RNA–Protein interactions for RNA: ENST00000572290.1

NUP88-204, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 615 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-204ENST00000572290 NISCHQ9Y2I1 1504 aa49.24■■■■■ 5.47
NUP88-204ENST00000572290 CCDC180Q9P1Z9 1646 aa43.77■■■■■ 4.6
NUP88-204ENST00000572290 ABCC9O60706 1549 aa43.21■■■■■ 4.51
NUP88-204ENST00000572290 RB1CC1Q8TDY2 1594 aa41.4■■■■■ 4.22
NUP88-204ENST00000572290 DCAF8L2P0C7V8 631 aa41.35■■■■■ 4.21
NUP88-204ENST00000572290 NACADO15069 1562 aa41.29■■■■■ 4.2
NUP88-204ENST00000572290 MYO15BQ96JP2 1530 aa40.98■■■■■ 4.15
NUP88-204ENST00000572290 ZCCHC6Q5VYS8 1495 aaKnown RBP40.96■■■■■ 4.15
NUP88-204ENST00000572290 DCAF1Q9Y4B6 1507 aa40.71■■■■■ 4.11
NUP88-204ENST00000572290 PABPN1Q86U42 306 aaKnown RBP eCLIP40.39■■■■■ 4.06
NUP88-204ENST00000572290 UNC13AQ9UPW8 1703 aa40.27■■■■■ 4.04
NUP88-204ENST00000572290 BICRAQ9NZM4 1560 aa40.13■■■■■ 4.01
NUP88-204ENST00000572290 SCRIBQ14160 1630 aa39.98■■■■□ 3.99
NUP88-204ENST00000572290 DNAJC5BQ9UF47 199 aa39.92■■■■□ 3.98
NUP88-204ENST00000572290 SHROOM4Q9ULL8 1493 aa39.73■■■■□ 3.95
NUP88-204ENST00000572290 EIF4G1Q04637 1599 aaKnown RBP39.12■■■■□ 3.85
NUP88-204ENST00000572290 CC2D2AQ9P2K1 1620 aa39■■■■□ 3.83
NUP88-204ENST00000572290 CECR2Q9BXF3 1484 aa38.86■■■■□ 3.81
NUP88-204ENST00000572290 SMARCA4P51532 1647 aa38.2■■■■□ 3.71
NUP88-204ENST00000572290 BAZ1AQ9NRL2 1556 aaPredicted RBP38.17■■■■□ 3.7
NUP88-204ENST00000572290 NCAPD3P42695 1498 aa38.15■■■■□ 3.7
NUP88-204ENST00000572290 ATAD2BQ9ULI0 1458 aa38.14■■■■□ 3.7
NUP88-204ENST00000572290 SMARCA2P51531 1590 aa38.04■■■■□ 3.68
NUP88-204ENST00000572290 MROH2BQ7Z745 1585 aa37.94■■■■□ 3.66
NUP88-204ENST00000572290 HMGXB3Q12766 1538 aa37.89■■■■□ 3.66
NUP88-204ENST00000572290 PEG3Q9GZU2 1588 aa37.84■■■■□ 3.65
NUP88-204ENST00000572290 BAZ1BQ9UIG0 1483 aaKnown RBP37.8■■■■□ 3.64
NUP88-204ENST00000572290 RSF1Q96T23 1441 aaPredicted RBP37.45■■■■□ 3.59
NUP88-204ENST00000572290 WIZO95785 1651 aa37.45■■■■□ 3.59
NUP88-204ENST00000572290 NESP48681 1621 aa37.29■■■■□ 3.56
NUP88-204ENST00000572290 ERCC6Q03468 1493 aa37.27■■■■□ 3.56
NUP88-204ENST00000572290 LAMC3Q9Y6N6 1575 aa37.13■■■■□ 3.53
NUP88-204ENST00000572290 TOP2AP11388 1531 aaKnown RBP37.09■■■■□ 3.53
NUP88-204ENST00000572290 CADPSQ9ULU8 1353 aa37.06■■■■□ 3.52
NUP88-204ENST00000572290 PDS5BQ9NTI5 1447 aa36.97■■■■□ 3.51
NUP88-204ENST00000572290 CUX2O14529 1486 aa36.94■■■■□ 3.5
NUP88-204ENST00000572290 CFTRP13569 1480 aa36.75■■■■□ 3.47
NUP88-204ENST00000572290 KIF21AQ7Z4S6 1674 aa36.72■■■■□ 3.47
NUP88-204ENST00000572290 THOC2Q8NI27 1593 aaKnown RBP36.72■■■■□ 3.47
NUP88-204ENST00000572290 CCDC88BA6NC98 1476 aa36.69■■■■□ 3.46
NUP88-204ENST00000572290 FANCD2Q9BXW9 1451 aa36.61■■■■□ 3.45
NUP88-204ENST00000572290 MRC2Q9UBG0 1479 aa36.57■■■■□ 3.45
NUP88-204ENST00000572290 CEP164Q9UPV0 1460 aa36.57■■■■□ 3.45
NUP88-204ENST00000572290 WDR62O43379 1518 aa36.43■■■■□ 3.42
NUP88-204ENST00000572290 SUPT5HO00267 1087 aaKnown RBP36.37■■■■□ 3.41
NUP88-204ENST00000572290 URB2Q14146 1524 aaKnown RBP36.24■■■■□ 3.39
NUP88-204ENST00000572290 PRDM2Q13029 1718 aa36.22■■■■□ 3.39
NUP88-204ENST00000572290 DNAJC5Q9H3Z4 198 aa36.16■■■■□ 3.38
NUP88-204ENST00000572290 TOPBP1Q92547 1522 aa35.98■■■■□ 3.35
NUP88-204ENST00000572290 ABCC8Q09428 1581 aa35.97■■■■□ 3.35
NUP88-204ENST00000572290 DNMBPQ6XZF7 1577 aa35.89■■■■□ 3.34
NUP88-204ENST00000572290 IFT140Q96RY7 1462 aa35.83■■■■□ 3.33
NUP88-204ENST00000572290 ZNF608Q9ULD9 1512 aaPredicted RBP35.68■■■■□ 3.3
NUP88-204ENST00000572290 POLA1P09884 1462 aaPredicted RBP35.66■■■■□ 3.3
NUP88-204ENST00000572290 CUX1P39880 1505 aa35.6■■■■□ 3.29
NUP88-204ENST00000572290 SOGA1O94964 1423 aa35.55■■■■□ 3.28
NUP88-204ENST00000572290 TARBP1Q13395 1621 aaKnown RBP35.54■■■■□ 3.28
NUP88-204ENST00000572290 FGD5Q6ZNL6 1462 aa35.54■■■■□ 3.28
NUP88-204ENST00000572290 RAD54L2Q9Y4B4 1467 aa35.53■■■■□ 3.28
NUP88-204ENST00000572290 AQRO60306 1485 aaKnown RBP eCLIP35.48■■■■□ 3.271e-8■■■□□ 16.2
NUP88-204ENST00000572290 EIF4G3O43432 1585 aaKnown RBP35.47■■■■□ 3.27
NUP88-204ENST00000572290 OSCARQ8IYS5 282 aa35.43■■■■□ 3.26
NUP88-204ENST00000572290 TDRD9Q8NDG6 1382 aaKnown RBP35.39■■■■□ 3.26
NUP88-204ENST00000572290 WRNQ14191 1432 aaPredicted RBP eCLIP35.32■■■■□ 3.25
NUP88-204ENST00000572290 WDR97A6NE52 1622 aa35.25■■■■□ 3.23
NUP88-204ENST00000572290 TOP2BQ02880 1626 aa35.2■■■■□ 3.23
NUP88-204ENST00000572290 ABCA10Q8WWZ4 1543 aa35.18■■■■□ 3.22
NUP88-204ENST00000572290 SYNJ1O43426 1573 aa35.17■■■■□ 3.22
NUP88-204ENST00000572290 BIVM-ERCC5R4GMW8 1640 aa35.16■■■■□ 3.22
NUP88-204ENST00000572290 FBLN2P98095 1184 aa35.15■■■■□ 3.22
NUP88-204ENST00000572290 GRIN2BQ13224 1484 aa35.15■■■■□ 3.22
NUP88-204ENST00000572290 SNAPC4Q5SXM2 1469 aa35.12■■■■□ 3.21
NUP88-204ENST00000572290 GAPVD1Q14C86 1478 aa35.1■■■■□ 3.21
NUP88-204ENST00000572290 MAGI1Q96QZ7 1491 aaPredicted RBP35.05■■■■□ 3.2
NUP88-204ENST00000572290 CHMP7Q8WUX9 453 aaPredicted RBP35.01■■■■□ 3.2
NUP88-204ENST00000572290 ABCA5Q8WWZ7 1642 aa35■■■■□ 3.19
NUP88-204ENST00000572290 CHD1O14646 1710 aa34.98■■■■□ 3.19
NUP88-204ENST00000572290 SYNJ2O15056 1496 aa34.93■■■■□ 3.18
NUP88-204ENST00000572290 PBRM1Q86U86 1689 aa34.9■■■■□ 3.18
NUP88-204ENST00000572290 TRIM41Q8WV44 630 aa34.89■■■■□ 3.18
NUP88-204ENST00000572290 ARHGEF11O15085 1522 aa34.79■■■■□ 3.16
NUP88-204ENST00000572290 RIMBP3CA6NJZ7 1639 aa34.77■■■■□ 3.16
NUP88-204ENST00000572290 RIMBP3BA6NNM3 1639 aa34.77■■■■□ 3.16
NUP88-204ENST00000572290 RIMBP3Q9UFD9 1639 aa34.77■■■■□ 3.16
NUP88-204ENST00000572290 ERICH3Q5RHP9 1530 aa34.74■■■■□ 3.15
NUP88-204ENST00000572290 FHAD1B1AJZ9 1412 aa34.71■■■■□ 3.15
NUP88-204ENST00000572290 CLASP1Q7Z460 1538 aa34.71■■■■□ 3.15
NUP88-204ENST00000572290 ADAMTS12P58397 1594 aa34.7■■■■□ 3.15
NUP88-204ENST00000572290 GRIN2AQ12879 1464 aa34.67■■■■□ 3.14
NUP88-204ENST00000572290 KIF27Q86VH2 1401 aa34.62■■■■□ 3.13
NUP88-204ENST00000572290 CYB5RLQ6IPT4 315 aa34.56■■■■□ 3.12
NUP88-204ENST00000572290 NUP160Q12769 1436 aa34.54■■■■□ 3.12
NUP88-204ENST00000572290 IGF1RP08069 1367 aa34.52■■■■□ 3.12
NUP88-204ENST00000572290 ARAP1Q96P48 1450 aa34.51■■■■□ 3.11
NUP88-204ENST00000572290 CEP170Q5SW79 1584 aa34.47■■■■□ 3.11
NUP88-204ENST00000572290 CUL7Q14999 1698 aa34.31■■■■□ 3.08
NUP88-204ENST00000572290 CARMIL1Q5VZK9 1371 aa34.31■■■■□ 3.08
NUP88-204ENST00000572290 JPH4Q96JJ6 628 aa34.24■■■■□ 3.07
NUP88-204ENST00000572290 SHROOM2Q13796 1616 aa34.22■■■■□ 3.07
NUP88-204ENST00000572290 ERCC6L2Q5T890 1561 aa34.21■■■■□ 3.07
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms