RNA–Protein interactions for RNA: ENST00000572967.1

NDE1-206, Transcript of nudE neurodevelopment protein 1, humanhuman

TSL 3

Gene NDE1, Length 484 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NDE1-206ENST00000572967 NISCHQ9Y2I1 1504 aa29.23■■■□□ 2.27
NDE1-206ENST00000572967 CCDC180Q9P1Z9 1646 aa26.27■■□□□ 1.8
NDE1-206ENST00000572967 ABCC9O60706 1549 aa25.98■■□□□ 1.75
NDE1-206ENST00000572967 RB1CC1Q8TDY2 1594 aa24.83■■□□□ 1.57
NDE1-206ENST00000572967 NACADO15069 1562 aa24.67■■□□□ 1.54
NDE1-206ENST00000572967 DCAF8L2P0C7V8 631 aa24.46■■□□□ 1.51
NDE1-206ENST00000572967 UNC13AQ9UPW8 1703 aa24.42■■□□□ 1.5
NDE1-206ENST00000572967 MYO15BQ96JP2 1530 aa24.35■■□□□ 1.49
NDE1-206ENST00000572967 ZCCHC6Q5VYS8 1495 aaKnown RBP24.33■■□□□ 1.49
NDE1-206ENST00000572967 DCAF1Q9Y4B6 1507 aa24.13■■□□□ 1.45
NDE1-206ENST00000572967 BICRAQ9NZM4 1560 aa24.12■■□□□ 1.45
NDE1-206ENST00000572967 PABPN1Q86U42 306 aaKnown RBP eCLIP24.11■■□□□ 1.45
NDE1-206ENST00000572967 DNAJC5BQ9UF47 199 aa24.02■■□□□ 1.44
NDE1-206ENST00000572967 SCRIBQ14160 1630 aa23.98■■□□□ 1.43
NDE1-206ENST00000572967 SHROOM4Q9ULL8 1493 aa23.75■■□□□ 1.39
NDE1-206ENST00000572967 CC2D2AQ9P2K1 1620 aa23.51■■□□□ 1.35
NDE1-206ENST00000572967 EIF4G1Q04637 1599 aaKnown RBP23.51■■□□□ 1.35
NDE1-206ENST00000572967 CECR2Q9BXF3 1484 aa23.35■■□□□ 1.33
NDE1-206ENST00000572967 SMARCA4P51532 1647 aa22.85■■□□□ 1.25
NDE1-206ENST00000572967 ATAD2BQ9ULI0 1458 aa22.71■■□□□ 1.23
NDE1-206ENST00000572967 SMARCA2P51531 1590 aa22.71■■□□□ 1.23
NDE1-206ENST00000572967 BAZ1AQ9NRL2 1556 aaPredicted RBP22.71■■□□□ 1.23
NDE1-206ENST00000572967 NCAPD3P42695 1498 aa22.69■■□□□ 1.22
NDE1-206ENST00000572967 HMGXB3Q12766 1538 aa22.67■■□□□ 1.22
NDE1-206ENST00000572967 MROH2BQ7Z745 1585 aa22.56■■□□□ 1.2
NDE1-206ENST00000572967 PEG3Q9GZU2 1588 aa22.56■■□□□ 1.2
NDE1-206ENST00000572967 BAZ1BQ9UIG0 1483 aaKnown RBP22.55■■□□□ 1.2
NDE1-206ENST00000572967 ERCC6Q03468 1493 aa22.42■■□□□ 1.18
NDE1-206ENST00000572967 NESP48681 1621 aa22.39■■□□□ 1.17
NDE1-206ENST00000572967 WIZO95785 1651 aa22.36■■□□□ 1.17
NDE1-206ENST00000572967 CUX2O14529 1486 aa22.28■■□□□ 1.16
NDE1-206ENST00000572967 LAMC3Q9Y6N6 1575 aa22.26■■□□□ 1.15
NDE1-206ENST00000572967 KIF21AQ7Z4S6 1674 aa22.23■■□□□ 1.15
NDE1-206ENST00000572967 THOC2Q8NI27 1593 aaKnown RBP22.21■■□□□ 1.15
NDE1-206ENST00000572967 RSF1Q96T23 1441 aaPredicted RBP22.09■■□□□ 1.13
NDE1-206ENST00000572967 TOP2AP11388 1531 aaKnown RBP22.07■■□□□ 1.12
NDE1-206ENST00000572967 PDS5BQ9NTI5 1447 aa22.03■■□□□ 1.12
NDE1-206ENST00000572967 CADPSQ9ULU8 1353 aa22■■□□□ 1.11
NDE1-206ENST00000572967 MRC2Q9UBG0 1479 aa21.91■■□□□ 1.1
NDE1-206ENST00000572967 PRDM2Q13029 1718 aa21.89■■□□□ 1.1
NDE1-206ENST00000572967 WDR62O43379 1518 aa21.89■■□□□ 1.09
NDE1-206ENST00000572967 CEP164Q9UPV0 1460 aa21.89■■□□□ 1.09
NDE1-206ENST00000572967 DNAJC5Q9H3Z4 198 aa21.86■■□□□ 1.09
NDE1-206ENST00000572967 CFTRP13569 1480 aa21.84■■□□□ 1.09
NDE1-206ENST00000572967 FANCD2Q9BXW9 1451 aa21.84■■□□□ 1.09
NDE1-206ENST00000572967 CCDC88BA6NC98 1476 aa21.72■■□□□ 1.07
NDE1-206ENST00000572967 URB2Q14146 1524 aaKnown RBP21.68■■□□□ 1.06
NDE1-206ENST00000572967 TOPBP1Q92547 1522 aa21.47■■□□□ 1.03
NDE1-206ENST00000572967 DNMBPQ6XZF7 1577 aa21.45■■□□□ 1.02
NDE1-206ENST00000572967 IFT140Q96RY7 1462 aa21.39■■□□□ 1.01
NDE1-206ENST00000572967 EIF4G3O43432 1585 aaKnown RBP21.37■■□□□ 1.01
NDE1-206ENST00000572967 ZNF608Q9ULD9 1512 aaPredicted RBP21.37■■□□□ 1.01
NDE1-206ENST00000572967 ABCC8Q09428 1581 aa21.36■■□□□ 1.01
NDE1-206ENST00000572967 TARBP1Q13395 1621 aaKnown RBP21.29■■□□□ 1
NDE1-206ENST00000572967 POLA1P09884 1462 aaPredicted RBP21.26■□□□□ 0.99
NDE1-206ENST00000572967 SUPT5HO00267 1087 aaKnown RBP21.24■□□□□ 0.99
NDE1-206ENST00000572967 CHD1O14646 1710 aa21.21■□□□□ 0.99
NDE1-206ENST00000572967 CUX1P39880 1505 aa21.2■□□□□ 0.98
NDE1-206ENST00000572967 FGD5Q6ZNL6 1462 aa21.19■□□□□ 0.98
NDE1-206ENST00000572967 RAD54L2Q9Y4B4 1467 aa21.17■□□□□ 0.98
NDE1-206ENST00000572967 AQRO60306 1485 aaKnown RBP eCLIP21.15■□□□□ 0.984e-7■□□□□ 10.5
NDE1-206ENST00000572967 WDR97A6NE52 1622 aa21.15■□□□□ 0.98
NDE1-206ENST00000572967 OSCARQ8IYS5 282 aa21.14■□□□□ 0.97
NDE1-206ENST00000572967 TRIM41Q8WV44 630 aa21.11■□□□□ 0.97
NDE1-206ENST00000572967 RIMBP3CA6NJZ7 1639 aa21.09■□□□□ 0.97
NDE1-206ENST00000572967 RIMBP3BA6NNM3 1639 aa21.09■□□□□ 0.97
NDE1-206ENST00000572967 RIMBP3Q9UFD9 1639 aa21.09■□□□□ 0.97
NDE1-206ENST00000572967 SOGA1O94964 1423 aa21.08■□□□□ 0.97
NDE1-206ENST00000572967 PBRM1Q86U86 1689 aa21.05■□□□□ 0.96
NDE1-206ENST00000572967 SNAPC4Q5SXM2 1469 aa21.03■□□□□ 0.96
NDE1-206ENST00000572967 TDRD9Q8NDG6 1382 aaKnown RBP21.02■□□□□ 0.96
NDE1-206ENST00000572967 ARHGEF11O15085 1522 aa20.99■□□□□ 0.95
NDE1-206ENST00000572967 BIVM-ERCC5R4GMW8 1640 aa20.98■□□□□ 0.95
NDE1-206ENST00000572967 ABCA5Q8WWZ7 1642 aa20.96■□□□□ 0.95
NDE1-206ENST00000572967 SYNJ1O43426 1573 aa20.95■□□□□ 0.94
NDE1-206ENST00000572967 MAGI1Q96QZ7 1491 aaPredicted RBP20.94■□□□□ 0.94
NDE1-206ENST00000572967 GRIN2BQ13224 1484 aa20.93■□□□□ 0.94
NDE1-206ENST00000572967 TOP2BQ02880 1626 aa20.93■□□□□ 0.94
NDE1-206ENST00000572967 FBLN2P98095 1184 aa20.92■□□□□ 0.94
NDE1-206ENST00000572967 ABCA10Q8WWZ4 1543 aa20.91■□□□□ 0.94
NDE1-206ENST00000572967 GAPVD1Q14C86 1478 aa20.89■□□□□ 0.94
NDE1-206ENST00000572967 WRNQ14191 1432 aaPredicted RBP eCLIP20.87■□□□□ 0.93
NDE1-206ENST00000572967 CLASP1Q7Z460 1538 aa20.87■□□□□ 0.93
NDE1-206ENST00000572967 SYNJ2O15056 1496 aa20.85■□□□□ 0.93
NDE1-206ENST00000572967 ARAP1Q96P48 1450 aa20.81■□□□□ 0.92
NDE1-206ENST00000572967 ADAMTS12P58397 1594 aa20.8■□□□□ 0.92
NDE1-206ENST00000572967 CHMP7Q8WUX9 453 aaPredicted RBP20.77■□□□□ 0.92
NDE1-206ENST00000572967 GRIN2AQ12879 1464 aa20.7■□□□□ 0.9
NDE1-206ENST00000572967 CEP170Q5SW79 1584 aa20.68■□□□□ 0.9
NDE1-206ENST00000572967 CYB5RLQ6IPT4 315 aa20.67■□□□□ 0.9
NDE1-206ENST00000572967 ERICH3Q5RHP9 1530 aa20.67■□□□□ 0.9
NDE1-206ENST00000572967 FHAD1B1AJZ9 1412 aa20.61■□□□□ 0.89
NDE1-206ENST00000572967 NUP160Q12769 1436 aa20.59■□□□□ 0.89
NDE1-206ENST00000572967 ERCC6L2Q5T890 1561 aa20.58■□□□□ 0.88
NDE1-206ENST00000572967 SHROOM2Q13796 1616 aa20.56■□□□□ 0.88
NDE1-206ENST00000572967 RUSC2Q8N2Y8 1516 aa20.53■□□□□ 0.88
NDE1-206ENST00000572967 CUL7Q14999 1698 aa20.49■□□□□ 0.87
NDE1-206ENST00000572967 KIF27Q86VH2 1401 aa20.44■□□□□ 0.86
NDE1-206ENST00000572967 TRHP20396 242 aaPredicted RBP20.41■□□□□ 0.86
NDE1-206ENST00000572967 PRG4Q92954 1404 aaPredicted RBP20.36■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms