RNA–Protein interactions for RNA: ENST00000571028.1

CCDC40-205, Transcript of coiled-coil domain containing 40, humanhuman

TSL 5

Gene CCDC40, Length 593 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-205ENST00000571028 NISCHQ9Y2I1 1504 aa32.78■■■□□ 2.84
CCDC40-205ENST00000571028 ABCC9O60706 1549 aa30.22■■■□□ 2.43
CCDC40-205ENST00000571028 CCDC180Q9P1Z9 1646 aa29.63■■■□□ 2.33
CCDC40-205ENST00000571028 DNAJC5BQ9UF47 199 aa28.72■■■□□ 2.19
CCDC40-205ENST00000571028 RB1CC1Q8TDY2 1594 aa28.52■■■□□ 2.16
CCDC40-205ENST00000571028 NACADO15069 1562 aa28.18■■■□□ 2.1
CCDC40-205ENST00000571028 DCAF8L2P0C7V8 631 aa28.06■■■□□ 2.08
CCDC40-205ENST00000571028 PABPN1Q86U42 306 aaKnown RBP eCLIP28.06■■■□□ 2.08
CCDC40-205ENST00000571028 UNC13AQ9UPW8 1703 aa27.7■■■□□ 2.03
CCDC40-205ENST00000571028 BICRAQ9NZM4 1560 aa27.6■■■□□ 2.01
CCDC40-205ENST00000571028 MYO15BQ96JP2 1530 aa27.57■■■□□ 2
CCDC40-205ENST00000571028 CECR2Q9BXF3 1484 aa27.28■■□□□ 1.96
CCDC40-205ENST00000571028 SHROOM4Q9ULL8 1493 aa27.28■■□□□ 1.96
CCDC40-205ENST00000571028 CC2D2AQ9P2K1 1620 aa27.22■■□□□ 1.95
CCDC40-205ENST00000571028 ZCCHC6Q5VYS8 1495 aaKnown RBP27.06■■□□□ 1.92
CCDC40-205ENST00000571028 EIF4G1Q04637 1599 aaKnown RBP27.04■■□□□ 1.92
CCDC40-205ENST00000571028 DCAF1Q9Y4B6 1507 aa27.03■■□□□ 1.92
CCDC40-205ENST00000571028 SCRIBQ14160 1630 aa27.01■■□□□ 1.92
CCDC40-205ENST00000571028 DNAJC5Q9H3Z4 198 aa26.82■■□□□ 1.88
CCDC40-205ENST00000571028 CUX2O14529 1486 aa26.26■■□□□ 1.79
CCDC40-205ENST00000571028 ERCC6Q03468 1493 aa26.21■■□□□ 1.79
CCDC40-205ENST00000571028 NCAPD3P42695 1498 aa26.01■■□□□ 1.75
CCDC40-205ENST00000571028 ATAD2BQ9ULI0 1458 aa25.85■■□□□ 1.73
CCDC40-205ENST00000571028 SMARCA2P51531 1590 aa25.79■■□□□ 1.72
CCDC40-205ENST00000571028 HMGXB3Q12766 1538 aa25.77■■□□□ 1.72
CCDC40-205ENST00000571028 NESP48681 1621 aa25.76■■□□□ 1.71
CCDC40-205ENST00000571028 SMARCA4P51532 1647 aa25.68■■□□□ 1.7
CCDC40-205ENST00000571028 BAZ1BQ9UIG0 1483 aaKnown RBP25.64■■□□□ 1.69
CCDC40-205ENST00000571028 THOC2Q8NI27 1593 aaKnown RBP25.58■■□□□ 1.69
CCDC40-205ENST00000571028 TRIM41Q8WV44 630 aa25.54■■□□□ 1.68
CCDC40-205ENST00000571028 BAZ1AQ9NRL2 1556 aaPredicted RBP25.52■■□□□ 1.68
CCDC40-205ENST00000571028 LAMC3Q9Y6N6 1575 aa25.52■■□□□ 1.68
CCDC40-205ENST00000571028 PDS5BQ9NTI5 1447 aa25.46■■□□□ 1.67
CCDC40-205ENST00000571028 PEG3Q9GZU2 1588 aa25.4■■□□□ 1.66
CCDC40-205ENST00000571028 KIF21AQ7Z4S6 1674 aa25.37■■□□□ 1.65
CCDC40-205ENST00000571028 MROH2BQ7Z745 1585 aa25.24■■□□□ 1.63
CCDC40-205ENST00000571028 MRC2Q9UBG0 1479 aa25.23■■□□□ 1.63
CCDC40-205ENST00000571028 CADPSQ9ULU8 1353 aa25.22■■□□□ 1.63
CCDC40-205ENST00000571028 WDR62O43379 1518 aa25.15■■□□□ 1.62
CCDC40-205ENST00000571028 CEP164Q9UPV0 1460 aa25.05■■□□□ 1.6
CCDC40-205ENST00000571028 OSCARQ8IYS5 282 aa25.01■■□□□ 1.59
CCDC40-205ENST00000571028 FANCD2Q9BXW9 1451 aa24.95■■□□□ 1.58
CCDC40-205ENST00000571028 WIZO95785 1651 aa24.9■■□□□ 1.58
CCDC40-205ENST00000571028 CFTRP13569 1480 aa24.8■■□□□ 1.56
CCDC40-205ENST00000571028 URB2Q14146 1524 aaKnown RBP24.73■■□□□ 1.55
CCDC40-205ENST00000571028 RIMBP3CA6NJZ7 1639 aa24.66■■□□□ 1.54
CCDC40-205ENST00000571028 RIMBP3BA6NNM3 1639 aa24.66■■□□□ 1.54
CCDC40-205ENST00000571028 RIMBP3Q9UFD9 1639 aa24.66■■□□□ 1.54
CCDC40-205ENST00000571028 TOP2AP11388 1531 aaKnown RBP24.6■■□□□ 1.53
CCDC40-205ENST00000571028 ARHGEF11O15085 1522 aa24.56■■□□□ 1.52
CCDC40-205ENST00000571028 IFT140Q96RY7 1462 aa24.56■■□□□ 1.52
CCDC40-205ENST00000571028 RSF1Q96T23 1441 aaPredicted RBP24.54■■□□□ 1.52
CCDC40-205ENST00000571028 ZNF608Q9ULD9 1512 aaPredicted RBP24.52■■□□□ 1.52
CCDC40-205ENST00000571028 CYB5RLQ6IPT4 315 aa24.47■■□□□ 1.51
CCDC40-205ENST00000571028 TRHP20396 242 aaPredicted RBP24.44■■□□□ 1.5
CCDC40-205ENST00000571028 PRDM2Q13029 1718 aa24.42■■□□□ 1.5
CCDC40-205ENST00000571028 TOPBP1Q92547 1522 aa24.39■■□□□ 1.49
CCDC40-205ENST00000571028 EIF4G3O43432 1585 aaKnown RBP24.37■■□□□ 1.49
CCDC40-205ENST00000571028 ABCC8Q09428 1581 aa24.34■■□□□ 1.49
CCDC40-205ENST00000571028 FBLN2P98095 1184 aa24.32■■□□□ 1.48
CCDC40-205ENST00000571028 CCDC88BA6NC98 1476 aa24.31■■□□□ 1.48
CCDC40-205ENST00000571028 ARAP1Q96P48 1450 aa24.27■■□□□ 1.48
CCDC40-205ENST00000571028 DNMBPQ6XZF7 1577 aa24.26■■□□□ 1.47
CCDC40-205ENST00000571028 AQRO60306 1485 aaKnown RBP eCLIP24.26■■□□□ 1.47
CCDC40-205ENST00000571028 CHD1O14646 1710 aa24.24■■□□□ 1.47
CCDC40-205ENST00000571028 AEBP2Q6ZN18 517 aaPredicted RBP24.16■■□□□ 1.46
CCDC40-205ENST00000571028 TARBP1Q13395 1621 aaKnown RBP24.16■■□□□ 1.46
CCDC40-205ENST00000571028 POLA1P09884 1462 aaPredicted RBP24.11■■□□□ 1.45
CCDC40-205ENST00000571028 TDRD9Q8NDG6 1382 aaKnown RBP24.04■■□□□ 1.44
CCDC40-205ENST00000571028 RAD54L2Q9Y4B4 1467 aa24.03■■□□□ 1.44
CCDC40-205ENST00000571028 CHMP7Q8WUX9 453 aaPredicted RBP24.03■■□□□ 1.44
CCDC40-205ENST00000571028 SOGA1O94964 1423 aa24.02■■□□□ 1.44
CCDC40-205ENST00000571028 SNAPC4Q5SXM2 1469 aa24.01■■□□□ 1.43
CCDC40-205ENST00000571028 SYNJ1O43426 1573 aa23.98■■□□□ 1.43
CCDC40-205ENST00000571028 CLASP1Q7Z460 1538 aa23.97■■□□□ 1.43
CCDC40-205ENST00000571028 WDR97A6NE52 1622 aa23.93■■□□□ 1.42
CCDC40-205ENST00000571028 MAGI1Q96QZ7 1491 aaPredicted RBP23.93■■□□□ 1.42
CCDC40-205ENST00000571028 FGD5Q6ZNL6 1462 aa23.9■■□□□ 1.42
CCDC40-205ENST00000571028 GRIN2BQ13224 1484 aa23.88■■□□□ 1.41
CCDC40-205ENST00000571028 SUPT5HO00267 1087 aaKnown RBP23.88■■□□□ 1.41
CCDC40-205ENST00000571028 SYNJ2O15056 1496 aa23.86■■□□□ 1.41
CCDC40-205ENST00000571028 GAPVD1Q14C86 1478 aa23.81■■□□□ 1.4
CCDC40-205ENST00000571028 CUX1P39880 1505 aa23.76■■□□□ 1.39
CCDC40-205ENST00000571028 PBRM1Q86U86 1689 aa23.67■■□□□ 1.38
CCDC40-205ENST00000571028 ABCA10Q8WWZ4 1543 aa23.58■■□□□ 1.36
CCDC40-205ENST00000571028 ABCA5Q8WWZ7 1642 aa23.56■■□□□ 1.36
CCDC40-205ENST00000571028 GRIN2AQ12879 1464 aa23.56■■□□□ 1.36
CCDC40-205ENST00000571028 ERCC6L2Q5T890 1561 aa23.54■■□□□ 1.36
CCDC40-205ENST00000571028 CEP170Q5SW79 1584 aa23.5■■□□□ 1.35
CCDC40-205ENST00000571028 NUP160Q12769 1436 aa23.47■■□□□ 1.35
CCDC40-205ENST00000571028 ADAMTS12P58397 1594 aa23.45■■□□□ 1.34
CCDC40-205ENST00000571028 WRNQ14191 1432 aaPredicted RBP eCLIP23.44■■□□□ 1.34
CCDC40-205ENST00000571028 FHAD1B1AJZ9 1412 aa23.41■■□□□ 1.34
CCDC40-205ENST00000571028 SHROOM2Q13796 1616 aa23.38■■□□□ 1.33
CCDC40-205ENST00000571028 PRG4Q92954 1404 aaPredicted RBP23.33■■□□□ 1.33
CCDC40-205ENST00000571028 NPM1P06748 294 aaKnown RBP eCLIP23.33■■□□□ 1.33
CCDC40-205ENST00000571028 FAM69CQ0P6D2 419 aa23.32■■□□□ 1.32
CCDC40-205ENST00000571028 KIF13AQ9H1H9 1805 aa23.31■■□□□ 1.32
CCDC40-205ENST00000571028 ERICH3Q5RHP9 1530 aa23.28■■□□□ 1.32
CCDC40-205ENST00000571028 JPH4Q96JJ6 628 aa23.27■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms