RNA–Protein interactions for RNA: ENST00000571277.1

LITAF-206, Transcript of lipopolysaccharide induced TNF factor, humanhuman

TSL 4

Gene LITAF, Length 587 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LITAF-206ENST00000571277 NISCHQ9Y2I1 1504 aa28.46■■■□□ 2.15
LITAF-206ENST00000571277 CCDC180Q9P1Z9 1646 aa25.49■■□□□ 1.67
LITAF-206ENST00000571277 ABCC9O60706 1549 aa25.32■■□□□ 1.64
LITAF-206ENST00000571277 RB1CC1Q8TDY2 1594 aa24.16■■□□□ 1.46
LITAF-206ENST00000571277 NACADO15069 1562 aa24.05■■□□□ 1.44
LITAF-206ENST00000571277 DCAF8L2P0C7V8 631 aa23.84■■□□□ 1.41
LITAF-206ENST00000571277 MYO15BQ96JP2 1530 aa23.79■■□□□ 1.4
LITAF-206ENST00000571277 UNC13AQ9UPW8 1703 aa23.68■■□□□ 1.38
LITAF-206ENST00000571277 DNAJC5BQ9UF47 199 aa23.67■■□□□ 1.38
LITAF-206ENST00000571277 ZCCHC6Q5VYS8 1495 aaKnown RBP23.62■■□□□ 1.37
LITAF-206ENST00000571277 PABPN1Q86U42 306 aaKnown RBP eCLIP23.57■■□□□ 1.36
LITAF-206ENST00000571277 DCAF1Q9Y4B6 1507 aa23.54■■□□□ 1.36
LITAF-206ENST00000571277 BICRAQ9NZM4 1560 aa23.52■■□□□ 1.36
LITAF-206ENST00000571277 SCRIBQ14160 1630 aa23.21■■□□□ 1.31
LITAF-206ENST00000571277 SHROOM4Q9ULL8 1493 aa23.17■■□□□ 1.3
LITAF-206ENST00000571277 CC2D2AQ9P2K1 1620 aa22.9■■□□□ 1.26
LITAF-206ENST00000571277 EIF4G1Q04637 1599 aaKnown RBP22.89■■□□□ 1.26
LITAF-206ENST00000571277 CECR2Q9BXF3 1484 aa22.79■■□□□ 1.24
LITAF-206ENST00000571277 NCAPD3P42695 1498 aa22.22■■□□□ 1.15
LITAF-206ENST00000571277 SMARCA4P51532 1647 aa22.17■■□□□ 1.14
LITAF-206ENST00000571277 ATAD2BQ9ULI0 1458 aa22.15■■□□□ 1.14
LITAF-206ENST00000571277 SMARCA2P51531 1590 aa22.08■■□□□ 1.13
LITAF-206ENST00000571277 BAZ1AQ9NRL2 1556 aaPredicted RBP22.07■■□□□ 1.12
LITAF-206ENST00000571277 HMGXB3Q12766 1538 aa22.06■■□□□ 1.12
LITAF-206ENST00000571277 PEG3Q9GZU2 1588 aa21.99■■□□□ 1.11
LITAF-206ENST00000571277 MROH2BQ7Z745 1585 aa21.94■■□□□ 1.1
LITAF-206ENST00000571277 BAZ1BQ9UIG0 1483 aaKnown RBP21.92■■□□□ 1.1
LITAF-206ENST00000571277 NESP48681 1621 aa21.82■■□□□ 1.08
LITAF-206ENST00000571277 ERCC6Q03468 1493 aa21.82■■□□□ 1.08
LITAF-206ENST00000571277 CUX2O14529 1486 aa21.77■■□□□ 1.08
LITAF-206ENST00000571277 LAMC3Q9Y6N6 1575 aa21.68■■□□□ 1.06
LITAF-206ENST00000571277 WIZO95785 1651 aa21.68■■□□□ 1.06
