RNA–Protein interactions for RNA: ENST00000571627.5

LITAF-208, Transcript of lipopolysaccharide induced TNF factor, humanhuman

TSL 4

Gene LITAF, Length 579 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LITAF-208ENST00000571627 NISCHQ9Y2I1 1504 aa35.78■■■■□ 3.32
LITAF-208ENST00000571627 CCDC180Q9P1Z9 1646 aa31.93■■■□□ 2.7
LITAF-208ENST00000571627 ABCC9O60706 1549 aa31.45■■■□□ 2.63
LITAF-208ENST00000571627 RB1CC1Q8TDY2 1594 aa30.12■■■□□ 2.41
LITAF-208ENST00000571627 NACADO15069 1562 aa30.02■■■□□ 2.4
LITAF-208ENST00000571627 DCAF8L2P0C7V8 631 aa29.98■■■□□ 2.39
LITAF-208ENST00000571627 ZCCHC6Q5VYS8 1495 aaKnown RBP29.77■■■□□ 2.36
LITAF-208ENST00000571627 MYO15BQ96JP2 1530 aa29.72■■■□□ 2.35
LITAF-208ENST00000571627 UNC13AQ9UPW8 1703 aa29.57■■■□□ 2.32
LITAF-208ENST00000571627 DCAF1Q9Y4B6 1507 aa29.55■■■□□ 2.32
LITAF-208ENST00000571627 PABPN1Q86U42 306 aaKnown RBP eCLIP29.34■■■□□ 2.29
LITAF-208ENST00000571627 BICRAQ9NZM4 1560 aa29.27■■■□□ 2.28
LITAF-208ENST00000571627 SCRIBQ14160 1630 aa29.16■■■□□ 2.26
LITAF-208ENST00000571627 DNAJC5BQ9UF47 199 aa29.03■■■□□ 2.24
LITAF-208ENST00000571627 SHROOM4Q9ULL8 1493 aa28.83■■■□□ 2.21
LITAF-208ENST00000571627 EIF4G1Q04637 1599 aaKnown RBP28.5■■■□□ 2.15
LITAF-208ENST00000571627 CC2D2AQ9P2K1 1620 aa28.44■■■□□ 2.14
LITAF-208ENST00000571627 CECR2Q9BXF3 1484 aa28.25■■■□□ 2.11
LITAF-208ENST00000571627 SMARCA4P51532 1647 aa27.85■■■□□ 2.05
LITAF-208ENST00000571627 BAZ1AQ9NRL2 1556 aaPredicted RBP27.73■■■□□ 2.03
LITAF-208ENST00000571627 ATAD2BQ9ULI0 1458 aa27.7■■■□□ 2.02
LITAF-208ENST00000571627 NCAPD3P42695 1498 aa27.68■■■□□ 2.02
LITAF-208ENST00000571627 SMARCA2P51531 1590 aa27.65■■■□□ 2.02
LITAF-208ENST00000571627 MROH2BQ7Z745 1585 aa27.6■■■□□ 2.01
LITAF-208ENST00000571627 HMGXB3Q12766 1538 aa27.57■■■□□ 2
LITAF-208ENST00000571627 PEG3Q9GZU2 1588 aa27.52■■■□□ 2
LITAF-208ENST00000571627 BAZ1BQ9UIG0 1483 aaKnown RBP27.48■■□□□ 1.99
LITAF-208ENST00000571627 WIZO95785 1651 aa27.33■■□□□ 1.97
LITAF-208ENST00000571627 NESP48681 1621 aa27.18■■□□□ 1.94
LITAF-208ENST00000571627 RSF1Q96T23 1441 aaPredicted RBP27.17■■□□□ 1.94
LITAF-208ENST00000571627 ERCC6Q03468 1493 aa27.1■■□□□ 1.93
LITAF-208ENST00000571627 LAMC3Q9Y6N6 1575 aa27.02■■□□□ 1.92
LITAF-208ENST00000571627 TOP2AP11388 1531 aaKnown RBP26.98■■□□□ 1.91
LITAF-208ENST00000571627 KIF21AQ7Z4S6 1674 aa26.89■■□□□ 1.9
LITAF-208ENST00000571627 CADPSQ9ULU8 1353 aa26.86■■□□□ 1.89
LITAF-208ENST00000571627 CUX2O14529 1486 aa26.85■■□□□ 1.89
LITAF-208ENST00000571627 THOC2Q8NI27 1593 aaKnown RBP26.81■■□□□ 1.88
LITAF-208ENST00000571627 PDS5BQ9NTI5 1447 aa26.81■■□□□ 1.88
LITAF-208ENST00000571627 CFTRP13569 1480 aa26.68■■□□□ 1.86
LITAF-208ENST00000571627 CCDC88BA6NC98 1476 aa26.65■■□□□ 1.86
LITAF-208ENST00000571627 FANCD2Q9BXW9 1451 aa26.6■■□□□ 1.85
LITAF-208ENST00000571627 MRC2Q9UBG0 1479 aa26.59■■□□□ 1.85
LITAF-208ENST00000571627 CEP164Q9UPV0 1460 aa26.59■■□□□ 1.85
LITAF-208ENST00000571627 PRDM2Q13029 1718 aa26.56■■□□□ 1.84
LITAF-208ENST00000571627 WDR62O43379 1518 aa26.52■■□□□ 1.84
LITAF-208ENST00000571627 URB2Q14146 1524 aaKnown RBP26.37■■□□□ 1.81
LITAF-208ENST00000571627 SUPT5HO00267 1087 aaKnown RBP26.35■■□□□ 1.81
LITAF-208ENST00000571627 DNAJC5Q9H3Z4 198 aa26.24■■□□□ 1.79
LITAF-208ENST00000571627 TOPBP1Q92547 1522 aa26.16■■□□□ 1.78
LITAF-208ENST00000571627 DNMBPQ6XZF7 1577 aa26.12■■□□□ 1.77
LITAF-208ENST00000571627 ABCC8Q09428 1581 aa26.07■■□□□ 1.76
LITAF-208ENST00000571627 IFT140Q96RY7 1462 aa26.01■■□□□ 1.75
LITAF-208ENST00000571627 ZNF608Q9ULD9 1512 aaPredicted RBP25.97■■□□□ 1.75
LITAF-208ENST00000571627 POLA1P09884 1462 aaPredicted RBP25.92■■□□□ 1.74
LITAF-208ENST00000571627 CUX1P39880 1505 aa25.92■■□□□ 1.74
LITAF-208ENST00000571627 TARBP1Q13395 1621 aaKnown RBP25.92■■□□□ 1.74
LITAF-208ENST00000571627 EIF4G3O43432 1585 aaKnown RBP25.88■■□□□ 1.73
LITAF-208ENST00000571627 FGD5Q6ZNL6 1462 aa25.85■■□□□ 1.73
LITAF-208ENST00000571627 RAD54L2Q9Y4B4 1467 aa25.84■■□□□ 1.73
LITAF-208ENST00000571627 SOGA1O94964 1423 aa25.79■■□□□ 1.72
LITAF-208ENST00000571627 AQRO60306 1485 aaKnown RBP eCLIP25.78■■□□□ 1.722e-8■■■□□ 18.1
LITAF-208ENST00000571627 WDR97A6NE52 1622 aa25.69■■□□□ 1.7
LITAF-208ENST00000571627 TDRD9Q8NDG6 1382 aaKnown RBP25.69■■□□□ 1.7
LITAF-208ENST00000571627 OSCARQ8IYS5 282 aa25.66■■□□□ 1.7
LITAF-208ENST00000571627 SYNJ1O43426 1573 aa25.65■■□□□ 1.7
LITAF-208ENST00000571627 BIVM-ERCC5R4GMW8 1640 aa25.64■■□□□ 1.7
LITAF-208ENST00000571627 CHD1O14646 1710 aa25.63■■□□□ 1.69
LITAF-208ENST00000571627 WRNQ14191 1432 aaPredicted RBP eCLIP25.63■■□□□ 1.69
LITAF-208ENST00000571627 TOP2BQ02880 1626 aa25.62■■□□□ 1.69
LITAF-208ENST00000571627 ABCA10Q8WWZ4 1543 aa25.55■■□□□ 1.68
LITAF-208ENST00000571627 PBRM1Q86U86 1689 aa25.55■■□□□ 1.68
LITAF-208ENST00000571627 SNAPC4Q5SXM2 1469 aa25.54■■□□□ 1.68
LITAF-208ENST00000571627 ABCA5Q8WWZ7 1642 aa25.52■■□□□ 1.68
LITAF-208ENST00000571627 GRIN2BQ13224 1484 aa25.51■■□□□ 1.67
LITAF-208ENST00000571627 GAPVD1Q14C86 1478 aa25.5■■□□□ 1.67
LITAF-208ENST00000571627 FBLN2P98095 1184 aa25.49■■□□□ 1.67
LITAF-208ENST00000571627 MAGI1Q96QZ7 1491 aaPredicted RBP25.47■■□□□ 1.67
LITAF-208ENST00000571627 RIMBP3CA6NJZ7 1639 aa25.39■■□□□ 1.66
LITAF-208ENST00000571627 RIMBP3BA6NNM3 1639 aa25.39■■□□□ 1.66
LITAF-208ENST00000571627 RIMBP3Q9UFD9 1639 aa25.39■■□□□ 1.66
LITAF-208ENST00000571627 SYNJ2O15056 1496 aa25.37■■□□□ 1.65
LITAF-208ENST00000571627 TRIM41Q8WV44 630 aa25.37■■□□□ 1.65
LITAF-208ENST00000571627 CHMP7Q8WUX9 453 aaPredicted RBP25.35■■□□□ 1.65
LITAF-208ENST00000571627 ARHGEF11O15085 1522 aa25.33■■□□□ 1.65
LITAF-208ENST00000571627 ADAMTS12P58397 1594 aa25.3■■□□□ 1.64
LITAF-208ENST00000571627 CLASP1Q7Z460 1538 aa25.29■■□□□ 1.64
LITAF-208ENST00000571627 ERICH3Q5RHP9 1530 aa25.23■■□□□ 1.63
LITAF-208ENST00000571627 GRIN2AQ12879 1464 aa25.21■■□□□ 1.63
LITAF-208ENST00000571627 FHAD1B1AJZ9 1412 aa25.17■■□□□ 1.62
LITAF-208ENST00000571627 CEP170Q5SW79 1584 aa25.13■■□□□ 1.61
LITAF-208ENST00000571627 ARAP1Q96P48 1450 aa25.12■■□□□ 1.61
LITAF-208ENST00000571627 KIF27Q86VH2 1401 aa25.09■■□□□ 1.61
LITAF-208ENST00000571627 NUP160Q12769 1436 aa25.08■■□□□ 1.61
LITAF-208ENST00000571627 CYB5RLQ6IPT4 315 aa25.07■■□□□ 1.6
LITAF-208ENST00000571627 IGF1RP08069 1367 aa25.01■■□□□ 1.59
LITAF-208ENST00000571627 CUL7Q14999 1698 aa25.01■■□□□ 1.59
LITAF-208ENST00000571627 ERCC6L2Q5T890 1561 aa24.97■■□□□ 1.59
LITAF-208ENST00000571627 SHROOM2Q13796 1616 aa24.96■■□□□ 1.59
LITAF-208ENST00000571627 RUSC2Q8N2Y8 1516 aa24.93■■□□□ 1.58
LITAF-208ENST00000571627 CARMIL1Q5VZK9 1371 aa24.86■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms