RNA–Protein interactions for RNA: ENST00000571190.1

CIITA-206, Transcript of class II major histocompatibility complex transactivator, humanhuman

Gene CIITA, Length 479 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-206ENST00000571190 NISCHQ9Y2I1 1504 aa44.12■■■■■ 4.65
CIITA-206ENST00000571190 ABCC9O60706 1549 aa39.6■■■■□ 3.93
CIITA-206ENST00000571190 CCDC180Q9P1Z9 1646 aa39.41■■■■□ 3.9
CIITA-206ENST00000571190 RB1CC1Q8TDY2 1594 aa37.59■■■■□ 3.61
CIITA-206ENST00000571190 NACADO15069 1562 aa37.36■■■■□ 3.57
CIITA-206ENST00000571190 DNAJC5BQ9UF47 199 aa37.3■■■■□ 3.56
CIITA-206ENST00000571190 DCAF8L2P0C7V8 631 aa37.27■■■■□ 3.56
CIITA-206ENST00000571190 PABPN1Q86U42 306 aaKnown RBP eCLIP36.95■■■■□ 3.51
CIITA-206ENST00000571190 MYO15BQ96JP2 1530 aa36.89■■■■□ 3.5
CIITA-206ENST00000571190 UNC13AQ9UPW8 1703 aa36.59■■■■□ 3.45
CIITA-206ENST00000571190 BICRAQ9NZM4 1560 aa36.58■■■■□ 3.45
CIITA-206ENST00000571190 ZCCHC6Q5VYS8 1495 aaKnown RBP36.56■■■■□ 3.44
CIITA-206ENST00000571190 DCAF1Q9Y4B6 1507 aa36.42■■■■□ 3.42
CIITA-206ENST00000571190 SHROOM4Q9ULL8 1493 aa36.03■■■■□ 3.36
CIITA-206ENST00000571190 SCRIBQ14160 1630 aa35.99■■■■□ 3.35
CIITA-206ENST00000571190 CC2D2AQ9P2K1 1620 aa35.7■■■■□ 3.31
CIITA-206ENST00000571190 CECR2Q9BXF3 1484 aa35.67■■■■□ 3.3
CIITA-206ENST00000571190 EIF4G1Q04637 1599 aaKnown RBP35.64■■■■□ 3.3
CIITA-206ENST00000571190 NCAPD3P42695 1498 aa34.59■■■■□ 3.13
CIITA-206ENST00000571190 ATAD2BQ9ULI0 1458 aa34.48■■■■□ 3.11
CIITA-206ENST00000571190 SMARCA4P51532 1647 aa34.33■■■■□ 3.09
CIITA-206ENST00000571190 SMARCA2P51531 1590 aa34.28■■■■□ 3.08
CIITA-206ENST00000571190 HMGXB3Q12766 1538 aa34.25■■■■□ 3.07
CIITA-206ENST00000571190 BAZ1AQ9NRL2 1556 aaPredicted RBP34.19■■■■□ 3.06
CIITA-206ENST00000571190 DNAJC5Q9H3Z4 198 aa34.18■■■■□ 3.06
CIITA-206ENST00000571190 ERCC6Q03468 1493 aa34.13■■■■□ 3.05
CIITA-206ENST00000571190 CUX2O14529 1486 aa34.08■■■■□ 3.05
CIITA-206ENST00000571190 BAZ1BQ9UIG0 1483 aaKnown RBP34.07■■■■□ 3.05
CIITA-206ENST00000571190 PEG3Q9GZU2 1588 aa34.04■■■■□ 3.04
CIITA-206ENST00000571190 NESP48681 1621 aa34.04■■■■□ 3.04
CIITA-206ENST00000571190 MROH2BQ7Z745 1585 aa34.02■■■■□ 3.04
CIITA-206ENST00000571190 LAMC3Q9Y6N6 1575 aa33.69■■■□□ 2.98