LITAF-206ENST00000571277 DNAJC5Q9H3Z4 198 aa21.61■■□□□ 1.05
LITAF-206ENST00000571277 THOC2Q8NI27 1593 aaKnown RBP21.59■■□□□ 1.05
LITAF-206ENST00000571277 KIF21AQ7Z4S6 1674 aa21.55■■□□□ 1.04
LITAF-206ENST00000571277 RSF1Q96T23 1441 aaPredicted RBP21.53■■□□□ 1.04
LITAF-206ENST00000571277 CADPSQ9ULU8 1353 aa21.51■■□□□ 1.03
LITAF-206ENST00000571277 PDS5BQ9NTI5 1447 aa21.51■■□□□ 1.03
LITAF-206ENST00000571277 TOP2AP11388 1531 aaKnown RBP21.4■■□□□ 1.02
LITAF-206ENST00000571277 MRC2Q9UBG0 1479 aa21.34■■□□□ 1.01
LITAF-206ENST00000571277 CFTRP13569 1480 aa21.32■■□□□ 1
LITAF-206ENST00000571277 WDR62O43379 1518 aa21.31■■□□□ 1
LITAF-206ENST00000571277 FANCD2Q9BXW9 1451 aa21.27■■□□□ 1
LITAF-206ENST00000571277 CEP164Q9UPV0 1460 aa21.27■■□□□ 1
LITAF-206ENST00000571277 CCDC88BA6NC98 1476 aa21.16■□□□□ 0.98
LITAF-206ENST00000571277 PRDM2Q13029 1718 aa21.13■□□□□ 0.97
LITAF-206ENST00000571277 URB2Q14146 1524 aaKnown RBP21.12■□□□□ 0.97
LITAF-206ENST00000571277 TOPBP1Q92547 1522 aa20.9■□□□□ 0.94
LITAF-206ENST00000571277 IFT140Q96RY7 1462 aa20.85■□□□□ 0.93
LITAF-206ENST00000571277 ABCC8Q09428 1581 aa20.83■□□□□ 0.92
LITAF-206ENST00000571277 DNMBPQ6XZF7 1577 aa20.83■□□□□ 0.92
LITAF-206ENST00000571277 ZNF608Q9ULD9 1512 aaPredicted RBP20.83■□□□□ 0.92
LITAF-206ENST00000571277 OSCARQ8IYS5 282 aa20.76■□□□□ 0.91
LITAF-206ENST00000571277 TARBP1Q13395 1621 aaKnown RBP20.74■□□□□ 0.91
LITAF-206ENST00000571277 EIF4G3O43432 1585 aaKnown RBP20.72■□□□□ 0.91
LITAF-206ENST00000571277 POLA1P09884 1462 aaPredicted RBP20.7■□□□□ 0.9
LITAF-206ENST00000571277 TRIM41Q8WV44 630 aa20.64■□□□□ 0.89
LITAF-206ENST00000571277 AQRO60306 1485 aaKnown RBP eCLIP20.63■□□□□ 0.89
LITAF-206ENST00000571277 RAD54L2Q9Y4B4 1467 aa20.61■□□□□ 0.89
LITAF-206ENST00000571277 CUX1P39880 1505 aa20.6■□□□□ 0.89
LITAF-206ENST00000571277 SUPT5HO00267 1087 aaKnown RBP20.59■□□□□ 0.89
LITAF-206ENST00000571277 FGD5Q6ZNL6 1462 aa20.58■□□□□ 0.89
LITAF-206ENST00000571277 SOGA1O94964 1423 aa20.57■□□□□ 0.88
LITAF-206ENST00000571277 CHD1O14646 1710 aa20.54■□□□□ 0.88
LITAF-206ENST00000571277 RIMBP3CA6NJZ7 1639 aa20.53■□□□□ 0.88
LITAF-206ENST00000571277 RIMBP3BA6NNM3 1639 aa20.53■□□□□ 0.88
LITAF-206ENST00000571277 RIMBP3Q9UFD9 1639 aa20.53■□□□□ 0.88
LITAF-206ENST00000571277 TDRD9Q8NDG6 1382 aaKnown RBP20.52■□□□□ 0.88
LITAF-206ENST00000571277 WDR97A6NE52 1622 aa20.5■□□□□ 0.87
LITAF-206ENST00000571277 ARHGEF11O15085 1522 aa20.48■□□□□ 0.87
LITAF-206ENST00000571277 SNAPC4Q5SXM2 1469 aa20.43■□□□□ 0.86
LITAF-206ENST00000571277 FBLN2P98095 1184 aa20.4■□□□□ 0.86
LITAF-206ENST00000571277 GRIN2BQ13224 1484 aa20.39■□□□□ 0.85
LITAF-206ENST00000571277 MAGI1Q96QZ7 1491 aaPredicted RBP20.38■□□□□ 0.85
LITAF-206ENST00000571277 ABCA10Q8WWZ4 1543 aa20.36■□□□□ 0.85
LITAF-206ENST00000571277 GAPVD1Q14C86 1478 aa20.34■□□□□ 0.85
LITAF-206ENST00000571277 PBRM1Q86U86 1689 aa20.34■□□□□ 0.85
LITAF-206ENST00000571277 ABCA5Q8WWZ7 1642 aa20.34■□□□□ 0.85
LITAF-206ENST00000571277 CLASP1Q7Z460 1538 aa20.32■□□□□ 0.84
LITAF-206ENST00000571277 BIVM-ERCC5R4GMW8 1640 aa20.32■□□□□ 0.84
LITAF-206ENST00000571277 SYNJ2O15056 1496 aa20.31■□□□□ 0.84
LITAF-206ENST00000571277 TOP2BQ02880 1626 aa20.31■□□□□ 0.84
LITAF-206ENST00000571277 ARAP1Q96P48 1450 aa20.3■□□□□ 0.84
LITAF-206ENST00000571277 SYNJ1O43426 1573 aa20.29■□□□□ 0.84
LITAF-206ENST00000571277 CHMP7Q8WUX9 453 aaPredicted RBP20.29■□□□□ 0.84
LITAF-206ENST00000571277 WRNQ14191 1432 aaPredicted RBP eCLIP20.27■□□□□ 0.84
LITAF-206ENST00000571277 CYB5RLQ6IPT4 315 aa20.27■□□□□ 0.84
LITAF-206ENST00000571277 ADAMTS12P58397 1594 aa20.16■□□□□ 0.82
LITAF-206ENST00000571277 GRIN2AQ12879 1464 aa20.14■□□□□ 0.81
LITAF-206ENST00000571277 ERICH3Q5RHP9 1530 aa20.11■□□□□ 0.81
LITAF-206ENST00000571277 FHAD1B1AJZ9 1412 aa20.09■□□□□ 0.81
LITAF-206ENST00000571277 NUP160Q12769 1436 aa20.09■□□□□ 0.81
LITAF-206ENST00000571277 CEP170Q5SW79 1584 aa20.08■□□□□ 0.81
LITAF-206ENST00000571277 ERCC6L2Q5T890 1561 aa20.02■□□□□ 0.8
LITAF-206ENST00000571277 SHROOM2Q13796 1616 aa20■□□□□ 0.79
LITAF-206ENST00000571277 TRHP20396 242 aaPredicted RBP19.95■□□□□ 0.78
LITAF-206ENST00000571277 RUSC2Q8N2Y8 1516 aa19.88■□□□□ 0.77
LITAF-206ENST00000571277 IGF1RP08069 1367 aa19.88■□□□□ 0.77
LITAF-206ENST00000571277 KIF27Q86VH2 1401 aa19.86■□□□□ 0.77
LITAF-206ENST00000571277 PRG4Q92954 1404 aaPredicted RBP19.85■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 358.3 ms