RNA–Protein interactions for RNA: ENST00000572019.1

NUP88-203, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-203ENST00000572019 NISCHQ9Y2I1 1504 aa48.87■■■■■ 5.41
NUP88-203ENST00000572019 ABCC9O60706 1549 aa44.34■■■■■ 4.69
NUP88-203ENST00000572019 CCDC180Q9P1Z9 1646 aa43.97■■■■■ 4.63
NUP88-203ENST00000572019 DNAJC5BQ9UF47 199 aa41.96■■■■■ 4.31
NUP88-203ENST00000572019 RB1CC1Q8TDY2 1594 aa41.96■■■■■ 4.31
NUP88-203ENST00000572019 NACADO15069 1562 aa41.59■■■■■ 4.25
NUP88-203ENST00000572019 DCAF8L2P0C7V8 631 aa41.34■■■■■ 4.21
NUP88-203ENST00000572019 UNC13AQ9UPW8 1703 aa41.26■■■■■ 4.2
NUP88-203ENST00000572019 PABPN1Q86U42 306 aaKnown RBP eCLIP41.24■■■■■ 4.19
NUP88-203ENST00000572019 BICRAQ9NZM4 1560 aa40.92■■■■■ 4.14
NUP88-203ENST00000572019 MYO15BQ96JP2 1530 aa40.87■■■■■ 4.13
NUP88-203ENST00000572019 ZCCHC6Q5VYS8 1495 aaKnown RBP40.45■■■■■ 4.07
NUP88-203ENST00000572019 DCAF1Q9Y4B6 1507 aa40.26■■■■■ 4.04
NUP88-203ENST00000572019 SCRIBQ14160 1630 aa40.15■■■■■ 4.02
NUP88-203ENST00000572019 SHROOM4Q9ULL8 1493 aa40.07■■■■■ 4
NUP88-203ENST00000572019 CC2D2AQ9P2K1 1620 aa40.05■■■■■ 4
NUP88-203ENST00000572019 CECR2Q9BXF3 1484 aa39.92■■■■□ 3.98
NUP88-203ENST00000572019 EIF4G1Q04637 1599 aaKnown RBP39.86■■■■□ 3.97
NUP88-203ENST00000572019 DNAJC5Q9H3Z4 198 aa38.58■■■■□ 3.77
NUP88-203ENST00000572019 NCAPD3P42695 1498 aa38.41■■■■□ 3.74
NUP88-203ENST00000572019 ATAD2BQ9ULI0 1458 aa38.31■■■■□ 3.72
NUP88-203ENST00000572019 SMARCA4P51532 1647 aa38.23■■■■□ 3.71
NUP88-203ENST00000572019 CUX2O14529 1486 aa38.21■■■■□ 3.71
NUP88-203ENST00000572019 ERCC6Q03468 1493 aa38.2■■■■□ 3.71
NUP88-203ENST00000572019 SMARCA2P51531 1590 aa38.11■■■■□ 3.69
NUP88-203ENST00000572019 HMGXB3Q12766 1538 aa38.11■■■■□ 3.69
NUP88-203ENST00000572019 NESP48681 1621 aa38.07■■■■□ 3.68
NUP88-203ENST00000572019 BAZ1AQ9NRL2 1556 aaPredicted RBP37.9■■■■□ 3.66
NUP88-203ENST00000572019 BAZ1BQ9UIG0 1483 aaKnown RBP37.88■■■■□ 3.65
NUP88-203ENST00000572019 PEG3Q9GZU2 1588 aa37.8■■■■□ 3.64
NUP88-203ENST00000572019 MROH2BQ7Z745 1585 aa37.73■■■■□ 3.63
NUP88-203ENST00000572019 THOC2Q8NI27 1593 aaKnown RBP37.72■■■■□ 3.63
NUP88-203ENST00000572019 LAMC3Q9Y6N6 1575 aa37.59■■■■□ 3.61
