RNA–Protein interactions for RNA: ENST00000571186.5

CIITA-205, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 1,041 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-205ENST00000571186 NISCHQ9Y2I1 1504 aa36.01■■■■□ 3.36
CIITA-205ENST00000571186 ABCC9O60706 1549 aa32.68■■■□□ 2.82
CIITA-205ENST00000571186 CCDC180Q9P1Z9 1646 aa32.4■■■□□ 2.78
CIITA-205ENST00000571186 RB1CC1Q8TDY2 1594 aa30.98■■■□□ 2.55
CIITA-205ENST00000571186 DNAJC5BQ9UF47 199 aa30.88■■■□□ 2.53
CIITA-205ENST00000571186 NACADO15069 1562 aa30.7■■■□□ 2.5
CIITA-205ENST00000571186 DCAF8L2P0C7V8 631 aa30.67■■■□□ 2.5
CIITA-205ENST00000571186 PABPN1Q86U42 306 aaKnown RBP eCLIP30.44■■■□□ 2.46
CIITA-205ENST00000571186 UNC13AQ9UPW8 1703 aa30.33■■■□□ 2.45
CIITA-205ENST00000571186 MYO15BQ96JP2 1530 aa30.13■■■□□ 2.41
CIITA-205ENST00000571186 BICRAQ9NZM4 1560 aa30.07■■■□□ 2.4
CIITA-205ENST00000571186 ZCCHC6Q5VYS8 1495 aaKnown RBP29.75■■■□□ 2.35
CIITA-205ENST00000571186 DCAF1Q9Y4B6 1507 aa29.68■■■□□ 2.34
CIITA-205ENST00000571186 SHROOM4Q9ULL8 1493 aa29.56■■■□□ 2.32
CIITA-205ENST00000571186 SCRIBQ14160 1630 aa29.56■■■□□ 2.32
CIITA-205ENST00000571186 CC2D2AQ9P2K1 1620 aa29.5■■■□□ 2.31
CIITA-205ENST00000571186 CECR2Q9BXF3 1484 aa29.44■■■□□ 2.3
CIITA-205ENST00000571186 EIF4G1Q04637 1599 aaKnown RBP29.35■■■□□ 2.29
CIITA-205ENST00000571186 DNAJC5Q9H3Z4 198 aa28.52■■■□□ 2.16
CIITA-205ENST00000571186 NCAPD3P42695 1498 aa28.34■■■□□ 2.13
CIITA-205ENST00000571186 ERCC6Q03468 1493 aa28.24■■■□□ 2.11
CIITA-205ENST00000571186 ATAD2BQ9ULI0 1458 aa28.22■■■□□ 2.11
CIITA-205ENST00000571186 CUX2O14529 1486 aa28.21■■■□□ 2.11
CIITA-205ENST00000571186 SMARCA4P51532 1647 aa28.14■■■□□ 2.1
CIITA-205ENST00000571186 SMARCA2P51531 1590 aa28.14■■■□□ 2.1
CIITA-205ENST00000571186 HMGXB3Q12766 1538 aa28.08■■■□□ 2.08
CIITA-205ENST00000571186 NESP48681 1621 aa28■■■□□ 2.07
CIITA-205ENST00000571186 BAZ1AQ9NRL2 1556 aaPredicted RBP27.97■■■□□ 2.07
CIITA-205ENST00000571186 BAZ1BQ9UIG0 1483 aaKnown RBP27.95■■■□□ 2.07
CIITA-205ENST00000571186 PEG3Q9GZU2 1588 aa27.82■■■□□ 2.04
CIITA-205ENST00000571186 MROH2BQ7Z745 1585 aa27.76■■■□□ 2.03
CIITA-205ENST00000571186 LAMC3Q9Y6N6 1575 aa27.74■■■□□ 2.03
CIITA-205ENST00000571186 THOC2Q8NI27 1593 aaKnown RBP27.71■■■□□ 2.03
CIITA-205ENST00000571186 KIF21AQ7Z4S6 1674 aa27.65■■■□□ 2.02
CIITA-205ENST00000571186 PDS5BQ9NTI5 1447 aa27.62■■■□□ 2.01
CIITA-205ENST00000571186 CADPSQ9ULU8 1353 aa27.48■■□□□ 1.99
CIITA-205ENST00000571186 WIZO95785 1651 aa27.45■■□□□ 1.98
CIITA-205ENST00000571186 MRC2Q9UBG0 1479 aa27.36■■□□□ 1.97
CIITA-205ENST00000571186 WDR62O43379 1518 aa27.28■■□□□ 1.96
CIITA-205ENST00000571186 TRIM41Q8WV44 630 aa27.24■■□□□ 1.95
CIITA-205ENST00000571186 CEP164Q9UPV0 1460 aa27.23■■□□□ 1.95
CIITA-205ENST00000571186 FANCD2Q9BXW9 1451 aa27.18■■□□□ 1.94
CIITA-205ENST00000571186 RSF1Q96T23 1441 aaPredicted RBP27.1■■□□□ 1.93
CIITA-205ENST00000571186 CFTRP13569 1480 aa27.1■■□□□ 1.93
CIITA-205ENST00000571186 TOP2AP11388 1531 aaKnown RBP27.03■■□□□ 1.92
CIITA-205ENST00000571186 OSCARQ8IYS5 282 aa26.97■■□□□ 1.91
CIITA-205ENST00000571186 URB2Q14146 1524 aaKnown RBP26.96■■□□□ 1.91
CIITA-205ENST00000571186 PRDM2Q13029 1718 aa26.87■■□□□ 1.89
CIITA-205ENST00000571186 CCDC88BA6NC98 1476 aa26.77■■□□□ 1.88
CIITA-205ENST00000571186 ZNF608Q9ULD9 1512 aaPredicted RBP26.68■■□□□ 1.86
CIITA-205ENST00000571186 IFT140Q96RY7 1462 aa26.68■■□□□ 1.86
CIITA-205ENST00000571186 TOPBP1Q92547 1522 aa26.64■■□□□ 1.85
CIITA-205ENST00000571186 RIMBP3CA6NJZ7 1639 aa26.6■■□□□ 1.85
CIITA-205ENST00000571186 RIMBP3BA6NNM3 1639 aa26.6■■□□□ 1.85
CIITA-205ENST00000571186 RIMBP3Q9UFD9 1639 aa26.6■■□□□ 1.85
CIITA-205ENST00000571186 ABCC8Q09428 1581 aa26.57■■□□□ 1.84
CIITA-205ENST00000571186 DNMBPQ6XZF7 1577 aa26.5■■□□□ 1.83
CIITA-205ENST00000571186 EIF4G3O43432 1585 aaKnown RBP26.5■■□□□ 1.83
CIITA-205ENST00000571186 ARHGEF11O15085 1522 aa26.47■■□□□ 1.83
CIITA-205ENST00000571186 AQRO60306 1485 aaKnown RBP eCLIP26.43■■□□□ 1.82
CIITA-205ENST00000571186 TARBP1Q13395 1621 aaKnown RBP26.41■■□□□ 1.82
CIITA-205ENST00000571186 CHD1O14646 1710 aa26.4■■□□□ 1.82
CIITA-205ENST00000571186 FBLN2P98095 1184 aa26.39■■□□□ 1.82
CIITA-205ENST00000571186 CYB5RLQ6IPT4 315 aa26.39■■□□□ 1.82
CIITA-205ENST00000571186 POLA1P09884 1462 aaPredicted RBP26.34■■□□□ 1.81
CIITA-205ENST00000571186 RAD54L2Q9Y4B4 1467 aa26.28■■□□□ 1.8
CIITA-205ENST00000571186 SOGA1O94964 1423 aa26.26■■□□□ 1.79
CIITA-205ENST00000571186 TDRD9Q8NDG6 1382 aaKnown RBP26.24■■□□□ 1.79
CIITA-205ENST00000571186 TRHP20396 242 aaPredicted RBP26.2■■□□□ 1.78
CIITA-205ENST00000571186 ARAP1Q96P48 1450 aa26.19■■□□□ 1.78
CIITA-205ENST00000571186 FGD5Q6ZNL6 1462 aa26.15■■□□□ 1.78
CIITA-205ENST00000571186 SNAPC4Q5SXM2 1469 aa26.12■■□□□ 1.77
CIITA-205ENST00000571186 CHMP7Q8WUX9 453 aaPredicted RBP26.12■■□□□ 1.77
CIITA-205ENST00000571186 CUX1P39880 1505 aa26.09■■□□□ 1.77
CIITA-205ENST00000571186 WDR97A6NE52 1622 aa26.08■■□□□ 1.77
CIITA-205ENST00000571186 GRIN2BQ13224 1484 aa26.03■■□□□ 1.76
CIITA-205ENST00000571186 MAGI1Q96QZ7 1491 aaPredicted RBP26.03■■□□□ 1.76
CIITA-205ENST00000571186 CLASP1Q7Z460 1538 aa26.02■■□□□ 1.76
CIITA-205ENST00000571186 SYNJ1O43426 1573 aa26.02■■□□□ 1.76
CIITA-205ENST00000571186 SYNJ2O15056 1496 aa25.95■■□□□ 1.74
CIITA-205ENST00000571186 PBRM1Q86U86 1689 aa25.93■■□□□ 1.74
CIITA-205ENST00000571186 GAPVD1Q14C86 1478 aa25.92■■□□□ 1.74
CIITA-205ENST00000571186 SUPT5HO00267 1087 aaKnown RBP25.86■■□□□ 1.73
CIITA-205ENST00000571186 ABCA10Q8WWZ4 1543 aa25.82■■□□□ 1.72
CIITA-205ENST00000571186 ABCA5Q8WWZ7 1642 aa25.8■■□□□ 1.72
CIITA-205ENST00000571186 WRNQ14191 1432 aaPredicted RBP eCLIP25.71■■□□□ 1.71
CIITA-205ENST00000571186 GRIN2AQ12879 1464 aa25.68■■□□□ 1.7
CIITA-205ENST00000571186 ERCC6L2Q5T890 1561 aa25.64■■□□□ 1.69
CIITA-205ENST00000571186 ADAMTS12P58397 1594 aa25.62■■□□□ 1.69
CIITA-205ENST00000571186 AEBP2Q6ZN18 517 aaPredicted RBP25.61■■□□□ 1.69
CIITA-205ENST00000571186 TOP2BQ02880 1626 aa25.61■■□□□ 1.69
CIITA-205ENST00000571186 BIVM-ERCC5R4GMW8 1640 aa25.61■■□□□ 1.69
CIITA-205ENST00000571186 CEP170Q5SW79 1584 aa25.6■■□□□ 1.69
CIITA-205ENST00000571186 NUP160Q12769 1436 aa25.58■■□□□ 1.69
CIITA-205ENST00000571186 FHAD1B1AJZ9 1412 aa25.56■■□□□ 1.68
CIITA-205ENST00000571186 SHROOM2Q13796 1616 aa25.5■■□□□ 1.67
CIITA-205ENST00000571186 ERICH3Q5RHP9 1530 aa25.5■■□□□ 1.67
CIITA-205ENST00000571186 JPH4Q96JJ6 628 aa25.42■■□□□ 1.66
CIITA-205ENST00000571186 PRG4Q92954 1404 aaPredicted RBP25.41■■□□□ 1.66
CIITA-205ENST00000571186 KIF13AQ9H1H9 1805 aa25.35■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms