RNA–Protein interactions for RNA: ENST00000573857.5

TVP23A-208, Transcript of trans-golgi network vesicle protein 23 homolog A, humanhuman

TSL 1 (best)

Gene TVP23A, Length 1,269 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TVP23A-208ENST00000573857 NISCHQ9Y2I1 1504 aa35.74■■■■□ 3.31
TVP23A-208ENST00000573857 CCDC180Q9P1Z9 1646 aa32■■■□□ 2.71
TVP23A-208ENST00000573857 ABCC9O60706 1549 aa31.92■■■□□ 2.7
TVP23A-208ENST00000573857 RB1CC1Q8TDY2 1594 aa30.43■■■□□ 2.46
TVP23A-208ENST00000573857 NACADO15069 1562 aa30.25■■■□□ 2.43
TVP23A-208ENST00000573857 DCAF8L2P0C7V8 631 aa30.09■■■□□ 2.41
TVP23A-208ENST00000573857 MYO15BQ96JP2 1530 aa29.9■■■□□ 2.38
TVP23A-208ENST00000573857 DNAJC5BQ9UF47 199 aa29.86■■■□□ 2.37
TVP23A-208ENST00000573857 PABPN1Q86U42 306 aaKnown RBP eCLIP29.74■■■□□ 2.35
TVP23A-208ENST00000573857 UNC13AQ9UPW8 1703 aa29.68■■■□□ 2.34
TVP23A-208ENST00000573857 ZCCHC6Q5VYS8 1495 aaKnown RBP29.66■■■□□ 2.34
TVP23A-208ENST00000573857 DCAF1Q9Y4B6 1507 aa29.55■■■□□ 2.32
TVP23A-208ENST00000573857 BICRAQ9NZM4 1560 aa29.54■■■□□ 2.32
TVP23A-208ENST00000573857 SHROOM4Q9ULL8 1493 aa29.19■■■□□ 2.26
TVP23A-208ENST00000573857 SCRIBQ14160 1630 aa29.18■■■□□ 2.26
TVP23A-208ENST00000573857 CC2D2AQ9P2K1 1620 aa28.83■■■□□ 2.21
TVP23A-208ENST00000573857 EIF4G1Q04637 1599 aaKnown RBP28.81■■■□□ 2.2
TVP23A-208ENST00000573857 CECR2Q9BXF3 1484 aa28.76■■■□□ 2.19
TVP23A-208ENST00000573857 NCAPD3P42695 1498 aa27.94■■■□□ 2.06
TVP23A-208ENST00000573857 ATAD2BQ9ULI0 1458 aa27.87■■■□□ 2.05
TVP23A-208ENST00000573857 SMARCA4P51532 1647 aa27.85■■■□□ 2.05
TVP23A-208ENST00000573857 SMARCA2P51531 1590 aa27.79■■■□□ 2.04
TVP23A-208ENST00000573857 HMGXB3Q12766 1538 aa27.74■■■□□ 2.03
TVP23A-208ENST00000573857 BAZ1AQ9NRL2 1556 aaPredicted RBP27.73■■■□□ 2.03
TVP23A-208ENST00000573857 BAZ1BQ9UIG0 1483 aaKnown RBP27.6■■■□□ 2.01
TVP23A-208ENST00000573857 PEG3Q9GZU2 1588 aa27.6■■■□□ 2.01
TVP23A-208ENST00000573857 ERCC6Q03468 1493 aa27.57■■■□□ 2
TVP23A-208ENST00000573857 MROH2BQ7Z745 1585 aa27.54■■■□□ 2
TVP23A-208ENST00000573857 CUX2O14529 1486 aa27.49■■□□□ 1.99
TVP23A-208ENST00000573857 NESP48681 1621 aa27.45■■□□□ 1.99
TVP23A-208ENST00000573857 DNAJC5Q9H3Z4 198 aa27.35■■□□□ 1.97
TVP23A-208ENST00000573857 LAMC3Q9Y6N6 1575 aa27.27■■□□□ 1.96
TVP23A-208ENST00000573857 WIZO95785 1651 aa27.18■■□□□ 1.94
TVP23A-208ENST00000573857 THOC2Q8NI27 1593 aaKnown RBP27.15■■□□□ 1.94
TVP23A-208ENST00000573857 PDS5BQ9NTI5 1447 aa27.14■■□□□ 1.93
TVP23A-208ENST00000573857 CADPSQ9ULU8 1353 aa27.09■■□□□ 1.93
TVP23A-208ENST00000573857 KIF21AQ7Z4S6 1674 aa27.07■■□□□ 1.92
TVP23A-208ENST00000573857 RSF1Q96T23 1441 aaPredicted RBP27.03■■□□□ 1.92
TVP23A-208ENST00000573857 MRC2Q9UBG0 1479 aa26.89■■□□□ 1.9
TVP23A-208ENST00000573857 TOP2AP11388 1531 aaKnown RBP26.88■■□□□ 1.89
TVP23A-208ENST00000573857 WDR62O43379 1518 aa26.82■■□□□ 1.88
TVP23A-208ENST00000573857 CFTRP13569 1480 aa26.81■■□□□ 1.88
TVP23A-208ENST00000573857 CEP164Q9UPV0 1460 aa26.81■■□□□ 1.88
TVP23A-208ENST00000573857 FANCD2Q9BXW9 1451 aa26.79■■□□□ 1.88
TVP23A-208ENST00000573857 CCDC88BA6NC98 1476 aa26.58■■□□□ 1.85
TVP23A-208ENST00000573857 URB2Q14146 1524 aaKnown RBP26.56■■□□□ 1.84
TVP23A-208ENST00000573857 PRDM2Q13029 1718 aa26.48■■□□□ 1.83
TVP23A-208ENST00000573857 TOPBP1Q92547 1522 aa26.29■■□□□ 1.8
TVP23A-208ENST00000573857 IFT140Q96RY7 1462 aa26.27■■□□□ 1.8
TVP23A-208ENST00000573857 OSCARQ8IYS5 282 aa26.24■■□□□ 1.79
TVP23A-208ENST00000573857 ABCC8Q09428 1581 aa26.24■■□□□ 1.79
TVP23A-208ENST00000573857 ZNF608Q9ULD9 1512 aaPredicted RBP26.22■■□□□ 1.79
TVP23A-208ENST00000573857 DNMBPQ6XZF7 1577 aa26.2■■□□□ 1.78
TVP23A-208ENST00000573857 TRIM41Q8WV44 630 aa26.17■■□□□ 1.78
TVP23A-208ENST00000573857 EIF4G3O43432 1585 aaKnown RBP26.07■■□□□ 1.76
TVP23A-208ENST00000573857 POLA1P09884 1462 aaPredicted RBP26.04■■□□□ 1.76
TVP23A-208ENST00000573857 TARBP1Q13395 1621 aaKnown RBP26.03■■□□□ 1.76
TVP23A-208ENST00000573857 AQRO60306 1485 aaKnown RBP eCLIP25.98■■□□□ 1.75
TVP23A-208ENST00000573857 RAD54L2Q9Y4B4 1467 aa25.92■■□□□ 1.74
TVP23A-208ENST00000573857 SOGA1O94964 1423 aa25.9■■□□□ 1.74
TVP23A-208ENST00000573857 FGD5Q6ZNL6 1462 aa25.88■■□□□ 1.73
TVP23A-208ENST00000573857 SUPT5HO00267 1087 aaKnown RBP25.88■■□□□ 1.73
TVP23A-208ENST00000573857 CUX1P39880 1505 aa25.88■■□□□ 1.73
TVP23A-208ENST00000573857 RIMBP3CA6NJZ7 1639 aa25.87■■□□□ 1.73
TVP23A-208ENST00000573857 RIMBP3BA6NNM3 1639 aa25.87■■□□□ 1.73
TVP23A-208ENST00000573857 RIMBP3Q9UFD9 1639 aa25.87■■□□□ 1.73
