RNA–Protein interactions for RNA: ENST00000572083.5

CCDC40-206, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 816 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-206ENST00000572083 NISCHQ9Y2I1 1504 aa50.52■■■■■ 5.68
CCDC40-206ENST00000572083 ABCC9O60706 1549 aa46.02■■■■■ 4.96
CCDC40-206ENST00000572083 CCDC180Q9P1Z9 1646 aa45.55■■■■■ 4.88
CCDC40-206ENST00000572083 RB1CC1Q8TDY2 1594 aa43.56■■■■■ 4.56
CCDC40-206ENST00000572083 DNAJC5BQ9UF47 199 aa43.51■■■■■ 4.56
CCDC40-206ENST00000572083 NACADO15069 1562 aa43.13■■■■■ 4.5
CCDC40-206ENST00000572083 DCAF8L2P0C7V8 631 aa42.84■■■■■ 4.45
CCDC40-206ENST00000572083 PABPN1Q86U42 306 aaKnown RBP eCLIP42.75■■■■■ 4.43
CCDC40-206ENST00000572083 UNC13AQ9UPW8 1703 aa42.63■■■■■ 4.42
CCDC40-206ENST00000572083 MYO15BQ96JP2 1530 aa42.36■■■■■ 4.37
CCDC40-206ENST00000572083 BICRAQ9NZM4 1560 aa42.34■■■■■ 4.37
CCDC40-206ENST00000572083 ZCCHC6Q5VYS8 1495 aaKnown RBP41.8■■■■■ 4.28
CCDC40-206ENST00000572083 DCAF1Q9Y4B6 1507 aa41.67■■■■■ 4.26
CCDC40-206ENST00000572083 SHROOM4Q9ULL8 1493 aa41.66■■■■■ 4.26
CCDC40-206ENST00000572083 SCRIBQ14160 1630 aa41.55■■■■■ 4.24
CCDC40-206ENST00000572083 CC2D2AQ9P2K1 1620 aa41.54■■■■■ 4.24
CCDC40-206ENST00000572083 CECR2Q9BXF3 1484 aa41.47■■■■■ 4.23
CCDC40-206ENST00000572083 EIF4G1Q04637 1599 aaKnown RBP41.33■■■■■ 4.21
CCDC40-206ENST00000572083 DNAJC5Q9H3Z4 198 aa40.22■■■■■ 4.03
CCDC40-206ENST00000572083 NCAPD3P42695 1498 aa39.81■■■■□ 3.96
CCDC40-206ENST00000572083 CUX2O14529 1486 aa39.79■■■■□ 3.96
CCDC40-206ENST00000572083 ERCC6Q03468 1493 aa39.75■■■■□ 3.95
CCDC40-206ENST00000572083 ATAD2BQ9ULI0 1458 aa39.66■■■■□ 3.94
CCDC40-206ENST00000572083 SMARCA4P51532 1647 aa39.54■■■■□ 3.92
CCDC40-206ENST00000572083 SMARCA2P51531 1590 aa39.52■■■■□ 3.92
CCDC40-206ENST00000572083 HMGXB3Q12766 1538 aa39.52■■■■□ 3.92
CCDC40-206ENST00000572083 NESP48681 1621 aa39.42■■■■□ 3.9
CCDC40-206ENST00000572083 BAZ1BQ9UIG0 1483 aaKnown RBP39.28■■■■□ 3.88
CCDC40-206ENST00000572083 BAZ1AQ9NRL2 1556 aaPredicted RBP39.25■■■■□ 3.87
CCDC40-206ENST00000572083 PEG3Q9GZU2 1588 aa39.12■■■■□ 3.85
CCDC40-206ENST00000572083 THOC2Q8NI27 1593 aaKnown RBP39.12■■■■□ 3.85
CCDC40-206ENST00000572083 LAMC3Q9Y6N6 1575 aa39.02■■■■□ 3.84
CCDC40-206ENST00000572083 MROH2BQ7Z745 1585 aa38.95■■■■□ 3.83
CCDC40-206ENST00000572083 KIF21AQ7Z4S6 1674 aa38.91■■■■□ 3.82
CCDC40-206ENST00000572083 PDS5BQ9NTI5 1447 aa38.78■■■■□ 3.8
CCDC40-206ENST00000572083 CADPSQ9ULU8 1353 aa38.58■■■■□ 3.77
CCDC40-206ENST00000572083 MRC2Q9UBG0 1479 aa38.52■■■■□ 3.76
CCDC40-206ENST00000572083 WIZO95785 1651 aa38.49■■■■□ 3.75
CCDC40-206ENST00000572083 WDR62O43379 1518 aa38.44■■■■□ 3.74
CCDC40-206ENST00000572083 TRIM41Q8WV44 630 aa38.37■■■■□ 3.73
CCDC40-206ENST00000572083 CEP164Q9UPV0 1460 aa38.28■■■■□ 3.72
CCDC40-206ENST00000572083 FANCD2Q9BXW9 1451 aa38.2■■■■□ 3.71
CCDC40-206ENST00000572083 CFTRP13569 1480 aa38.07■■■■□ 3.68
CCDC40-206ENST00000572083 RSF1Q96T23 1441 aaPredicted RBP37.96■■■■□ 3.67
CCDC40-206ENST00000572083 TOP2AP11388 1531 aaKnown RBP37.95■■■■□ 3.67
CCDC40-206ENST00000572083 URB2Q14146 1524 aaKnown RBP37.92■■■■□ 3.66
CCDC40-206ENST00000572083 OSCARQ8IYS5 282 aa37.85■■■■□ 3.65
CCDC40-206ENST00000572083 PRDM2Q13029 1718 aa37.7■■■■□ 3.63
CCDC40-206ENST00000572083 ZNF608Q9ULD9 1512 aaPredicted RBP37.54■■■■□ 3.6
CCDC40-206ENST00000572083 RIMBP3CA6NJZ7 1639 aa37.51■■■■□ 3.6
CCDC40-206ENST00000572083 RIMBP3BA6NNM3 1639 aa37.51■■■■□ 3.6
CCDC40-206ENST00000572083 RIMBP3Q9UFD9 1639 aa37.51■■■■□ 3.6
CCDC40-206ENST00000572083 CCDC88BA6NC98 1476 aa37.51■■■■□ 3.59
CCDC40-206ENST00000572083 IFT140Q96RY7 1462 aa37.5■■■■□ 3.59
CCDC40-206ENST00000572083 TOPBP1Q92547 1522 aa37.42■■■■□ 3.58
CCDC40-206ENST00000572083 ARHGEF11O15085 1522 aa37.34■■■■□ 3.57
CCDC40-206ENST00000572083 EIF4G3O43432 1585 aaKnown RBP37.34■■■■□ 3.57
CCDC40-206ENST00000572083 DNMBPQ6XZF7 1577 aa37.25■■■■□ 3.55
CCDC40-206ENST00000572083 ABCC8Q09428 1581 aa37.24■■■■□ 3.55
CCDC40-206ENST00000572083 TARBP1Q13395 1621 aaKnown RBP37.14■■■■□ 3.54
CCDC40-206ENST00000572083 CHD1O14646 1710 aa37.13■■■■□ 3.54
CCDC40-206ENST00000572083 AQRO60306 1485 aaKnown RBP eCLIP37.13■■■■□ 3.53
CCDC40-206ENST00000572083 CYB5RLQ6IPT4 315 aa37.04■■■■□ 3.52
CCDC40-206ENST00000572083 POLA1P09884 1462 aaPredicted RBP37.02■■■■□ 3.52
CCDC40-206ENST00000572083 FBLN2P98095 1184 aa36.96■■■■□ 3.51
CCDC40-206ENST00000572083 ARAP1Q96P48 1450 aa36.94■■■■□ 3.5
CCDC40-206ENST00000572083 RAD54L2Q9Y4B4 1467 aa36.91■■■■□ 3.5
CCDC40-206ENST00000572083 TDRD9Q8NDG6 1382 aaKnown RBP36.81■■■■□ 3.48
CCDC40-206ENST00000572083 SOGA1O94964 1423 aa36.8■■■■□ 3.48
CCDC40-206ENST00000572083 TRHP20396 242 aaPredicted RBP36.8■■■■□ 3.48
CCDC40-206ENST00000572083 SNAPC4Q5SXM2 1469 aa36.75■■■■□ 3.47
CCDC40-206ENST00000572083 FGD5Q6ZNL6 1462 aa36.74■■■■□ 3.47
CCDC40-206ENST00000572083 WDR97A6NE52 1622 aa36.68■■■■□ 3.46
CCDC40-206ENST00000572083 CLASP1Q7Z460 1538 aa36.67■■■■□ 3.46
CCDC40-206ENST00000572083 CUX1P39880 1505 aa36.64■■■■□ 3.46
CCDC40-206ENST00000572083 SYNJ1O43426 1573 aa36.59■■■■□ 3.45
CCDC40-206ENST00000572083 MAGI1Q96QZ7 1491 aaPredicted RBP36.59■■■■□ 3.45
CCDC40-206ENST00000572083 CHMP7Q8WUX9 453 aaPredicted RBP36.58■■■■□ 3.45
CCDC40-206ENST00000572083 GRIN2BQ13224 1484 aa36.55■■■■□ 3.44
CCDC40-206ENST00000572083 SYNJ2O15056 1496 aa36.49■■■■□ 3.43
CCDC40-206ENST00000572083 PBRM1Q86U86 1689 aa36.44■■■■□ 3.42
CCDC40-206ENST00000572083 GAPVD1Q14C86 1478 aa36.37■■■■□ 3.41
CCDC40-206ENST00000572083 ABCA5Q8WWZ7 1642 aa36.28■■■■□ 3.4
CCDC40-206ENST00000572083 ABCA10Q8WWZ4 1543 aa36.26■■■■□ 3.4
CCDC40-206ENST00000572083 ERCC6L2Q5T890 1561 aa36.1■■■■□ 3.37
CCDC40-206ENST00000572083 GRIN2AQ12879 1464 aa36.1■■■■□ 3.37
CCDC40-206ENST00000572083 ADAMTS12P58397 1594 aa36.06■■■■□ 3.36
CCDC40-206ENST00000572083 AEBP2Q6ZN18 517 aaPredicted RBP36.03■■■■□ 3.36
CCDC40-206ENST00000572083 CEP170Q5SW79 1584 aa36.02■■■■□ 3.36
CCDC40-206ENST00000572083 WRNQ14191 1432 aaPredicted RBP eCLIP36.01■■■■□ 3.36
CCDC40-206ENST00000572083 NUP160Q12769 1436 aa35.98■■■■□ 3.35
CCDC40-206ENST00000572083 SUPT5HO00267 1087 aaKnown RBP35.97■■■■□ 3.35
CCDC40-206ENST00000572083 BIVM-ERCC5R4GMW8 1640 aa35.93■■■■□ 3.34
CCDC40-206ENST00000572083 TOP2BQ02880 1626 aa35.91■■■■□ 3.34
CCDC40-206ENST00000572083 SHROOM2Q13796 1616 aa35.89■■■■□ 3.34
CCDC40-206ENST00000572083 FHAD1B1AJZ9 1412 aa35.87■■■■□ 3.33
CCDC40-206ENST00000572083 ERICH3Q5RHP9 1530 aa35.8■■■■□ 3.32
CCDC40-206ENST00000572083 PRG4Q92954 1404 aaPredicted RBP35.68■■■■□ 3.3
CCDC40-206ENST00000572083 KIF13AQ9H1H9 1805 aa35.67■■■■□ 3.3
CCDC40-206ENST00000572083 RUSC2Q8N2Y8 1516 aa35.57■■■■□ 3.28
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms