RNA–Protein interactions for RNA: ENST00000571064.5

UBFD1-210, Transcript of ubiquitin family domain containing 1, humanhuman

TSL 3

Gene UBFD1, Length 794 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBFD1-210ENST00000571064 NISCHQ9Y2I1 1504 aa53.01■■■■■ 6.08
UBFD1-210ENST00000571064 ABCC9O60706 1549 aa48.58■■■■■ 5.37
UBFD1-210ENST00000571064 CCDC180Q9P1Z9 1646 aa47.78■■■■■ 5.24
UBFD1-210ENST00000571064 DNAJC5BQ9UF47 199 aa46.25■■■■■ 4.99
UBFD1-210ENST00000571064 RB1CC1Q8TDY2 1594 aa45.85■■■■■ 4.93
UBFD1-210ENST00000571064 NACADO15069 1562 aa45.37■■■■■ 4.85
UBFD1-210ENST00000571064 PABPN1Q86U42 306 aaKnown RBP eCLIP45.17■■■■■ 4.82
UBFD1-210ENST00000571064 DCAF8L2P0C7V8 631 aa45.15■■■■■ 4.82
UBFD1-210ENST00000571064 UNC13AQ9UPW8 1703 aa44.83■■■■■ 4.77
UBFD1-210ENST00000571064 BICRAQ9NZM4 1560 aa44.59■■■■■ 4.73
UBFD1-210ENST00000571064 MYO15BQ96JP2 1530 aa44.48■■■■■ 4.71
UBFD1-210ENST00000571064 CC2D2AQ9P2K1 1620 aa43.81■■■■■ 4.6
UBFD1-210ENST00000571064 CECR2Q9BXF3 1484 aa43.8■■■■■ 4.6
UBFD1-210ENST00000571064 SHROOM4Q9ULL8 1493 aa43.8■■■■■ 4.6
UBFD1-210ENST00000571064 ZCCHC6Q5VYS8 1495 aaKnown RBP43.77■■■■■ 4.6
UBFD1-210ENST00000571064 DCAF1Q9Y4B6 1507 aa43.68■■■■■ 4.58
UBFD1-210ENST00000571064 SCRIBQ14160 1630 aa43.59■■■■■ 4.57
UBFD1-210ENST00000571064 EIF4G1Q04637 1599 aaKnown RBP43.54■■■■■ 4.56
UBFD1-210ENST00000571064 DNAJC5Q9H3Z4 198 aa42.9■■■■■ 4.46
UBFD1-210ENST00000571064 CUX2O14529 1486 aa42.06■■■■■ 4.32
UBFD1-210ENST00000571064 ERCC6Q03468 1493 aa41.96■■■■■ 4.31
UBFD1-210ENST00000571064 NCAPD3P42695 1498 aa41.92■■■■■ 4.3
UBFD1-210ENST00000571064 ATAD2BQ9ULI0 1458 aa41.72■■■■■ 4.27
UBFD1-210ENST00000571064 NESP48681 1621 aa41.55■■■■■ 4.24
UBFD1-210ENST00000571064 SMARCA2P51531 1590 aa41.51■■■■■ 4.24
UBFD1-210ENST00000571064 HMGXB3Q12766 1538 aa41.51■■■■■ 4.24
UBFD1-210ENST00000571064 SMARCA4P51532 1647 aa41.47■■■■■ 4.23
UBFD1-210ENST00000571064 BAZ1BQ9UIG0 1483 aaKnown RBP41.27■■■■■ 4.2
UBFD1-210ENST00000571064 THOC2Q8NI27 1593 aaKnown RBP41.2■■■■■ 4.19
UBFD1-210ENST00000571064 BAZ1AQ9NRL2 1556 aaPredicted RBP41.16■■■■■ 4.18
UBFD1-210ENST00000571064 PEG3Q9GZU2 1588 aa41.05■■■■■ 4.16
UBFD1-210ENST00000571064 LAMC3Q9Y6N6 1575 aa41.05■■■■■ 4.16
UBFD1-210ENST00000571064 KIF21AQ7Z4S6 1674 aa40.93■■■■■ 4.14
UBFD1-210ENST00000571064 MROH2BQ7Z745 1585 aa40.87■■■■■ 4.13
UBFD1-210ENST00000571064 PDS5BQ9NTI5 1447 aa40.86■■■■■ 4.13
UBFD1-210ENST00000571064 TRIM41Q8WV44 630 aa40.79■■■■■ 4.12
UBFD1-210ENST00000571064 CADPSQ9ULU8 1353 aa40.63■■■■■ 4.1
UBFD1-210ENST00000571064 MRC2Q9UBG0 1479 aa40.57■■■■■ 4.08
UBFD1-210ENST00000571064 WDR62O43379 1518 aa40.47■■■■■ 4.07
UBFD1-210ENST00000571064 WIZO95785 1651 aa40.34■■■■■ 4.05
UBFD1-210ENST00000571064 CEP164Q9UPV0 1460 aa40.27■■■■■ 4.04
UBFD1-210ENST00000571064 FANCD2Q9BXW9 1451 aa40.18■■■■■ 4.02
UBFD1-210ENST00000571064 OSCARQ8IYS5 282 aa40.09■■■■■ 4.01
UBFD1-210ENST00000571064 CFTRP13569 1480 aa40.01■■■■■ 4
UBFD1-210ENST00000571064 URB2Q14146 1524 aaKnown RBP39.91■■■■□ 3.98
UBFD1-210ENST00000571064 RSF1Q96T23 1441 aaPredicted RBP39.77■■■■□ 3.96
UBFD1-210ENST00000571064 TOP2AP11388 1531 aaKnown RBP39.74■■■■□ 3.95
UBFD1-210ENST00000571064 RIMBP3CA6NJZ7 1639 aa39.62■■■■□ 3.93
UBFD1-210ENST00000571064 RIMBP3BA6NNM3 1639 aa39.62■■■■□ 3.93
UBFD1-210ENST00000571064 RIMBP3Q9UFD9 1639 aa39.62■■■■□ 3.93
UBFD1-210ENST00000571064 ZNF608Q9ULD9 1512 aaPredicted RBP39.55■■■■□ 3.92
UBFD1-210ENST00000571064 IFT140Q96RY7 1462 aa39.48■■■■□ 3.91
UBFD1-210ENST00000571064 PRDM2Q13029 1718 aa39.48■■■■□ 3.91
UBFD1-210ENST00000571064 ARHGEF11O15085 1522 aa39.44■■■■□ 3.9
UBFD1-210ENST00000571064 CCDC88BA6NC98 1476 aa39.35■■■■□ 3.89
UBFD1-210ENST00000571064 TOPBP1Q92547 1522 aa39.35■■■■□ 3.89
UBFD1-210ENST00000571064 CYB5RLQ6IPT4 315 aa39.25■■■■□ 3.87
UBFD1-210ENST00000571064 EIF4G3O43432 1585 aaKnown RBP39.24■■■■□ 3.87
UBFD1-210ENST00000571064 ABCC8Q09428 1581 aa39.15■■■■□ 3.86
UBFD1-210ENST00000571064 AQRO60306 1485 aaKnown RBP eCLIP39.11■■■■□ 3.851e-6■■■■■ 29.3
UBFD1-210ENST00000571064 DNMBPQ6XZF7 1577 aa39.1■■■■□ 3.85
UBFD1-210ENST00000571064 CHD1O14646 1710 aa39.08■■■■□ 3.85
UBFD1-210ENST00000571064 TRHP20396 242 aaPredicted RBP39.03■■■■□ 3.84
UBFD1-210ENST00000571064 TARBP1Q13395 1621 aaKnown RBP39.03■■■■□ 3.84
UBFD1-210ENST00000571064 ARAP1Q96P48 1450 aa39.02■■■■□ 3.84
UBFD1-210ENST00000571064 FBLN2P98095 1184 aa39.01■■■■□ 3.84
UBFD1-210ENST00000571064 POLA1P09884 1462 aaPredicted RBP38.9■■■■□ 3.82
UBFD1-210ENST00000571064 RAD54L2Q9Y4B4 1467 aa38.81■■■■□ 3.8
UBFD1-210ENST00000571064 TDRD9Q8NDG6 1382 aaKnown RBP38.78■■■■□ 3.8
UBFD1-210ENST00000571064 SOGA1O94964 1423 aa38.72■■■■□ 3.79
UBFD1-210ENST00000571064 SNAPC4Q5SXM2 1469 aa38.66■■■■□ 3.78
UBFD1-210ENST00000571064 CLASP1Q7Z460 1538 aa38.61■■■■□ 3.77
UBFD1-210ENST00000571064 SUPT5HO00267 1087 aaKnown RBP38.58■■■■□ 3.77
UBFD1-210ENST00000571064 CHMP7Q8WUX9 453 aaPredicted RBP38.58■■■■□ 3.77
UBFD1-210ENST00000571064 FGD5Q6ZNL6 1462 aa38.57■■■■□ 3.76
UBFD1-210ENST00000571064 SYNJ1O43426 1573 aa38.5■■■■□ 3.75
UBFD1-210ENST00000571064 WDR97A6NE52 1622 aa38.49■■■■□ 3.75
UBFD1-210ENST00000571064 MAGI1Q96QZ7 1491 aaPredicted RBP38.48■■■■□ 3.75
UBFD1-210ENST00000571064 CUX1P39880 1505 aa38.43■■■■□ 3.74
UBFD1-210ENST00000571064 GRIN2BQ13224 1484 aa38.43■■■■□ 3.74
UBFD1-210ENST00000571064 SYNJ2O15056 1496 aa38.39■■■■□ 3.74
UBFD1-210ENST00000571064 AEBP2Q6ZN18 517 aaPredicted RBP38.37■■■■□ 3.73
UBFD1-210ENST00000571064 GAPVD1Q14C86 1478 aa38.28■■■■□ 3.72
UBFD1-210ENST00000571064 PBRM1Q86U86 1689 aa38.21■■■■□ 3.71
UBFD1-210ENST00000571064 ABCA10Q8WWZ4 1543 aa38.06■■■■□ 3.68
UBFD1-210ENST00000571064 ABCA5Q8WWZ7 1642 aa38.05■■■■□ 3.68
UBFD1-210ENST00000571064 ERCC6L2Q5T890 1561 aa38.03■■■■□ 3.68
UBFD1-210ENST00000571064 GRIN2AQ12879 1464 aa37.95■■■■□ 3.67
UBFD1-210ENST00000571064 CEP170Q5SW79 1584 aa37.87■■■■□ 3.65
UBFD1-210ENST00000571064 NUP160Q12769 1436 aa37.85■■■■□ 3.65
UBFD1-210ENST00000571064 ADAMTS12P58397 1594 aa37.82■■■■□ 3.65
UBFD1-210ENST00000571064 WRNQ14191 1432 aaPredicted RBP eCLIP37.78■■■■□ 3.64
UBFD1-210ENST00000571064 SHROOM2Q13796 1616 aa37.72■■■■□ 3.63
UBFD1-210ENST00000571064 FHAD1B1AJZ9 1412 aa37.7■■■■□ 3.62
UBFD1-210ENST00000571064 KIF13AQ9H1H9 1805 aa37.61■■■■□ 3.61
UBFD1-210ENST00000571064 TOP2BQ02880 1626 aa37.58■■■■□ 3.61
UBFD1-210ENST00000571064 BIVM-ERCC5R4GMW8 1640 aa37.58■■■■□ 3.61
UBFD1-210ENST00000571064 PRG4Q92954 1404 aaPredicted RBP37.57■■■■□ 3.6
UBFD1-210ENST00000571064 ERICH3Q5RHP9 1530 aa37.55■■■■□ 3.6
UBFD1-210ENST00000571064 JPH4Q96JJ6 628 aa37.5■■■■□ 3.59
Retrieved 100 of 20,778 RNA–protein pairs in 113.8 ms