TVP23A-208ENST00000573857 TDRD9Q8NDG6 1382 aaKnown RBP25.85■■□□□ 1.73
TVP23A-208ENST00000573857 ARHGEF11O15085 1522 aa25.82■■□□□ 1.72
TVP23A-208ENST00000573857 CHD1O14646 1710 aa25.81■■□□□ 1.72
TVP23A-208ENST00000573857 WDR97A6NE52 1622 aa25.79■■□□□ 1.72
TVP23A-208ENST00000573857 FBLN2P98095 1184 aa25.78■■□□□ 1.72
TVP23A-208ENST00000573857 SNAPC4Q5SXM2 1469 aa25.73■■□□□ 1.71
TVP23A-208ENST00000573857 GRIN2BQ13224 1484 aa25.68■■□□□ 1.7
TVP23A-208ENST00000573857 MAGI1Q96QZ7 1491 aaPredicted RBP25.67■■□□□ 1.7
TVP23A-208ENST00000573857 CHMP7Q8WUX9 453 aaPredicted RBP25.62■■□□□ 1.69
TVP23A-208ENST00000573857 CYB5RLQ6IPT4 315 aa25.61■■□□□ 1.69
TVP23A-208ENST00000573857 ABCA10Q8WWZ4 1543 aa25.6■■□□□ 1.69
TVP23A-208ENST00000573857 GAPVD1Q14C86 1478 aa25.6■■□□□ 1.69
TVP23A-208ENST00000573857 SYNJ2O15056 1496 aa25.59■■□□□ 1.69
TVP23A-208ENST00000573857 ARAP1Q96P48 1450 aa25.59■■□□□ 1.69
TVP23A-208ENST00000573857 CLASP1Q7Z460 1538 aa25.57■■□□□ 1.68
TVP23A-208ENST00000573857 SYNJ1O43426 1573 aa25.55■■□□□ 1.68
TVP23A-208ENST00000573857 ABCA5Q8WWZ7 1642 aa25.54■■□□□ 1.68
TVP23A-208ENST00000573857 PBRM1Q86U86 1689 aa25.53■■□□□ 1.68
TVP23A-208ENST00000573857 WRNQ14191 1432 aaPredicted RBP eCLIP25.52■■□□□ 1.68
TVP23A-208ENST00000573857 TOP2BQ02880 1626 aa25.48■■□□□ 1.67
TVP23A-208ENST00000573857 BIVM-ERCC5R4GMW8 1640 aa25.47■■□□□ 1.67
TVP23A-208ENST00000573857 GRIN2AQ12879 1464 aa25.34■■□□□ 1.65
TVP23A-208ENST00000573857 ADAMTS12P58397 1594 aa25.34■■□□□ 1.65
TVP23A-208ENST00000573857 FHAD1B1AJZ9 1412 aa25.29■■□□□ 1.64
TVP23A-208ENST00000573857 ERICH3Q5RHP9 1530 aa25.28■■□□□ 1.64
TVP23A-208ENST00000573857 TRHP20396 242 aaPredicted RBP25.28■■□□□ 1.64
TVP23A-208ENST00000573857 NUP160Q12769 1436 aa25.27■■□□□ 1.64
TVP23A-208ENST00000573857 CEP170Q5SW79 1584 aa25.24■■□□□ 1.63
TVP23A-208ENST00000573857 ERCC6L2Q5T890 1561 aa25.17■■□□□ 1.62
TVP23A-208ENST00000573857 SHROOM2Q13796 1616 aa25.12■■□□□ 1.61
TVP23A-208ENST00000573857 PRG4Q92954 1404 aaPredicted RBP25.01■■□□□ 1.59
TVP23A-208ENST00000573857 JPH4Q96JJ6 628 aa25■■□□□ 1.59
TVP23A-208ENST00000573857 KIF27Q86VH2 1401 aa25■■□□□ 1.59
TVP23A-208ENST00000573857 IGF1RP08069 1367 aa24.99■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 74 ms