RNA–Protein interactions for RNA: ENST00000571263.2

CDRT1-206, CMT1A duplicated region transcript 1, humanhuman

TSL 1 (best)

Gene CDRT1, Length 800 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDRT1-206ENST00000571263 NISCHQ9Y2I1 1504 aa27.65■■■□□ 2.02
CDRT1-206ENST00000571263 CCDC180Q9P1Z9 1646 aa24.33■■□□□ 1.49
CDRT1-206ENST00000571263 ABCC9O60706 1549 aa23.16■■□□□ 1.3
CDRT1-206ENST00000571263 ZCCHC6Q5VYS8 1495 aaKnown RBP23.14■■□□□ 1.29
CDRT1-206ENST00000571263 DCAF1Q9Y4B6 1507 aa22.98■■□□□ 1.27
CDRT1-206ENST00000571263 MYO15BQ96JP2 1530 aa22.87■■□□□ 1.25
CDRT1-206ENST00000571263 DCAF8L2P0C7V8 631 aa22.87■■□□□ 1.25
CDRT1-206ENST00000571263 NACADO15069 1562 aa22.78■■□□□ 1.24
CDRT1-206ENST00000571263 RB1CC1Q8TDY2 1594 aa22.63■■□□□ 1.21
CDRT1-206ENST00000571263 SCRIBQ14160 1630 aa22.16■■□□□ 1.14
CDRT1-206ENST00000571263 SHROOM4Q9ULL8 1493 aa22.11■■□□□ 1.13
CDRT1-206ENST00000571263 UNC13AQ9UPW8 1703 aa21.99■■□□□ 1.11
CDRT1-206ENST00000571263 BICRAQ9NZM4 1560 aa21.82■■□□□ 1.08
CDRT1-206ENST00000571263 PABPN1Q86U42 306 aaKnown RBP eCLIP21.75■■□□□ 1.07
CDRT1-206ENST00000571263 BAZ1AQ9NRL2 1556 aaPredicted RBP21.42■■□□□ 1.02
CDRT1-206ENST00000571263 CECR2Q9BXF3 1484 aa21.39■■□□□ 1.02
CDRT1-206ENST00000571263 SMARCA4P51532 1647 aa21.29■■□□□ 1
CDRT1-206ENST00000571263 RSF1Q96T23 1441 aaPredicted RBP21.28■■□□□ 1
CDRT1-206ENST00000571263 MROH2BQ7Z745 1585 aa21.26■□□□□ 0.99
CDRT1-206ENST00000571263 EIF4G1Q04637 1599 aaKnown RBP21.24■□□□□ 0.99
CDRT1-206ENST00000571263 SUPT5HO00267 1087 aaKnown RBP21.19■□□□□ 0.98
CDRT1-206ENST00000571263 PEG3Q9GZU2 1588 aa21.13■□□□□ 0.97
CDRT1-206ENST00000571263 SMARCA2P51531 1590 aa21.11■□□□□ 0.97
CDRT1-206ENST00000571263 ATAD2BQ9ULI0 1458 aa21.06■□□□□ 0.96
CDRT1-206ENST00000571263 WIZO95785 1651 aa21.05■□□□□ 0.96
CDRT1-206ENST00000571263 NCAPD3P42695 1498 aa21.01■□□□□ 0.95
CDRT1-206ENST00000571263 CC2D2AQ9P2K1 1620 aa20.99■□□□□ 0.95
CDRT1-206ENST00000571263 BAZ1BQ9UIG0 1483 aaKnown RBP20.93■□□□□ 0.94
CDRT1-206ENST00000571263 TOP2AP11388 1531 aaKnown RBP20.93■□□□□ 0.94
CDRT1-206ENST00000571263 HMGXB3Q12766 1538 aa20.93■□□□□ 0.94
CDRT1-206ENST00000571263 DNAJC5BQ9UF47 199 aa20.68■□□□□ 0.9
CDRT1-206ENST00000571263 CCDC88BA6NC98 1476 aa20.67■□□□□ 0.9
CDRT1-206ENST00000571263 CADPSQ9ULU8 1353 aa20.42■□□□□ 0.86
CDRT1-206ENST00000571263 CFTRP13569 1480 aa20.41■□□□□ 0.86
CDRT1-206ENST00000571263 LAMC3Q9Y6N6 1575 aa20.34■□□□□ 0.85
CDRT1-206ENST00000571263 PRDM2Q13029 1718 aa20.25■□□□□ 0.83
CDRT1-206ENST00000571263 PDS5BQ9NTI5 1447 aa20.22■□□□□ 0.83
CDRT1-206ENST00000571263 NESP48681 1621 aa20.18■□□□□ 0.82
CDRT1-206ENST00000571263 CHIC1Q5VXU3 224 aa20.15■□□□□ 0.82
CDRT1-206ENST00000571263 FANCD2Q9BXW9 1451 aa20.14■□□□□ 0.81
CDRT1-206ENST00000571263 WRNQ14191 1432 aaPredicted RBP eCLIP20.08■□□□□ 0.8
CDRT1-206ENST00000571263 CEP164Q9UPV0 1460 aa20.07■□□□□ 0.8
CDRT1-206ENST00000571263 TRIM41Q8WV44 630 aa20.07■□□□□ 0.8
CDRT1-206ENST00000571263 ABCC8Q09428 1581 aa20.04■□□□□ 0.8
CDRT1-206ENST00000571263 ERCC6Q03468 1493 aa19.98■□□□□ 0.79
CDRT1-206ENST00000571263 KIF21AQ7Z4S6 1674 aa19.97■□□□□ 0.79
CDRT1-206ENST00000571263 TOP2BQ02880 1626 aa19.94■□□□□ 0.78
CDRT1-206ENST00000571263 BIVM-ERCC5R4GMW8 1640 aa19.93■□□□□ 0.78
CDRT1-206ENST00000571263 DNMBPQ6XZF7 1577 aa19.92■□□□□ 0.78
CDRT1-206ENST00000571263 MRC2Q9UBG0 1479 aa19.92■□□□□ 0.78
CDRT1-206ENST00000571263 CUX1P39880 1505 aa19.92■□□□□ 0.78
CDRT1-206ENST00000571263 SYNJ1O43426 1573 aa19.91■□□□□ 0.78
CDRT1-206ENST00000571263 TOPBP1Q92547 1522 aa19.87■□□□□ 0.77
CDRT1-206ENST00000571263 URB2Q14146 1524 aaKnown RBP19.86■□□□□ 0.77
CDRT1-206ENST00000571263 WDR62O43379 1518 aa19.81■□□□□ 0.76
CDRT1-206ENST00000571263 FGD5Q6ZNL6 1462 aa19.78■□□□□ 0.76
CDRT1-206ENST00000571263 THOC2Q8NI27 1593 aaKnown RBP19.77■□□□□ 0.76
CDRT1-206ENST00000571263 POLA1P09884 1462 aaPredicted RBP19.73■□□□□ 0.75
CDRT1-206ENST00000571263 SOGA1O94964 1423 aa19.73■□□□□ 0.75
CDRT1-206ENST00000571263 EEA1Q15075 1411 aa19.73■□□□□ 0.75
CDRT1-206ENST00000571263 KIF27Q86VH2 1401 aa19.66■□□□□ 0.74
CDRT1-206ENST00000571263 IFT140Q96RY7 1462 aa19.66■□□□□ 0.74
CDRT1-206ENST00000571263 ABCA10Q8WWZ4 1543 aa19.66■□□□□ 0.74
CDRT1-206ENST00000571263 CUX2O14529 1486 aa19.61■□□□□ 0.73
CDRT1-206ENST00000571263 RAD54L2Q9Y4B4 1467 aa19.61■□□□□ 0.73
CDRT1-206ENST00000571263 TARBP1Q13395 1621 aaKnown RBP19.59■□□□□ 0.73
CDRT1-206ENST00000571263 WDR97A6NE52 1622 aa19.58■□□□□ 0.73
CDRT1-206ENST00000571263 CSRNP3Q8WYN3 585 aa19.58■□□□□ 0.72
CDRT1-206ENST00000571263 FAM9AQ8IZU1 332 aaPredicted RBP19.53■□□□□ 0.72
CDRT1-206ENST00000571263 RUSC2Q8N2Y8 1516 aa19.51■□□□□ 0.71
CDRT1-206ENST00000571263 GAPVD1Q14C86 1478 aa19.49■□□□□ 0.71
CDRT1-206ENST00000571263 TDRD9Q8NDG6 1382 aaKnown RBP19.49■□□□□ 0.71
CDRT1-206ENST00000571263 ABCA5Q8WWZ7 1642 aa19.47■□□□□ 0.71
CDRT1-206ENST00000571263 IGF1RP08069 1367 aa19.46■□□□□ 0.71
CDRT1-206ENST00000571263 ERICH3Q5RHP9 1530 aa19.46■□□□□ 0.71
CDRT1-206ENST00000571263 GRIN2BQ13224 1484 aa19.42■□□□□ 0.7
CDRT1-206ENST00000571263 AQRO60306 1485 aaKnown RBP eCLIP19.41■□□□□ 0.7
CDRT1-206ENST00000571263 ZNF608Q9ULD9 1512 aaPredicted RBP19.41■□□□□ 0.7
CDRT1-206ENST00000571263 EIF4G3O43432 1585 aaKnown RBP19.38■□□□□ 0.69
CDRT1-206ENST00000571263 KIF21BO75037 1637 aa19.38■□□□□ 0.69
CDRT1-206ENST00000571263 CUL7Q14999 1698 aa19.38■□□□□ 0.69
CDRT1-206ENST00000571263 CARMIL1Q5VZK9 1371 aa19.38■□□□□ 0.69
CDRT1-206ENST00000571263 PRXQ9BXM0 1461 aa19.38■□□□□ 0.69
CDRT1-206ENST00000571263 PBRM1Q86U86 1689 aa19.35■□□□□ 0.69
CDRT1-206ENST00000571263 GOLGA3Q08378 1498 aa19.34■□□□□ 0.69
CDRT1-206ENST00000571263 RAPGEF2Q9Y4G8 1499 aa19.33■□□□□ 0.68
CDRT1-206ENST00000571263 MAGI1Q96QZ7 1491 aaPredicted RBP19.32■□□□□ 0.68
CDRT1-206ENST00000571263 FHAD1B1AJZ9 1412 aa19.32■□□□□ 0.68
CDRT1-206ENST00000571263 LOC105371045A0A1W2PR82 267 aa19.28■□□□□ 0.68
CDRT1-206ENST00000571263 UBTFP17480 764 aaKnown RBP19.26■□□□□ 0.67
CDRT1-206ENST00000571263 SNAPC4Q5SXM2 1469 aa19.25■□□□□ 0.67
CDRT1-206ENST00000571263 ADAMTS12P58397 1594 aa19.23■□□□□ 0.67
CDRT1-206ENST00000571263 TNIKQ9UKE5 1360 aa19.23■□□□□ 0.67
CDRT1-206ENST00000571263 SYNJ2O15056 1496 aa19.22■□□□□ 0.67
CDRT1-206ENST00000571263 CHMP7Q8WUX9 453 aaPredicted RBP19.2■□□□□ 0.66
CDRT1-206ENST00000571263 EHMT2Q96KQ7 1210 aa19.16■□□□□ 0.66
CDRT1-206ENST00000571263 GRIN2AQ12879 1464 aa19.14■□□□□ 0.65
CDRT1-206ENST00000571263 FBLN2P98095 1184 aa19.11■□□□□ 0.65
CDRT1-206ENST00000571263 CTTNBP2Q8WZ74 1663 aa19.05■□□□□ 0.64
CDRT1-206ENST00000571263 KIAA0586Q9BVV6 1533 aa19.05■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 77.4 ms