CIITA-206ENST00000571190 THOC2Q8NI27 1593 aaKnown RBP33.6■■■□□ 2.97
CIITA-206ENST00000571190 PDS5BQ9NTI5 1447 aa33.57■■■□□ 2.96
CIITA-206ENST00000571190 CADPSQ9ULU8 1353 aa33.55■■■□□ 2.96
CIITA-206ENST00000571190 WIZO95785 1651 aa33.51■■■□□ 2.95
CIITA-206ENST00000571190 KIF21AQ7Z4S6 1674 aa33.41■■■□□ 2.94
CIITA-206ENST00000571190 RSF1Q96T23 1441 aaPredicted RBP33.36■■■□□ 2.93
CIITA-206ENST00000571190 MRC2Q9UBG0 1479 aa33.27■■■□□ 2.92
CIITA-206ENST00000571190 WDR62O43379 1518 aa33.17■■■□□ 2.9
CIITA-206ENST00000571190 CFTRP13569 1480 aa33.15■■■□□ 2.9
CIITA-206ENST00000571190 FANCD2Q9BXW9 1451 aa33.12■■■□□ 2.89
CIITA-206ENST00000571190 TOP2AP11388 1531 aaKnown RBP33.12■■■□□ 2.89
CIITA-206ENST00000571190 CEP164Q9UPV0 1460 aa33.12■■■□□ 2.89
CIITA-206ENST00000571190 URB2Q14146 1524 aaKnown RBP32.87■■■□□ 2.85
CIITA-206ENST00000571190 CCDC88BA6NC98 1476 aa32.82■■■□□ 2.84
CIITA-206ENST00000571190 TRIM41Q8WV44 630 aa32.64■■■□□ 2.82
CIITA-206ENST00000571190 OSCARQ8IYS5 282 aa32.6■■■□□ 2.81
CIITA-206ENST00000571190 PRDM2Q13029 1718 aa32.49■■■□□ 2.79
CIITA-206ENST00000571190 TOPBP1Q92547 1522 aa32.49■■■□□ 2.79
CIITA-206ENST00000571190 IFT140Q96RY7 1462 aa32.48■■■□□ 2.79
CIITA-206ENST00000571190 ZNF608Q9ULD9 1512 aaPredicted RBP32.48■■■□□ 2.79
CIITA-206ENST00000571190 ABCC8Q09428 1581 aa32.36■■■□□ 2.77
CIITA-206ENST00000571190 DNMBPQ6XZF7 1577 aa32.32■■■□□ 2.76
CIITA-206ENST00000571190 AQRO60306 1485 aaKnown RBP eCLIP32.2■■■□□ 2.75
CIITA-206ENST00000571190 EIF4G3O43432 1585 aaKnown RBP32.18■■■□□ 2.74
CIITA-206ENST00000571190 POLA1P09884 1462 aaPredicted RBP32.17■■■□□ 2.74
CIITA-206ENST00000571190 TARBP1Q13395 1621 aaKnown RBP32.16■■■□□ 2.74
CIITA-206ENST00000571190 RAD54L2Q9Y4B4 1467 aa32.09■■■□□ 2.73
CIITA-206ENST00000571190 RIMBP3CA6NJZ7 1639 aa32.06■■■□□ 2.72
CIITA-206ENST00000571190 RIMBP3BA6NNM3 1639 aa32.06■■■□□ 2.72
CIITA-206ENST00000571190 RIMBP3Q9UFD9 1639 aa32.06■■■□□ 2.72
CIITA-206ENST00000571190 SOGA1O94964 1423 aa32.04■■■□□ 2.72
CIITA-206ENST00000571190 ARHGEF11O15085 1522 aa32.02■■■□□ 2.72
CIITA-206ENST00000571190 TDRD9Q8NDG6 1382 aaKnown RBP32.02■■■□□ 2.72
CIITA-206ENST00000571190 FGD5Q6ZNL6 1462 aa31.96■■■□□ 2.71
CIITA-206ENST00000571190 FBLN2P98095 1184 aa31.95■■■□□ 2.71
CIITA-206ENST00000571190 CUX1P39880 1505 aa31.95■■■□□ 2.7
CIITA-206ENST00000571190 SUPT5HO00267 1087 aaKnown RBP31.87■■■□□ 2.69
CIITA-206ENST00000571190 CYB5RLQ6IPT4 315 aa31.85■■■□□ 2.69
CIITA-206ENST00000571190 CHD1O14646 1710 aa31.84■■■□□ 2.69
CIITA-206ENST00000571190 SNAPC4Q5SXM2 1469 aa31.82■■■□□ 2.68
CIITA-206ENST00000571190 WDR97A6NE52 1622 aa31.76■■■□□ 2.67
CIITA-206ENST00000571190 ARAP1Q96P48 1450 aa31.75■■■□□ 2.67
CIITA-206ENST00000571190 GRIN2BQ13224 1484 aa31.73■■■□□ 2.67
CIITA-206ENST00000571190 CHMP7Q8WUX9 453 aaPredicted RBP31.72■■■□□ 2.67
CIITA-206ENST00000571190 MAGI1Q96QZ7 1491 aaPredicted RBP31.71■■■□□ 2.67
CIITA-206ENST00000571190 CLASP1Q7Z460 1538 aa31.64■■■□□ 2.66
CIITA-206ENST00000571190 SYNJ2O15056 1496 aa31.62■■■□□ 2.65
CIITA-206ENST00000571190 GAPVD1Q14C86 1478 aa31.62■■■□□ 2.65
CIITA-206ENST00000571190 ABCA10Q8WWZ4 1543 aa31.6■■■□□ 2.65
CIITA-206ENST00000571190 SYNJ1O43426 1573 aa31.55■■■□□ 2.64
CIITA-206ENST00000571190 ABCA5Q8WWZ7 1642 aa31.49■■■□□ 2.63
CIITA-206ENST00000571190 WRNQ14191 1432 aaPredicted RBP eCLIP31.48■■■□□ 2.63
CIITA-206ENST00000571190 TRHP20396 242 aaPredicted RBP31.45■■■□□ 2.63
CIITA-206ENST00000571190 PBRM1Q86U86 1689 aa31.42■■■□□ 2.62
CIITA-206ENST00000571190 TOP2BQ02880 1626 aa31.36■■■□□ 2.61
CIITA-206ENST00000571190 BIVM-ERCC5R4GMW8 1640 aa31.32■■■□□ 2.6
CIITA-206ENST00000571190 GRIN2AQ12879 1464 aa31.32■■■□□ 2.6
CIITA-206ENST00000571190 NUP160Q12769 1436 aa31.26■■■□□ 2.6
CIITA-206ENST00000571190 ADAMTS12P58397 1594 aa31.25■■■□□ 2.59
CIITA-206ENST00000571190 FHAD1B1AJZ9 1412 aa31.24■■■□□ 2.59
CIITA-206ENST00000571190 CEP170Q5SW79 1584 aa31.19■■■□□ 2.58
CIITA-206ENST00000571190 ERCC6L2Q5T890 1561 aa31.18■■■□□ 2.58
CIITA-206ENST00000571190 ERICH3Q5RHP9 1530 aa31.16■■■□□ 2.58
CIITA-206ENST00000571190 SHROOM2Q13796 1616 aa31.02■■■□□ 2.56
CIITA-206ENST00000571190 JPH4Q96JJ6 628 aa30.97■■■□□ 2.55
CIITA-206ENST00000571190 PRG4Q92954 1404 aaPredicted RBP30.95■■■□□ 2.54
CIITA-206ENST00000571190 IGF1RP08069 1367 aa30.9■■■□□ 2.54
CIITA-206ENST00000571190 KIF27Q86VH2 1401 aa30.81■■■□□ 2.52
Retrieved 100 of 20,778 RNA–protein pairs in 76.2 ms