RNA–Protein interactions for RNA: ENST00000572756.5

NDE1-205, Transcript of nudE neurodevelopment protein 1, humanhuman

TSL 5

Gene NDE1, Length 915 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NDE1-205ENST00000572756 NISCHQ9Y2I1 1504 aa39.77■■■■□ 3.96
NDE1-205ENST00000572756 CCDC180Q9P1Z9 1646 aa35.48■■■■□ 3.27
NDE1-205ENST00000572756 ABCC9O60706 1549 aa34.84■■■■□ 3.17
NDE1-205ENST00000572756 RB1CC1Q8TDY2 1594 aa33.46■■■□□ 2.95
NDE1-205ENST00000572756 NACADO15069 1562 aa33.38■■■□□ 2.93
NDE1-205ENST00000572756 DCAF8L2P0C7V8 631 aa33.16■■■□□ 2.9
NDE1-205ENST00000572756 MYO15BQ96JP2 1530 aa33.14■■■□□ 2.9
NDE1-205ENST00000572756 ZCCHC6Q5VYS8 1495 aaKnown RBP33.1■■■□□ 2.89
NDE1-205ENST00000572756 DCAF1Q9Y4B6 1507 aa32.93■■■□□ 2.86
NDE1-205ENST00000572756 UNC13AQ9UPW8 1703 aa32.77■■■□□ 2.84
NDE1-205ENST00000572756 BICRAQ9NZM4 1560 aa32.5■■■□□ 2.79
NDE1-205ENST00000572756 PABPN1Q86U42 306 aaKnown RBP eCLIP32.49■■■□□ 2.79
NDE1-205ENST00000572756 SCRIBQ14160 1630 aa32.31■■■□□ 2.76
NDE1-205ENST00000572756 DNAJC5BQ9UF47 199 aa32.19■■■□□ 2.74
NDE1-205ENST00000572756 SHROOM4Q9ULL8 1493 aa32.12■■■□□ 2.73
NDE1-205ENST00000572756 EIF4G1Q04637 1599 aaKnown RBP31.63■■■□□ 2.65
NDE1-205ENST00000572756 CC2D2AQ9P2K1 1620 aa31.54■■■□□ 2.64
NDE1-205ENST00000572756 CECR2Q9BXF3 1484 aa31.33■■■□□ 2.61
NDE1-205ENST00000572756 SMARCA4P51532 1647 aa30.91■■■□□ 2.54
NDE1-205ENST00000572756 BAZ1AQ9NRL2 1556 aaPredicted RBP30.83■■■□□ 2.53
NDE1-205ENST00000572756 NCAPD3P42695 1498 aa30.8■■■□□ 2.52
NDE1-205ENST00000572756 ATAD2BQ9ULI0 1458 aa30.78■■■□□ 2.52
NDE1-205ENST00000572756 SMARCA2P51531 1590 aa30.73■■■□□ 2.51
NDE1-205ENST00000572756 HMGXB3Q12766 1538 aa30.65■■■□□ 2.5
NDE1-205ENST00000572756 MROH2BQ7Z745 1585 aa30.65■■■□□ 2.5
NDE1-205ENST00000572756 PEG3Q9GZU2 1588 aa30.65■■■□□ 2.5
NDE1-205ENST00000572756 BAZ1BQ9UIG0 1483 aaKnown RBP30.49■■■□□ 2.47
NDE1-205ENST00000572756 WIZO95785 1651 aa30.32■■■□□ 2.44
NDE1-205ENST00000572756 RSF1Q96T23 1441 aaPredicted RBP30.22■■■□□ 2.43
NDE1-205ENST00000572756 NESP48681 1621 aa30.11■■■□□ 2.41
NDE1-205ENST00000572756 LAMC3Q9Y6N6 1575 aa30.03■■■□□ 2.4
NDE1-205ENST00000572756 ERCC6Q03468 1493 aa30.01■■■□□ 2.4
NDE1-205ENST00000572756 TOP2AP11388 1531 aaKnown RBP29.97■■■□□ 2.39
NDE1-205ENST00000572756 CADPSQ9ULU8 1353 aa29.87■■■□□ 2.37
NDE1-205ENST00000572756 CUX2O14529 1486 aa29.83■■■□□ 2.37
NDE1-205ENST00000572756 PDS5BQ9NTI5 1447 aa29.79■■■□□ 2.36
NDE1-205ENST00000572756 KIF21AQ7Z4S6 1674 aa29.79■■■□□ 2.36
NDE1-205ENST00000572756 THOC2Q8NI27 1593 aaKnown RBP29.74■■■□□ 2.35
NDE1-205ENST00000572756 CFTRP13569 1480 aa29.68■■■□□ 2.34
NDE1-205ENST00000572756 CCDC88BA6NC98 1476 aa29.61■■■□□ 2.33
NDE1-205ENST00000572756 FANCD2Q9BXW9 1451 aa29.53■■■□□ 2.32
NDE1-205ENST00000572756 MRC2Q9UBG0 1479 aa29.51■■■□□ 2.31
NDE1-205ENST00000572756 CEP164Q9UPV0 1460 aa29.5■■■□□ 2.31
NDE1-205ENST00000572756 PRDM2Q13029 1718 aa29.48■■■□□ 2.31
NDE1-205ENST00000572756 WDR62O43379 1518 aa29.45■■■□□ 2.31
NDE1-205ENST00000572756 URB2Q14146 1524 aaKnown RBP29.27■■■□□ 2.28
NDE1-205ENST00000572756 SUPT5HO00267 1087 aaKnown RBP29.19■■■□□ 2.26
NDE1-205ENST00000572756 DNAJC5Q9H3Z4 198 aa29.13■■■□□ 2.25
NDE1-205ENST00000572756 TOPBP1Q92547 1522 aa29.04■■■□□ 2.24
NDE1-205ENST00000572756 ABCC8Q09428 1581 aa29.01■■■□□ 2.24
NDE1-205ENST00000572756 DNMBPQ6XZF7 1577 aa29.01■■■□□ 2.23
NDE1-205ENST00000572756 IFT140Q96RY7 1462 aa28.9■■■□□ 2.22
NDE1-205ENST00000572756 ZNF608Q9ULD9 1512 aaPredicted RBP28.8■■■□□ 2.2
NDE1-205ENST00000572756 TARBP1Q13395 1621 aaKnown RBP28.79■■■□□ 2.2
NDE1-205ENST00000572756 POLA1P09884 1462 aaPredicted RBP28.78■■■□□ 2.2
NDE1-205ENST00000572756 CUX1P39880 1505 aa28.77■■■□□ 2.2
NDE1-205ENST00000572756 EIF4G3O43432 1585 aaKnown RBP28.69■■■□□ 2.18
NDE1-205ENST00000572756 FGD5Q6ZNL6 1462 aa28.68■■■□□ 2.18
NDE1-205ENST00000572756 RAD54L2Q9Y4B4 1467 aa28.65■■■□□ 2.18
NDE1-205ENST00000572756 SOGA1O94964 1423 aa28.63■■■□□ 2.17
NDE1-205ENST00000572756 AQRO60306 1485 aaKnown RBP eCLIP28.59■■■□□ 2.171e-6■■□□□ 11.7
NDE1-205ENST00000572756 WDR97A6NE52 1622 aa28.54■■■□□ 2.16
NDE1-205ENST00000572756 OSCARQ8IYS5 282 aa28.5■■■□□ 2.15
NDE1-205ENST00000572756 TDRD9Q8NDG6 1382 aaKnown RBP28.49■■■□□ 2.15
NDE1-205ENST00000572756 BIVM-ERCC5R4GMW8 1640 aa28.48■■■□□ 2.15
NDE1-205ENST00000572756 TOP2BQ02880 1626 aa28.47■■■□□ 2.15
NDE1-205ENST00000572756 WRNQ14191 1432 aaPredicted RBP eCLIP28.46■■■□□ 2.15
NDE1-205ENST00000572756 SYNJ1O43426 1573 aa28.45■■■□□ 2.15
NDE1-205ENST00000572756 ABCA10Q8WWZ4 1543 aa28.41■■■□□ 2.14
NDE1-205ENST00000572756 CHD1O14646 1710 aa28.38■■■□□ 2.13
NDE1-205ENST00000572756 ABCA5Q8WWZ7 1642 aa28.34■■■□□ 2.13
NDE1-205ENST00000572756 GRIN2BQ13224 1484 aa28.34■■■□□ 2.13
NDE1-205ENST00000572756 SNAPC4Q5SXM2 1469 aa28.33■■■□□ 2.13
NDE1-205ENST00000572756 GAPVD1Q14C86 1478 aa28.31■■■□□ 2.12
NDE1-205ENST00000572756 PBRM1Q86U86 1689 aa28.31■■■□□ 2.12
NDE1-205ENST00000572756 MAGI1Q96QZ7 1491 aaPredicted RBP28.29■■■□□ 2.12
NDE1-205ENST00000572756 FBLN2P98095 1184 aa28.2■■■□□ 2.1
NDE1-205ENST00000572756 SYNJ2O15056 1496 aa28.18■■■□□ 2.1
NDE1-205ENST00000572756 RIMBP3CA6NJZ7 1639 aa28.14■■■□□ 2.09
NDE1-205ENST00000572756 RIMBP3BA6NNM3 1639 aa28.14■■■□□ 2.09
NDE1-205ENST00000572756 RIMBP3Q9UFD9 1639 aa28.14■■■□□ 2.09
NDE1-205ENST00000572756 CHMP7Q8WUX9 453 aaPredicted RBP28.12■■■□□ 2.09
NDE1-205ENST00000572756 ARHGEF11O15085 1522 aa28.1■■■□□ 2.09
NDE1-205ENST00000572756 CLASP1Q7Z460 1538 aa28.08■■■□□ 2.09
NDE1-205ENST00000572756 ERICH3Q5RHP9 1530 aa28.07■■■□□ 2.08
NDE1-205ENST00000572756 ADAMTS12P58397 1594 aa28.07■■■□□ 2.08
NDE1-205ENST00000572756 TRIM41Q8WV44 630 aa28.01■■■□□ 2.07
NDE1-205ENST00000572756 GRIN2AQ12879 1464 aa27.99■■■□□ 2.07
NDE1-205ENST00000572756 FHAD1B1AJZ9 1412 aa27.98■■■□□ 2.07
NDE1-205ENST00000572756 NUP160Q12769 1436 aa27.89■■■□□ 2.06
NDE1-205ENST00000572756 CEP170Q5SW79 1584 aa27.88■■■□□ 2.05
NDE1-205ENST00000572756 KIF27Q86VH2 1401 aa27.87■■■□□ 2.05
NDE1-205ENST00000572756 ARAP1Q96P48 1450 aa27.87■■■□□ 2.05
NDE1-205ENST00000572756 IGF1RP08069 1367 aa27.81■■■□□ 2.04
NDE1-205ENST00000572756 CYB5RLQ6IPT4 315 aa27.77■■■□□ 2.04
NDE1-205ENST00000572756 CUL7Q14999 1698 aa27.77■■■□□ 2.04
NDE1-205ENST00000572756 SHROOM2Q13796 1616 aa27.73■■■□□ 2.03
NDE1-205ENST00000572756 ERCC6L2Q5T890 1561 aa27.67■■■□□ 2.02
NDE1-205ENST00000572756 RUSC2Q8N2Y8 1516 aa27.67■■■□□ 2.02
NDE1-205ENST00000572756 CARMIL1Q5VZK9 1371 aa27.62■■■□□ 2.01
Retrieved 100 of 20,778 RNA–protein pairs in 99 ms