NUP88-203ENST00000572019 KIF21AQ7Z4S6 1674 aa37.58■■■■□ 3.61
NUP88-203ENST00000572019 PDS5BQ9NTI5 1447 aa37.32■■■■□ 3.56
NUP88-203ENST00000572019 WIZO95785 1651 aa37.31■■■■□ 3.56
NUP88-203ENST00000572019 CADPSQ9ULU8 1353 aa37.22■■■■□ 3.55
NUP88-203ENST00000572019 MRC2Q9UBG0 1479 aa37.11■■■■□ 3.53
NUP88-203ENST00000572019 WDR62O43379 1518 aa37.06■■■■□ 3.52
NUP88-203ENST00000572019 CEP164Q9UPV0 1460 aa36.88■■■■□ 3.5
NUP88-203ENST00000572019 FANCD2Q9BXW9 1451 aa36.84■■■■□ 3.49
NUP88-203ENST00000572019 TRIM41Q8WV44 630 aa36.81■■■■□ 3.48
NUP88-203ENST00000572019 RSF1Q96T23 1441 aaPredicted RBP36.77■■■■□ 3.48
NUP88-203ENST00000572019 CFTRP13569 1480 aa36.76■■■■□ 3.48
NUP88-203ENST00000572019 TOP2AP11388 1531 aaKnown RBP36.69■■■■□ 3.46
NUP88-203ENST00000572019 URB2Q14146 1524 aaKnown RBP36.64■■■■□ 3.46
NUP88-203ENST00000572019 PRDM2Q13029 1718 aa36.46■■■■□ 3.43
NUP88-203ENST00000572019 OSCARQ8IYS5 282 aa36.39■■■■□ 3.42
NUP88-203ENST00000572019 CCDC88BA6NC98 1476 aa36.31■■■■□ 3.4
NUP88-203ENST00000572019 ZNF608Q9ULD9 1512 aaPredicted RBP36.26■■■■□ 3.4
NUP88-203ENST00000572019 TOPBP1Q92547 1522 aa36.14■■■■□ 3.38
NUP88-203ENST00000572019 IFT140Q96RY7 1462 aa36.13■■■■□ 3.37
NUP88-203ENST00000572019 RIMBP3CA6NJZ7 1639 aa36.12■■■■□ 3.37
NUP88-203ENST00000572019 RIMBP3BA6NNM3 1639 aa36.12■■■■□ 3.37
NUP88-203ENST00000572019 RIMBP3Q9UFD9 1639 aa36.12■■■■□ 3.37
NUP88-203ENST00000572019 EIF4G3O43432 1585 aaKnown RBP36.02■■■■□ 3.36
NUP88-203ENST00000572019 DNMBPQ6XZF7 1577 aa35.96■■■■□ 3.35
NUP88-203ENST00000572019 ARHGEF11O15085 1522 aa35.93■■■■□ 3.34
NUP88-203ENST00000572019 TARBP1Q13395 1621 aaKnown RBP35.89■■■■□ 3.34
NUP88-203ENST00000572019 ABCC8Q09428 1581 aa35.88■■■■□ 3.33
NUP88-203ENST00000572019 CHD1O14646 1710 aa35.86■■■■□ 3.33
NUP88-203ENST00000572019 AQRO60306 1485 aaKnown RBP eCLIP35.84■■■■□ 3.331e-8■■■□□ 16.2
NUP88-203ENST00000572019 POLA1P09884 1462 aaPredicted RBP35.75■■■■□ 3.31
NUP88-203ENST00000572019 RAD54L2Q9Y4B4 1467 aa35.68■■■■□ 3.3
NUP88-203ENST00000572019 CYB5RLQ6IPT4 315 aa35.64■■■■□ 3.3
NUP88-203ENST00000572019 ARAP1Q96P48 1450 aa35.6■■■■□ 3.29
NUP88-203ENST00000572019 FBLN2P98095 1184 aa35.58■■■■□ 3.29
NUP88-203ENST00000572019 TDRD9Q8NDG6 1382 aaKnown RBP35.56■■■■□ 3.28
NUP88-203ENST00000572019 SOGA1O94964 1423 aa35.53■■■■□ 3.28
NUP88-203ENST00000572019 FGD5Q6ZNL6 1462 aa35.49■■■■□ 3.27
NUP88-203ENST00000572019 CUX1P39880 1505 aa35.46■■■■□ 3.27
NUP88-203ENST00000572019 SNAPC4Q5SXM2 1469 aa35.45■■■■□ 3.27
NUP88-203ENST00000572019 CLASP1Q7Z460 1538 aa35.37■■■■□ 3.25
NUP88-203ENST00000572019 WDR97A6NE52 1622 aa35.33■■■■□ 3.25
NUP88-203ENST00000572019 TRHP20396 242 aaPredicted RBP35.29■■■■□ 3.24
NUP88-203ENST00000572019 MAGI1Q96QZ7 1491 aaPredicted RBP35.26■■■■□ 3.23
NUP88-203ENST00000572019 GRIN2BQ13224 1484 aa35.23■■■■□ 3.23
NUP88-203ENST00000572019 SYNJ1O43426 1573 aa35.23■■■■□ 3.23
NUP88-203ENST00000572019 PBRM1Q86U86 1689 aa35.22■■■■□ 3.23
NUP88-203ENST00000572019 CHMP7Q8WUX9 453 aaPredicted RBP35.22■■■■□ 3.23
NUP88-203ENST00000572019 SYNJ2O15056 1496 aa35.17■■■■□ 3.22
NUP88-203ENST00000572019 GAPVD1Q14C86 1478 aa35.1■■■■□ 3.21
NUP88-203ENST00000572019 ABCA5Q8WWZ7 1642 aa35.07■■■■□ 3.21
NUP88-203ENST00000572019 ABCA10Q8WWZ4 1543 aa35.02■■■■□ 3.2
NUP88-203ENST00000572019 ERCC6L2Q5T890 1561 aa34.91■■■■□ 3.18
NUP88-203ENST00000572019 SUPT5HO00267 1087 aaKnown RBP34.9■■■■□ 3.18
NUP88-203ENST00000572019 GRIN2AQ12879 1464 aa34.84■■■■□ 3.17
NUP88-203ENST00000572019 ADAMTS12P58397 1594 aa34.83■■■■□ 3.17
NUP88-203ENST00000572019 CEP170Q5SW79 1584 aa34.81■■■■□ 3.16
NUP88-203ENST00000572019 BIVM-ERCC5R4GMW8 1640 aa34.78■■■■□ 3.16
NUP88-203ENST00000572019 WRNQ14191 1432 aaPredicted RBP eCLIP34.76■■■■□ 3.16
NUP88-203ENST00000572019 TOP2BQ02880 1626 aa34.74■■■■□ 3.15
NUP88-203ENST00000572019 NUP160Q12769 1436 aa34.72■■■■□ 3.15
NUP88-203ENST00000572019 SHROOM2Q13796 1616 aa34.66■■■■□ 3.14
NUP88-203ENST00000572019 FHAD1B1AJZ9 1412 aa34.61■■■■□ 3.13
NUP88-203ENST00000572019 ERICH3Q5RHP9 1530 aa34.55■■■■□ 3.12
NUP88-203ENST00000572019 KIF13AQ9H1H9 1805 aa34.44■■■■□ 3.1
NUP88-203ENST00000572019 AEBP2Q6ZN18 517 aaPredicted RBP34.41■■■■□ 3.1
NUP88-203ENST00000572019 PRG4Q92954 1404 aaPredicted RBP34.4■■■■□ 3.1
NUP88-203ENST00000572019 RUSC2Q8N2Y8 1516 aa34.35■■■■□ 3.09
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms