RNA–Protein interactions for RNA: ENST00000573827.1

SMG6-214, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 3

Gene SMG6, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-214ENST00000573827 NISCHQ9Y2I1 1504 aa43.43■■■■■ 4.54
SMG6-214ENST00000573827 CCDC180Q9P1Z9 1646 aa38.75■■■■□ 3.79
SMG6-214ENST00000573827 ABCC9O60706 1549 aa38.35■■■■□ 3.73
SMG6-214ENST00000573827 RB1CC1Q8TDY2 1594 aa36.66■■■■□ 3.46
SMG6-214ENST00000573827 NACADO15069 1562 aa36.55■■■■□ 3.44
SMG6-214ENST00000573827 DCAF8L2P0C7V8 631 aa36.27■■■■□ 3.4
SMG6-214ENST00000573827 MYO15BQ96JP2 1530 aa36.26■■■■□ 3.4
SMG6-214ENST00000573827 ZCCHC6Q5VYS8 1495 aaKnown RBP36.1■■■■□ 3.37
SMG6-214ENST00000573827 DCAF1Q9Y4B6 1507 aa35.93■■■■□ 3.34
SMG6-214ENST00000573827 UNC13AQ9UPW8 1703 aa35.87■■■■□ 3.33
SMG6-214ENST00000573827 PABPN1Q86U42 306 aaKnown RBP eCLIP35.77■■■■□ 3.32
SMG6-214ENST00000573827 DNAJC5BQ9UF47 199 aa35.74■■■■□ 3.31
SMG6-214ENST00000573827 BICRAQ9NZM4 1560 aa35.71■■■■□ 3.31
SMG6-214ENST00000573827 SCRIBQ14160 1630 aa35.3■■■■□ 3.24
SMG6-214ENST00000573827 SHROOM4Q9ULL8 1493 aa35.22■■■■□ 3.23
SMG6-214ENST00000573827 EIF4G1Q04637 1599 aaKnown RBP34.73■■■■□ 3.15
SMG6-214ENST00000573827 CC2D2AQ9P2K1 1620 aa34.68■■■■□ 3.14
SMG6-214ENST00000573827 CECR2Q9BXF3 1484 aa34.52■■■■□ 3.12
SMG6-214ENST00000573827 NCAPD3P42695 1498 aa33.8■■■■□ 3
SMG6-214ENST00000573827 SMARCA4P51532 1647 aa33.77■■■■□ 3
SMG6-214ENST00000573827 ATAD2BQ9ULI0 1458 aa33.74■■■□□ 2.99
SMG6-214ENST00000573827 BAZ1AQ9NRL2 1556 aaPredicted RBP33.64■■■□□ 2.98
SMG6-214ENST00000573827 SMARCA2P51531 1590 aa33.6■■■□□ 2.97
SMG6-214ENST00000573827 HMGXB3Q12766 1538 aa33.55■■■□□ 2.96
SMG6-214ENST00000573827 PEG3Q9GZU2 1588 aa33.51■■■□□ 2.95
SMG6-214ENST00000573827 MROH2BQ7Z745 1585 aa33.47■■■□□ 2.95
SMG6-214ENST00000573827 BAZ1BQ9UIG0 1483 aaKnown RBP33.35■■■□□ 2.93
SMG6-214ENST00000573827 NESP48681 1621 aa33.1■■■□□ 2.89
SMG6-214ENST00000573827 WIZO95785 1651 aa33.04■■■□□ 2.88
SMG6-214ENST00000573827 ERCC6Q03468 1493 aa33■■■□□ 2.87
SMG6-214ENST00000573827 RSF1Q96T23 1441 aaPredicted RBP32.94■■■□□ 2.86
SMG6-214ENST00000573827 CUX2O14529 1486 aa32.9■■■□□ 2.86
SMG6-214ENST00000573827 LAMC3Q9Y6N6 1575 aa32.89■■■□□ 2.86
SMG6-214ENST00000573827 CADPSQ9ULU8 1353 aa32.75■■■□□ 2.83
SMG6-214ENST00000573827 THOC2Q8NI27 1593 aaKnown RBP32.7■■■□□ 2.82
SMG6-214ENST00000573827 TOP2AP11388 1531 aaKnown RBP32.67■■■□□ 2.82
SMG6-214ENST00000573827 PDS5BQ9NTI5 1447 aa32.67■■■□□ 2.82
SMG6-214ENST00000573827 KIF21AQ7Z4S6 1674 aa32.63■■■□□ 2.81
SMG6-214ENST00000573827 CFTRP13569 1480 aa32.48■■■□□ 2.79
SMG6-214ENST00000573827 DNAJC5Q9H3Z4 198 aa32.46■■■□□ 2.79
SMG6-214ENST00000573827 MRC2Q9UBG0 1479 aa32.4■■■□□ 2.78
SMG6-214ENST00000573827 WDR62O43379 1518 aa32.35■■■□□ 2.77
SMG6-214ENST00000573827 FANCD2Q9BXW9 1451 aa32.35■■■□□ 2.77
SMG6-214ENST00000573827 CCDC88BA6NC98 1476 aa32.31■■■□□ 2.76
SMG6-214ENST00000573827 CEP164Q9UPV0 1460 aa32.31■■■□□ 2.76
SMG6-214ENST00000573827 URB2Q14146 1524 aaKnown RBP32.11■■■□□ 2.73
SMG6-214ENST00000573827 PRDM2Q13029 1718 aa32.09■■■□□ 2.73
SMG6-214ENST00000573827 TOPBP1Q92547 1522 aa31.8■■■□□ 2.68
SMG6-214ENST00000573827 ABCC8Q09428 1581 aa31.7■■■□□ 2.67
SMG6-214ENST00000573827 DNMBPQ6XZF7 1577 aa31.7■■■□□ 2.67
SMG6-214ENST00000573827 IFT140Q96RY7 1462 aa31.69■■■□□ 2.66
SMG6-214ENST00000573827 ZNF608Q9ULD9 1512 aaPredicted RBP31.65■■■□□ 2.66
SMG6-214ENST00000573827 SUPT5HO00267 1087 aaKnown RBP31.61■■■□□ 2.65
SMG6-214ENST00000573827 TARBP1Q13395 1621 aaKnown RBP31.52■■■□□ 2.64
SMG6-214ENST00000573827 POLA1P09884 1462 aaPredicted RBP31.52■■■□□ 2.64
SMG6-214ENST00000573827 EIF4G3O43432 1585 aaKnown RBP31.43■■■□□ 2.62
SMG6-214ENST00000573827 CUX1P39880 1505 aa31.43■■■□□ 2.62
SMG6-214ENST00000573827 OSCARQ8IYS5 282 aa31.41■■■□□ 2.62
SMG6-214ENST00000573827 AQRO60306 1485 aaKnown RBP eCLIP31.38■■■□□ 2.61
SMG6-214ENST00000573827 RAD54L2Q9Y4B4 1467 aa31.38■■■□□ 2.61
SMG6-214ENST00000573827 FGD5Q6ZNL6 1462 aa31.35■■■□□ 2.61
SMG6-214ENST00000573827 SOGA1O94964 1423 aa31.32■■■□□ 2.61
SMG6-214ENST00000573827 TDRD9Q8NDG6 1382 aaKnown RBP31.23■■■□□ 2.59
SMG6-214ENST00000573827 WDR97A6NE52 1622 aa31.18■■■□□ 2.58
SMG6-214ENST00000573827 CHD1O14646 1710 aa31.1■■■□□ 2.57
SMG6-214ENST00000573827 TRIM41Q8WV44 630 aa31.06■■■□□ 2.56
SMG6-214ENST00000573827 ABCA10Q8WWZ4 1543 aa31.05■■■□□ 2.56
SMG6-214ENST00000573827 SNAPC4Q5SXM2 1469 aa31.05■■■□□ 2.56
SMG6-214ENST00000573827 GRIN2BQ13224 1484 aa31.01■■■□□ 2.56
SMG6-214ENST00000573827 WRNQ14191 1432 aaPredicted RBP eCLIP31■■■□□ 2.551e-6■■■■■ 58.5
SMG6-214ENST00000573827 RIMBP3CA6NJZ7 1639 aa31■■■□□ 2.55
SMG6-214ENST00000573827 RIMBP3BA6NNM3 1639 aa31■■■□□ 2.55
SMG6-214ENST00000573827 TOP2BQ02880 1626 aa31■■■□□ 2.55
SMG6-214ENST00000573827 RIMBP3Q9UFD9 1639 aa31■■■□□ 2.55
SMG6-214ENST00000573827 SYNJ1O43426 1573 aa31■■■□□ 2.55
SMG6-214ENST00000573827 BIVM-ERCC5R4GMW8 1640 aa30.99■■■□□ 2.55
SMG6-214ENST00000573827 MAGI1Q96QZ7 1491 aaPredicted RBP30.99■■■□□ 2.55
SMG6-214ENST00000573827 ARHGEF11O15085 1522 aa30.97■■■□□ 2.55
SMG6-214ENST00000573827 GAPVD1Q14C86 1478 aa30.96■■■□□ 2.55
SMG6-214ENST00000573827 ABCA5Q8WWZ7 1642 aa30.96■■■□□ 2.55
SMG6-214ENST00000573827 FBLN2P98095 1184 aa30.94■■■□□ 2.54
SMG6-214ENST00000573827 SYNJ2O15056 1496 aa30.89■■■□□ 2.53
SMG6-214ENST00000573827 PBRM1Q86U86 1689 aa30.88■■■□□ 2.53
SMG6-214ENST00000573827 CLASP1Q7Z460 1538 aa30.84■■■□□ 2.53
SMG6-214ENST00000573827 CHMP7Q8WUX9 453 aaPredicted RBP30.82■■■□□ 2.52
SMG6-214ENST00000573827 ARAP1Q96P48 1450 aa30.72■■■□□ 2.51
SMG6-214ENST00000573827 ADAMTS12P58397 1594 aa30.69■■■□□ 2.5
SMG6-214ENST00000573827 GRIN2AQ12879 1464 aa30.64■■■□□ 2.5
SMG6-214ENST00000573827 CYB5RLQ6IPT4 315 aa30.64■■■□□ 2.5
SMG6-214ENST00000573827 ERICH3Q5RHP9 1530 aa30.63■■■□□ 2.49
SMG6-214ENST00000573827 FHAD1B1AJZ9 1412 aa30.6■■■□□ 2.49
SMG6-214ENST00000573827 NUP160Q12769 1436 aa30.57■■■□□ 2.48
SMG6-214ENST00000573827 CEP170Q5SW79 1584 aa30.53■■■□□ 2.48
SMG6-214ENST00000573827 ERCC6L2Q5T890 1561 aa30.4■■■□□ 2.46
SMG6-214ENST00000573827 IGF1RP08069 1367 aa30.39■■■□□ 2.45
SMG6-214ENST00000573827 SHROOM2Q13796 1616 aa30.38■■■□□ 2.45
SMG6-214ENST00000573827 KIF27Q86VH2 1401 aa30.36■■■□□ 2.45
SMG6-214ENST00000573827 RUSC2Q8N2Y8 1516 aa30.24■■■□□ 2.43
SMG6-214ENST00000573827 CUL7Q14999 1698 aa30.22■■■□□ 2.43
SMG6-214ENST00000573827 JPH4Q96JJ6 628 aa30.18■■■□□ 2.42
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms