 5.36
SCARF1-207ENST00000573867 OSCARQ8IYS5 282 aa48.49■■■■■ 5.35
SCARF1-207ENST00000573867 SNAPC4Q5SXM2 1469 aa48.37■■■■■ 5.33
SCARF1-207ENST00000573867 ABCA5Q8WWZ7 1642 aa48.37■■■■■ 5.33
SCARF1-207ENST00000573867 GRIN2BQ13224 1484 aa48.36■■■■■ 5.33
SCARF1-207ENST00000573867 GAPVD1Q14C86 1478 aa48.35■■■■■ 5.33
SCARF1-207ENST00000573867 CHD1O14646 1710 aa48.32■■■■■ 5.33
SCARF1-207ENST00000573867 PBRM1Q86U86 1689 aa48.27■■■■■ 5.32
SCARF1-207ENST00000573867 MAGI1Q96QZ7 1491 aaPredicted RBP48.24■■■■■ 5.31
SCARF1-207ENST00000573867 FBLN2P98095 1184 aa48.2■■■■■ 5.31
SCARF1-207ENST00000573867 SYNJ2O15056 1496 aa48.07■■■■■ 5.29
SCARF1-207ENST00000573867 CHMP7Q8WUX9 453 aaPredicted RBP48.02■■■■■ 5.28
SCARF1-207ENST00000573867 ADAMTS12P58397 1594 aa47.92■■■■■ 5.26
SCARF1-207ENST00000573867 ERICH3Q5RHP9 1530 aa47.91■■■■■ 5.26
SCARF1-207ENST00000573867 CLASP1Q7Z460 1538 aa47.84■■■■■ 5.25
SCARF1-207ENST00000573867 RIMBP3CA6NJZ7 1639 aa47.83■■■■■ 5.25
SCARF1-207ENST00000573867 RIMBP3BA6NNM3 1639 aa47.83■■■■■ 5.25
SCARF1-207ENST00000573867 RIMBP3Q9UFD9 1639 aa47.83■■■■■ 5.25
SCARF1-207ENST00000573867 ARHGEF11O15085 1522 aa47.8■■■■■ 5.24
SCARF1-207ENST00000573867 FHAD1B1AJZ9 1412 aa47.78■■■■■ 5.24
SCARF1-207ENST00000573867 GRIN2AQ12879 1464 aa47.77■■■■■ 5.24
SCARF1-207ENST00000573867 KIF27Q86VH2 1401 aa47.71■■■■■ 5.23
SCARF1-207ENST00000573867 TRIM41Q8WV44 630 aa47.65■■■■■ 5.22
SCARF1-207ENST00000573867 IGF1RP08069 1367 aa47.61■■■■■ 5.21
SCARF1-207ENST00000573867 CEP170Q5SW79 1584 aa47.58■■■■■ 5.21
SCARF1-207ENST00000573867 NUP160Q12769 1436 aa47.58■■■■■ 5.21
SCARF1-207ENST00000573867 ARAP1Q96P48 1450 aa47.45■■■■■ 5.19
SCARF1-207ENST00000573867 CUL7Q14999 1698 aa47.41■■■■■ 5.18
SCARF1-207ENST00000573867 RUSC2Q8N2Y8 1516 aa47.38■■■■■ 5.18
SCARF1-207ENST00000573867 CYB5RLQ6IPT4 315 aa47.33■■■■■ 5.17
SCARF1-207ENST00000573867 CARMIL1Q5VZK9 1371 aa47.28■■■■■ 5.16
SCARF1-207ENST00000573867 SHROOM2Q13796 1616 aa47.23■■■■■ 5.15
SCARF1-207ENST00000573867 ERCC6L2Q5T890 1561 aa47.23■■■■■ 5.15
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms