RNA–Protein interactions for RNA: ENST00000572525.5

CHMP6-203, Transcript of charged multivesicular body protein 6, humanhuman

TSL 3

Gene CHMP6, Length 611 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP6-203ENST00000572525 NISCHQ9Y2I1 1504 aa26.33■■□□□ 1.81
CHMP6-203ENST00000572525 ABCC9O60706 1549 aa24.17■■□□□ 1.46
CHMP6-203ENST00000572525 CCDC180Q9P1Z9 1646 aa24.02■■□□□ 1.44
CHMP6-203ENST00000572525 DNAJC5BQ9UF47 199 aa23.04■■□□□ 1.28
CHMP6-203ENST00000572525 RB1CC1Q8TDY2 1594 aa22.99■■□□□ 1.27
CHMP6-203ENST00000572525 NACADO15069 1562 aa22.74■■□□□ 1.23
CHMP6-203ENST00000572525 UNC13AQ9UPW8 1703 aa22.55■■□□□ 1.2
CHMP6-203ENST00000572525 MYO15BQ96JP2 1530 aa22.36■■□□□ 1.17
CHMP6-203ENST00000572525 BICRAQ9NZM4 1560 aa22.31■■□□□ 1.16
CHMP6-203ENST00000572525 PABPN1Q86U42 306 aaKnown RBP eCLIP22.3■■□□□ 1.16
CHMP6-203ENST00000572525 SHROOM4Q9ULL8 1493 aa22.13■■□□□ 1.13
CHMP6-203ENST00000572525 DCAF8L2P0C7V8 631 aa22.09■■□□□ 1.13
CHMP6-203ENST00000572525 CC2D2AQ9P2K1 1620 aa21.94■■□□□ 1.1
CHMP6-203ENST00000572525 CECR2Q9BXF3 1484 aa21.89■■□□□ 1.09
CHMP6-203ENST00000572525 DCAF1Q9Y4B6 1507 aa21.86■■□□□ 1.09
CHMP6-203ENST00000572525 EIF4G1Q04637 1599 aaKnown RBP21.79■■□□□ 1.08
CHMP6-203ENST00000572525 ZCCHC6Q5VYS8 1495 aaKnown RBP21.75■■□□□ 1.07
CHMP6-203ENST00000572525 DNAJC5Q9H3Z4 198 aa21.62■■□□□ 1.05
CHMP6-203ENST00000572525 SCRIBQ14160 1630 aa21.62■■□□□ 1.05
CHMP6-203ENST00000572525 CUX2O14529 1486 aa21.22■□□□□ 0.99
CHMP6-203ENST00000572525 NCAPD3P42695 1498 aa20.94■□□□□ 0.94
CHMP6-203ENST00000572525 ERCC6Q03468 1493 aa20.94■□□□□ 0.94
CHMP6-203ENST00000572525 HMGXB3Q12766 1538 aa20.82■□□□□ 0.92
CHMP6-203ENST00000572525 SMARCA2P51531 1590 aa20.76■□□□□ 0.91
CHMP6-203ENST00000572525 ATAD2BQ9ULI0 1458 aa20.76■□□□□ 0.91
CHMP6-203ENST00000572525 THOC2Q8NI27 1593 aaKnown RBP20.69■□□□□ 0.9
CHMP6-203ENST00000572525 SMARCA4P51532 1647 aa20.68■□□□□ 0.9
CHMP6-203ENST00000572525 NESP48681 1621 aa20.63■□□□□ 0.89
CHMP6-203ENST00000572525 LAMC3Q9Y6N6 1575 aa20.61■□□□□ 0.89
CHMP6-203ENST00000572525 PEG3Q9GZU2 1588 aa20.57■□□□□ 0.88
CHMP6-203ENST00000572525 BAZ1BQ9UIG0 1483 aaKnown RBP20.53■□□□□ 0.88
CHMP6-203ENST00000572525 BAZ1AQ9NRL2 1556 aaPredicted RBP20.51■□□□□ 0.87
CHMP6-203ENST00000572525 KIF21AQ7Z4S6 1674 aa20.51■□□□□ 0.87
CHMP6-203ENST00000572525 PDS5BQ9NTI5 1447 aa20.41■□□□□ 0.86
CHMP6-203ENST00000572525 WDR62O43379 1518 aa20.29■□□□□ 0.84
CHMP6-203ENST00000572525 TRIM41Q8WV44 630 aa20.29■□□□□ 0.84
CHMP6-203ENST00000572525 MRC2Q9UBG0 1479 aa20.26■□□□□ 0.83
CHMP6-203ENST00000572525 CADPSQ9ULU8 1353 aa20.21■□□□□ 0.83
CHMP6-203ENST00000572525 MROH2BQ7Z745 1585 aa20.21■□□□□ 0.83
CHMP6-203ENST00000572525 CEP164Q9UPV0 1460 aa20.09■□□□□ 0.81
CHMP6-203ENST00000572525 OSCARQ8IYS5 282 aa20.01■□□□□ 0.79
CHMP6-203ENST00000572525 FANCD2Q9BXW9 1451 aa19.99■□□□□ 0.79
CHMP6-203ENST00000572525 WIZO95785 1651 aa19.97■□□□□ 0.79
CHMP6-203ENST00000572525 CFTRP13569 1480 aa19.93■□□□□ 0.78
CHMP6-203ENST00000572525 RIMBP3CA6NJZ7 1639 aa19.91■□□□□ 0.78
CHMP6-203ENST00000572525 RIMBP3BA6NNM3 1639 aa19.91■□□□□ 0.78
CHMP6-203ENST00000572525 RIMBP3Q9UFD9 1639 aa19.91■□□□□ 0.78
CHMP6-203ENST00000572525 PRDM2Q13029 1718 aa19.9■□□□□ 0.78
CHMP6-203ENST00000572525 URB2Q14146 1524 aaKnown RBP19.86■□□□□ 0.77
CHMP6-203ENST00000572525 ARHGEF11O15085 1522 aa19.77■□□□□ 0.76
CHMP6-203ENST00000572525 TOP2AP11388 1531 aaKnown RBP19.75■□□□□ 0.75
CHMP6-203ENST00000572525 IFT140Q96RY7 1462 aa19.72■□□□□ 0.75
CHMP6-203ENST00000572525 ZNF608Q9ULD9 1512 aaPredicted RBP19.64■□□□□ 0.73
CHMP6-203ENST00000572525 EIF4G3O43432 1585 aaKnown RBP19.62■□□□□ 0.73
CHMP6-203ENST00000572525 RSF1Q96T23 1441 aaPredicted RBP19.61■□□□□ 0.73
CHMP6-203ENST00000572525 ABCC8Q09428 1581 aa19.6■□□□□ 0.73
CHMP6-203ENST00000572525 CHD1O14646 1710 aa19.59■□□□□ 0.73
CHMP6-203ENST00000572525 TOPBP1Q92547 1522 aa19.58■□□□□ 0.73
CHMP6-203ENST00000572525 ARAP1Q96P48 1450 aa19.52■□□□□ 0.72
CHMP6-203ENST00000572525 DNMBPQ6XZF7 1577 aa19.52■□□□□ 0.71
CHMP6-203ENST00000572525 TARBP1Q13395 1621 aaKnown RBP19.51■□□□□ 0.71
CHMP6-203ENST00000572525 CYB5RLQ6IPT4 315 aa19.48■□□□□ 0.71
CHMP6-203ENST00000572525 CCDC88BA6NC98 1476 aa19.43■□□□□ 0.7
CHMP6-203ENST00000572525 WDR97A6NE52 1622 aa19.41■□□□□ 0.7
CHMP6-203ENST00000572525 TRHP20396 242 aaPredicted RBP19.4■□□□□ 0.7
CHMP6-203ENST00000572525 AQRO60306 1485 aaKnown RBP eCLIP19.37■□□□□ 0.695e-10■■■■■ 50.7
CHMP6-203ENST00000572525 CLASP1Q7Z460 1538 aa19.35■□□□□ 0.69
CHMP6-203ENST00000572525 POLA1P09884 1462 aaPredicted RBP19.34■□□□□ 0.69
CHMP6-203ENST00000572525 SYNJ1O43426 1573 aa19.29■□□□□ 0.68
CHMP6-203ENST00000572525 MAGI1Q96QZ7 1491 aaPredicted RBP19.25■□□□□ 0.67
CHMP6-203ENST00000572525 FBLN2P98095 1184 aa19.23■□□□□ 0.67
CHMP6-203ENST00000572525 AEBP2Q6ZN18 517 aaPredicted RBP19.22■□□□□ 0.67
CHMP6-203ENST00000572525 SNAPC4Q5SXM2 1469 aa19.22■□□□□ 0.67
CHMP6-203ENST00000572525 SOGA1O94964 1423 aa19.18■□□□□ 0.66
CHMP6-203ENST00000572525 RAD54L2Q9Y4B4 1467 aa19.18■□□□□ 0.66
CHMP6-203ENST00000572525 TDRD9Q8NDG6 1382 aaKnown RBP19.15■□□□□ 0.66
CHMP6-203ENST00000572525 SYNJ2O15056 1496 aa19.15■□□□□ 0.66
CHMP6-203ENST00000572525 GRIN2BQ13224 1484 aa19.15■□□□□ 0.66
CHMP6-203ENST00000572525 PBRM1Q86U86 1689 aa19.13■□□□□ 0.65
CHMP6-203ENST00000572525 FGD5Q6ZNL6 1462 aa19.12■□□□□ 0.65
CHMP6-203ENST00000572525 CHMP7Q8WUX9 453 aaPredicted RBP19.1■□□□□ 0.65
CHMP6-203ENST00000572525 GAPVD1Q14C86 1478 aa19.09■□□□□ 0.65
CHMP6-203ENST00000572525 CUX1P39880 1505 aa19.05■□□□□ 0.64
CHMP6-203ENST00000572525 ABCA5Q8WWZ7 1642 aa19■□□□□ 0.63
CHMP6-203ENST00000572525 KIF13AQ9H1H9 1805 aa18.97■□□□□ 0.63
CHMP6-203ENST00000572525 ABCA10Q8WWZ4 1543 aa18.95■□□□□ 0.62
CHMP6-203ENST00000572525 SHROOM2Q13796 1616 aa18.93■□□□□ 0.62
CHMP6-203ENST00000572525 GRIN2AQ12879 1464 aa18.9■□□□□ 0.62
CHMP6-203ENST00000572525 CEP170Q5SW79 1584 aa18.89■□□□□ 0.62
CHMP6-203ENST00000572525 ERCC6L2Q5T890 1561 aa18.89■□□□□ 0.61
CHMP6-203ENST00000572525 NUP160Q12769 1436 aa18.88■□□□□ 0.61
CHMP6-203ENST00000572525 ADAMTS12P58397 1594 aa18.87■□□□□ 0.61
CHMP6-203ENST00000572525 FHAD1B1AJZ9 1412 aa18.74■□□□□ 0.59
CHMP6-203ENST00000572525 BIVM-ERCC5R4GMW8 1640 aa18.74■□□□□ 0.59
CHMP6-203ENST00000572525 ERICH3Q5RHP9 1530 aa18.74■□□□□ 0.59
CHMP6-203ENST00000572525 MAPKBP1O60336 1514 aa18.72■□□□□ 0.59
CHMP6-203ENST00000572525 WRNQ14191 1432 aaPredicted RBP eCLIP18.72■□□□□ 0.59
CHMP6-203ENST00000572525 ABCC10Q5T3U5 1492 aa18.7■□□□□ 0.58
CHMP6-203ENST00000572525 TOP2BQ02880 1626 aa18.68■□□□□ 0.58
CHMP6-203ENST00000572525 DIP2BQ9P265 1576 aa18.68■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms