RNA–Protein interactions for RNA: ENST00000572579.1

CHD3-214, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 931 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-214ENST00000572579 NISCHQ9Y2I1 1504 aa45.22■■■■■ 4.83
CHD3-214ENST00000572579 ABCC9O60706 1549 aa40.3■■■■■ 4.04
CHD3-214ENST00000572579 CCDC180Q9P1Z9 1646 aa40.26■■■■■ 4.04
CHD3-214ENST00000572579 RB1CC1Q8TDY2 1594 aa38.28■■■■□ 3.72
CHD3-214ENST00000572579 DCAF8L2P0C7V8 631 aa38.15■■■■□ 3.7
CHD3-214ENST00000572579 NACADO15069 1562 aa38.12■■■■□ 3.69
CHD3-214ENST00000572579 DNAJC5BQ9UF47 199 aa37.87■■■■□ 3.65
CHD3-214ENST00000572579 MYO15BQ96JP2 1530 aa37.7■■■■□ 3.63
CHD3-214ENST00000572579 PABPN1Q86U42 306 aaKnown RBP eCLIP37.69■■■■□ 3.62
CHD3-214ENST00000572579 ZCCHC6Q5VYS8 1495 aaKnown RBP37.51■■■■□ 3.59
CHD3-214ENST00000572579 UNC13AQ9UPW8 1703 aa37.39■■■■□ 3.58
CHD3-214ENST00000572579 BICRAQ9NZM4 1560 aa37.33■■■■□ 3.57
CHD3-214ENST00000572579 DCAF1Q9Y4B6 1507 aa37.31■■■■□ 3.56
CHD3-214ENST00000572579 SCRIBQ14160 1630 aa36.84■■■■□ 3.49
CHD3-214ENST00000572579 SHROOM4Q9ULL8 1493 aa36.67■■■■□ 3.46
CHD3-214ENST00000572579 CC2D2AQ9P2K1 1620 aa36.34■■■■□ 3.41
CHD3-214ENST00000572579 EIF4G1Q04637 1599 aaKnown RBP36.32■■■■□ 3.41
CHD3-214ENST00000572579 CECR2Q9BXF3 1484 aa36.25■■■■□ 3.39
CHD3-214ENST00000572579 NCAPD3P42695 1498 aa35.32■■■■□ 3.24
CHD3-214ENST00000572579 ATAD2BQ9ULI0 1458 aa35.24■■■■□ 3.23
CHD3-214ENST00000572579 SMARCA4P51532 1647 aa35.15■■■■□ 3.22
CHD3-214ENST00000572579 SMARCA2P51531 1590 aa35■■■■□ 3.19
CHD3-214ENST00000572579 BAZ1AQ9NRL2 1556 aaPredicted RBP34.99■■■■□ 3.19
CHD3-214ENST00000572579 HMGXB3Q12766 1538 aa34.95■■■■□ 3.19
CHD3-214ENST00000572579 MROH2BQ7Z745 1585 aa34.9■■■■□ 3.18
CHD3-214ENST00000572579 PEG3Q9GZU2 1588 aa34.83■■■■□ 3.17
CHD3-214ENST00000572579 BAZ1BQ9UIG0 1483 aaKnown RBP34.82■■■■□ 3.16
CHD3-214ENST00000572579 NESP48681 1621 aa34.73■■■■□ 3.15
CHD3-214ENST00000572579 ERCC6Q03468 1493 aa34.66■■■■□ 3.14
CHD3-214ENST00000572579 CUX2O14529 1486 aa34.54■■■■□ 3.12
CHD3-214ENST00000572579 DNAJC5Q9H3Z4 198 aa34.47■■■■□ 3.11
CHD3-214ENST00000572579 WIZO95785 1651 aa34.41■■■■□ 3.1
CHD3-214ENST00000572579 LAMC3Q9Y6N6 1575 aa34.33■■■■□ 3.09
CHD3-214ENST00000572579 RSF1Q96T23 1441 aaPredicted RBP34.3■■■■□ 3.08
CHD3-214ENST00000572579 CADPSQ9ULU8 1353 aa34.27■■■■□ 3.08
CHD3-214ENST00000572579 PDS5BQ9NTI5 1447 aa34.2■■■■□ 3.06
CHD3-214ENST00000572579 THOC2Q8NI27 1593 aaKnown RBP34.19■■■■□ 3.06
CHD3-214ENST00000572579 KIF21AQ7Z4S6 1674 aa34.08■■■■□ 3.05
CHD3-214ENST00000572579 TOP2AP11388 1531 aaKnown RBP33.95■■■■□ 3.03
CHD3-214ENST00000572579 CFTRP13569 1480 aa33.9■■■■□ 3.02
CHD3-214ENST00000572579 MRC2Q9UBG0 1479 aa33.89■■■■□ 3.02
CHD3-214ENST00000572579 FANCD2Q9BXW9 1451 aa33.82■■■■□ 3.01
CHD3-214ENST00000572579 WDR62O43379 1518 aa33.79■■■■□ 3
CHD3-214ENST00000572579 CEP164Q9UPV0 1460 aa33.76■■■■□ 3
CHD3-214ENST00000572579 CCDC88BA6NC98 1476 aa33.69■■■□□ 2.98
CHD3-214ENST00000572579 URB2Q14146 1524 aaKnown RBP33.58■■■□□ 2.97
CHD3-214ENST00000572579 PRDM2Q13029 1718 aa33.25■■■□□ 2.91
CHD3-214ENST00000572579 TOPBP1Q92547 1522 aa33.21■■■□□ 2.91
CHD3-214ENST00000572579 ZNF608Q9ULD9 1512 aaPredicted RBP33.17■■■□□ 2.9
CHD3-214ENST00000572579 IFT140Q96RY7 1462 aa33.12■■■□□ 2.89
CHD3-214ENST00000572579 OSCARQ8IYS5 282 aa33.12■■■□□ 2.89
CHD3-214ENST00000572579 ABCC8Q09428 1581 aa33.04■■■□□ 2.88
CHD3-214ENST00000572579 DNMBPQ6XZF7 1577 aa33.03■■■□□ 2.88
CHD3-214ENST00000572579 TRIM41Q8WV44 630 aa32.99■■■□□ 2.87
CHD3-214ENST00000572579 SUPT5HO00267 1087 aaKnown RBP32.94■■■□□ 2.86
CHD3-214ENST00000572579 AQRO60306 1485 aaKnown RBP eCLIP32.9■■■□□ 2.86
CHD3-214ENST00000572579 POLA1P09884 1462 aaPredicted RBP32.9■■■□□ 2.86
CHD3-214ENST00000572579 TARBP1Q13395 1621 aaKnown RBP32.87■■■□□ 2.85
CHD3-214ENST00000572579 RAD54L2Q9Y4B4 1467 aa32.85■■■□□ 2.85
CHD3-214ENST00000572579 EIF4G3O43432 1585 aaKnown RBP32.81■■■□□ 2.84
CHD3-214ENST00000572579 SOGA1O94964 1423 aa32.77■■■□□ 2.84
CHD3-214ENST00000572579 CUX1P39880 1505 aa32.75■■■□□ 2.83
CHD3-214ENST00000572579 TDRD9Q8NDG6 1382 aaKnown RBP32.74■■■□□ 2.83
CHD3-214ENST00000572579 FGD5Q6ZNL6 1462 aa32.71■■■□□ 2.83
CHD3-214ENST00000572579 FBLN2P98095 1184 aa32.58■■■□□ 2.81
CHD3-214ENST00000572579 RIMBP3CA6NJZ7 1639 aa32.55■■■□□ 2.8
CHD3-214ENST00000572579 RIMBP3BA6NNM3 1639 aa32.55■■■□□ 2.8
CHD3-214ENST00000572579 RIMBP3Q9UFD9 1639 aa32.55■■■□□ 2.8
CHD3-214ENST00000572579 ARHGEF11O15085 1522 aa32.51■■■□□ 2.8
CHD3-214ENST00000572579 CHD1O14646 1710 aa32.48■■■□□ 2.79
CHD3-214ENST00000572579 SNAPC4Q5SXM2 1469 aa32.48■■■□□ 2.79
CHD3-214ENST00000572579 GRIN2BQ13224 1484 aa32.4■■■□□ 2.78
CHD3-214ENST00000572579 WDR97A6NE52 1622 aa32.4■■■□□ 2.78
CHD3-214ENST00000572579 CYB5RLQ6IPT4 315 aa32.38■■■□□ 2.77
CHD3-214ENST00000572579 CHMP7Q8WUX9 453 aaPredicted RBP32.37■■■□□ 2.77
CHD3-214ENST00000572579 ABCA10Q8WWZ4 1543 aa32.35■■■□□ 2.77
CHD3-214ENST00000572579 MAGI1Q96QZ7 1491 aaPredicted RBP32.35■■■□□ 2.77
CHD3-214ENST00000572579 GAPVD1Q14C86 1478 aa32.34■■■□□ 2.77
CHD3-214ENST00000572579 SYNJ2O15056 1496 aa32.27■■■□□ 2.76
CHD3-214ENST00000572579 ARAP1Q96P48 1450 aa32.27■■■□□ 2.76
CHD3-214ENST00000572579 WRNQ14191 1432 aaPredicted RBP eCLIP32.26■■■□□ 2.75
CHD3-214ENST00000572579 CLASP1Q7Z460 1538 aa32.24■■■□□ 2.75
CHD3-214ENST00000572579 SYNJ1O43426 1573 aa32.22■■■□□ 2.75
CHD3-214ENST00000572579 ABCA5Q8WWZ7 1642 aa32.21■■■□□ 2.75
CHD3-214ENST00000572579 TOP2BQ02880 1626 aa32.18■■■□□ 2.74
CHD3-214ENST00000572579 BIVM-ERCC5R4GMW8 1640 aa32.14■■■□□ 2.74
CHD3-214ENST00000572579 PBRM1Q86U86 1689 aa32.13■■■□□ 2.73
CHD3-214ENST00000572579 GRIN2AQ12879 1464 aa31.99■■■□□ 2.71
CHD3-214ENST00000572579 ADAMTS12P58397 1594 aa31.95■■■□□ 2.71
CHD3-214ENST00000572579 FHAD1B1AJZ9 1412 aa31.93■■■□□ 2.7
CHD3-214ENST00000572579 NUP160Q12769 1436 aa31.93■■■□□ 2.7
CHD3-214ENST00000572579 ERICH3Q5RHP9 1530 aa31.88■■■□□ 2.69
CHD3-214ENST00000572579 CEP170Q5SW79 1584 aa31.87■■■□□ 2.69
CHD3-214ENST00000572579 TRHP20396 242 aaPredicted RBP31.85■■■□□ 2.69
CHD3-214ENST00000572579 ERCC6L2Q5T890 1561 aa31.85■■■□□ 2.69
CHD3-214ENST00000572579 IGF1RP08069 1367 aa31.72■■■□□ 2.67
CHD3-214ENST00000572579 JPH4Q96JJ6 628 aa31.67■■■□□ 2.66
CHD3-214ENST00000572579 SHROOM2Q13796 1616 aa31.66■■■□□ 2.66
CHD3-214ENST00000572579 KIF27Q86VH2 1401 aa31.6■■■□□ 2.65
CHD3-214ENST00000572579 PRG4Q92954 1404 aaPredicted RBP31.6■■■□□ 2.65
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms