RNA–Protein interactions for RNA: ENST00000571886.1

GTF3C1-213, Transcript of general transcription factor IIIC subunit 1, humanhuman

TSL 3

Gene GTF3C1, Length 721 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3C1-213ENST00000571886 NISCHQ9Y2I1 1504 aa25.1■■□□□ 1.61
GTF3C1-213ENST00000571886 CCDC180Q9P1Z9 1646 aa22.28■■□□□ 1.16
GTF3C1-213ENST00000571886 ABCC9O60706 1549 aa22.01■■□□□ 1.11
GTF3C1-213ENST00000571886 DCAF8L2P0C7V8 631 aa21.08■□□□□ 0.97
GTF3C1-213ENST00000571886 RB1CC1Q8TDY2 1594 aa21.04■□□□□ 0.96
GTF3C1-213ENST00000571886 NACADO15069 1562 aa20.99■□□□□ 0.95
GTF3C1-213ENST00000571886 ZCCHC6Q5VYS8 1495 aaKnown RBP20.87■□□□□ 0.93
GTF3C1-213ENST00000571886 MYO15BQ96JP2 1530 aa20.8■□□□□ 0.92
GTF3C1-213ENST00000571886 DCAF1Q9Y4B6 1507 aa20.69■□□□□ 0.9
GTF3C1-213ENST00000571886 UNC13AQ9UPW8 1703 aa20.67■□□□□ 0.9
GTF3C1-213ENST00000571886 PABPN1Q86U42 306 aaKnown RBP eCLIP20.6■□□□□ 0.89
GTF3C1-213ENST00000571886 BICRAQ9NZM4 1560 aa20.5■□□□□ 0.87
GTF3C1-213ENST00000571886 SCRIBQ14160 1630 aa20.41■□□□□ 0.86
GTF3C1-213ENST00000571886 DNAJC5BQ9UF47 199 aa20.4■□□□□ 0.86
GTF3C1-213ENST00000571886 SHROOM4Q9ULL8 1493 aa20.16■□□□□ 0.82
GTF3C1-213ENST00000571886 EIF4G1Q04637 1599 aaKnown RBP19.91■□□□□ 0.78
GTF3C1-213ENST00000571886 CC2D2AQ9P2K1 1620 aa19.88■□□□□ 0.77
GTF3C1-213ENST00000571886 CECR2Q9BXF3 1484 aa19.74■□□□□ 0.75
GTF3C1-213ENST00000571886 SMARCA4P51532 1647 aa19.49■□□□□ 0.71
GTF3C1-213ENST00000571886 ATAD2BQ9ULI0 1458 aa19.42■□□□□ 0.7
GTF3C1-213ENST00000571886 BAZ1AQ9NRL2 1556 aaPredicted RBP19.41■□□□□ 0.7
GTF3C1-213ENST00000571886 NCAPD3P42695 1498 aa19.4■□□□□ 0.7
GTF3C1-213ENST00000571886 MROH2BQ7Z745 1585 aa19.39■□□□□ 0.69
GTF3C1-213ENST00000571886 SMARCA2P51531 1590 aa19.32■□□□□ 0.68
GTF3C1-213ENST00000571886 PEG3Q9GZU2 1588 aa19.27■□□□□ 0.67
GTF3C1-213ENST00000571886 HMGXB3Q12766 1538 aa19.25■□□□□ 0.67
GTF3C1-213ENST00000571886 BAZ1BQ9UIG0 1483 aaKnown RBP19.22■□□□□ 0.67
GTF3C1-213ENST00000571886 WIZO95785 1651 aa19.18■□□□□ 0.66
GTF3C1-213ENST00000571886 RSF1Q96T23 1441 aaPredicted RBP19.11■□□□□ 0.65
GTF3C1-213ENST00000571886 NESP48681 1621 aa19.04■□□□□ 0.64
GTF3C1-213ENST00000571886 ERCC6Q03468 1493 aa18.9■□□□□ 0.62
GTF3C1-213ENST00000571886 TOP2AP11388 1531 aaKnown RBP18.9■□□□□ 0.62
GTF3C1-213ENST00000571886 LAMC3Q9Y6N6 1575 aa18.87■□□□□ 0.61
GTF3C1-213ENST00000571886 CADPSQ9ULU8 1353 aa18.84■□□□□ 0.61
GTF3C1-213ENST00000571886 KIF21AQ7Z4S6 1674 aa18.78■□□□□ 0.6
GTF3C1-213ENST00000571886 PDS5BQ9NTI5 1447 aa18.75■□□□□ 0.59
GTF3C1-213ENST00000571886 CCDC88BA6NC98 1476 aa18.73■□□□□ 0.59
GTF3C1-213ENST00000571886 CUX2O14529 1486 aa18.71■□□□□ 0.59
GTF3C1-213ENST00000571886 THOC2Q8NI27 1593 aaKnown RBP18.71■□□□□ 0.59
GTF3C1-213ENST00000571886 CFTRP13569 1480 aa18.71■□□□□ 0.59
GTF3C1-213ENST00000571886 FANCD2Q9BXW9 1451 aa18.62■□□□□ 0.57
GTF3C1-213ENST00000571886 SUPT5HO00267 1087 aaKnown RBP18.6■□□□□ 0.57
GTF3C1-213ENST00000571886 CEP164Q9UPV0 1460 aa18.58■□□□□ 0.57
GTF3C1-213ENST00000571886 MRC2Q9UBG0 1479 aa18.58■□□□□ 0.56
GTF3C1-213ENST00000571886 PRDM2Q13029 1718 aa18.53■□□□□ 0.56
GTF3C1-213ENST00000571886 WDR62O43379 1518 aa18.52■□□□□ 0.56
GTF3C1-213ENST00000571886 URB2Q14146 1524 aaKnown RBP18.48■□□□□ 0.55
GTF3C1-213ENST00000571886 DNAJC5Q9H3Z4 198 aa18.35■□□□□ 0.53
GTF3C1-213ENST00000571886 TOPBP1Q92547 1522 aa18.33■□□□□ 0.52
GTF3C1-213ENST00000571886 DNMBPQ6XZF7 1577 aa18.26■□□□□ 0.51
GTF3C1-213ENST00000571886 ABCC8Q09428 1581 aa18.24■□□□□ 0.51
GTF3C1-213ENST00000571886 ZNF608Q9ULD9 1512 aaPredicted RBP18.21■□□□□ 0.51
GTF3C1-213ENST00000571886 IFT140Q96RY7 1462 aa18.19■□□□□ 0.5
GTF3C1-213ENST00000571886 CUX1P39880 1505 aa18.18■□□□□ 0.5
GTF3C1-213ENST00000571886 POLA1P09884 1462 aaPredicted RBP18.16■□□□□ 0.5
GTF3C1-213ENST00000571886 TARBP1Q13395 1621 aaKnown RBP18.14■□□□□ 0.49
GTF3C1-213ENST00000571886 RAD54L2Q9Y4B4 1467 aa18.14■□□□□ 0.49
GTF3C1-213ENST00000571886 FGD5Q6ZNL6 1462 aa18.11■□□□□ 0.49
GTF3C1-213ENST00000571886 AQRO60306 1485 aaKnown RBP eCLIP18.09■□□□□ 0.495e-9■■■■■ 30.7
GTF3C1-213ENST00000571886 SOGA1O94964 1423 aa18.09■□□□□ 0.49
GTF3C1-213ENST00000571886 EIF4G3O43432 1585 aaKnown RBP18.07■□□□□ 0.48
GTF3C1-213ENST00000571886 TDRD9Q8NDG6 1382 aaKnown RBP18.04■□□□□ 0.48
GTF3C1-213ENST00000571886 OSCARQ8IYS5 282 aa17.99■□□□□ 0.47
GTF3C1-213ENST00000571886 WRNQ14191 1432 aaPredicted RBP eCLIP17.98■□□□□ 0.47
GTF3C1-213ENST00000571886 SYNJ1O43426 1573 aa17.98■□□□□ 0.47
GTF3C1-213ENST00000571886 WDR97A6NE52 1622 aa17.95■□□□□ 0.46
GTF3C1-213ENST00000571886 TOP2BQ02880 1626 aa17.95■□□□□ 0.46
GTF3C1-213ENST00000571886 BIVM-ERCC5R4GMW8 1640 aa17.95■□□□□ 0.46
GTF3C1-213ENST00000571886 ABCA10Q8WWZ4 1543 aa17.9■□□□□ 0.46
GTF3C1-213ENST00000571886 CHD1O14646 1710 aa17.89■□□□□ 0.46
GTF3C1-213ENST00000571886 SNAPC4Q5SXM2 1469 aa17.88■□□□□ 0.45
GTF3C1-213ENST00000571886 FBLN2P98095 1184 aa17.88■□□□□ 0.45
GTF3C1-213ENST00000571886 GAPVD1Q14C86 1478 aa17.87■□□□□ 0.45
GTF3C1-213ENST00000571886 GRIN2BQ13224 1484 aa17.86■□□□□ 0.45
GTF3C1-213ENST00000571886 ABCA5Q8WWZ7 1642 aa17.85■□□□□ 0.45
GTF3C1-213ENST00000571886 PBRM1Q86U86 1689 aa17.83■□□□□ 0.45
GTF3C1-213ENST00000571886 MAGI1Q96QZ7 1491 aaPredicted RBP17.8■□□□□ 0.44
GTF3C1-213ENST00000571886 CHMP7Q8WUX9 453 aaPredicted RBP17.78■□□□□ 0.44
GTF3C1-213ENST00000571886 SYNJ2O15056 1496 aa17.75■□□□□ 0.43
GTF3C1-213ENST00000571886 TRIM41Q8WV44 630 aa17.73■□□□□ 0.43
GTF3C1-213ENST00000571886 RIMBP3CA6NJZ7 1639 aa17.72■□□□□ 0.43
GTF3C1-213ENST00000571886 RIMBP3BA6NNM3 1639 aa17.72■□□□□ 0.43
GTF3C1-213ENST00000571886 RIMBP3Q9UFD9 1639 aa17.72■□□□□ 0.43
GTF3C1-213ENST00000571886 ARHGEF11O15085 1522 aa17.69■□□□□ 0.42
GTF3C1-213ENST00000571886 ADAMTS12P58397 1594 aa17.67■□□□□ 0.42
GTF3C1-213ENST00000571886 ERICH3Q5RHP9 1530 aa17.67■□□□□ 0.42
GTF3C1-213ENST00000571886 CLASP1Q7Z460 1538 aa17.67■□□□□ 0.42
GTF3C1-213ENST00000571886 FHAD1B1AJZ9 1412 aa17.64■□□□□ 0.42
GTF3C1-213ENST00000571886 GRIN2AQ12879 1464 aa17.63■□□□□ 0.41
GTF3C1-213ENST00000571886 IGF1RP08069 1367 aa17.6■□□□□ 0.41
GTF3C1-213ENST00000571886 CEP170Q5SW79 1584 aa17.59■□□□□ 0.41
GTF3C1-213ENST00000571886 KIF27Q86VH2 1401 aa17.59■□□□□ 0.41
GTF3C1-213ENST00000571886 CYB5RLQ6IPT4 315 aa17.58■□□□□ 0.4
GTF3C1-213ENST00000571886 NUP160Q12769 1436 aa17.57■□□□□ 0.4
GTF3C1-213ENST00000571886 ARAP1Q96P48 1450 aa17.56■□□□□ 0.4
GTF3C1-213ENST00000571886 RUSC2Q8N2Y8 1516 aa17.54■□□□□ 0.4
GTF3C1-213ENST00000571886 ERCC6L2Q5T890 1561 aa17.5■□□□□ 0.39
GTF3C1-213ENST00000571886 CARMIL1Q5VZK9 1371 aa17.48■□□□□ 0.39
GTF3C1-213ENST00000571886 CUL7Q14999 1698 aa17.47■□□□□ 0.39
GTF3C1-213ENST00000571886 SHROOM2Q13796 1616 aa17.44■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 180.7 ms