RNA–Protein interactions for RNA: ENST00000571018.5

TVP23B-204, Transcript of trans-golgi network vesicle protein 23 homolog B, humanhuman

TSL 2

Gene TVP23B, Length 718 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TVP23B-204ENST00000571018 NISCHQ9Y2I1 1504 aa30.95■■■□□ 2.55
TVP23B-204ENST00000571018 AEBP2Q6ZN18 517 aaPredicted RBP28.57■■■□□ 2.16
TVP23B-204ENST00000571018 CHIC1Q5VXU3 224 aa27.98■■■□□ 2.07
TVP23B-204ENST00000571018 CCDC180Q9P1Z9 1646 aa27.54■■■□□ 2
TVP23B-204ENST00000571018 ABCC9O60706 1549 aa27.06■■□□□ 1.92
TVP23B-204ENST00000571018 RB1CC1Q8TDY2 1594 aa25.99■■□□□ 1.75
TVP23B-204ENST00000571018 NACADO15069 1562 aa25.94■■□□□ 1.74
TVP23B-204ENST00000571018 DCAF8L2P0C7V8 631 aa25.9■■□□□ 1.74
TVP23B-204ENST00000571018 MYO15BQ96JP2 1530 aa25.78■■□□□ 1.72
TVP23B-204ENST00000571018 ZCCHC6Q5VYS8 1495 aaKnown RBP25.75■■□□□ 1.71
TVP23B-204ENST00000571018 DCAF1Q9Y4B6 1507 aa25.62■■□□□ 1.69
TVP23B-204ENST00000571018 UNC13AQ9UPW8 1703 aa25.34■■□□□ 1.65
TVP23B-204ENST00000571018 PABPN1Q86U42 306 aaKnown RBP eCLIP25.28■■□□□ 1.64
TVP23B-204ENST00000571018 BICRAQ9NZM4 1560 aa25.2■■□□□ 1.62
TVP23B-204ENST00000571018 SCRIBQ14160 1630 aa25.1■■□□□ 1.61
TVP23B-204ENST00000571018 DNAJC5BQ9UF47 199 aa24.96■■□□□ 1.59
TVP23B-204ENST00000571018 SHROOM4Q9ULL8 1493 aa24.94■■□□□ 1.58
TVP23B-204ENST00000571018 PHF23Q9BUL5 403 aaPredicted RBP24.62■■□□□ 1.53
TVP23B-204ENST00000571018 EIF4G1Q04637 1599 aaKnown RBP24.54■■□□□ 1.52
TVP23B-204ENST00000571018 CC2D2AQ9P2K1 1620 aa24.46■■□□□ 1.51
TVP23B-204ENST00000571018 CECR2Q9BXF3 1484 aa24.32■■□□□ 1.48
TVP23B-204ENST00000571018 SENP3Q9H4L4 574 aaPredicted RBP24.23■■□□□ 1.47
TVP23B-204ENST00000571018 SMARCA4P51532 1647 aa24.02■■□□□ 1.44
TVP23B-204ENST00000571018 BAZ1AQ9NRL2 1556 aaPredicted RBP23.99■■□□□ 1.43
TVP23B-204ENST00000571018 NCAPD3P42695 1498 aa23.96■■□□□ 1.43
TVP23B-204ENST00000571018 ATAD2BQ9ULI0 1458 aa23.94■■□□□ 1.42
TVP23B-204ENST00000571018 SMARCA2P51531 1590 aa23.89■■□□□ 1.41
TVP23B-204ENST00000571018 MROH2BQ7Z745 1585 aa23.85■■□□□ 1.41
TVP23B-204ENST00000571018 PEG3Q9GZU2 1588 aa23.81■■□□□ 1.4
TVP23B-204ENST00000571018 HMGXB3Q12766 1538 aa23.8■■□□□ 1.4
TVP23B-204ENST00000571018 BAZ1BQ9UIG0 1483 aaKnown RBP23.72■■□□□ 1.39
TVP23B-204ENST00000571018 WIZO95785 1651 aa23.57■■□□□ 1.36
TVP23B-204ENST00000571018 RSF1Q96T23 1441 aaPredicted RBP23.55■■□□□ 1.36
TVP23B-204ENST00000571018 NESP48681 1621 aa23.38■■□□□ 1.33
TVP23B-204ENST00000571018 TOP2AP11388 1531 aaKnown RBP23.32■■□□□ 1.32
TVP23B-204ENST00000571018 LAMC3Q9Y6N6 1575 aa23.31■■□□□ 1.32
TVP23B-204ENST00000571018 ERCC6Q03468 1493 aa23.31■■□□□ 1.32
TVP23B-204ENST00000571018 CADPSQ9ULU8 1353 aa23.25■■□□□ 1.31
TVP23B-204ENST00000571018 PDS5BQ9NTI5 1447 aa23.17■■□□□ 1.3
TVP23B-204ENST00000571018 CUX2O14529 1486 aa23.13■■□□□ 1.29
TVP23B-204ENST00000571018 CFTRP13569 1480 aa23.09■■□□□ 1.29
TVP23B-204ENST00000571018 KIF21AQ7Z4S6 1674 aa23.06■■□□□ 1.28
TVP23B-204ENST00000571018 CCDC88BA6NC98 1476 aa23.06■■□□□ 1.28
TVP23B-204ENST00000571018 THOC2Q8NI27 1593 aaKnown RBP23.04■■□□□ 1.28
TVP23B-204ENST00000571018 FANCD2Q9BXW9 1451 aa22.97■■□□□ 1.27
TVP23B-204ENST00000571018 CEP164Q9UPV0 1460 aa22.94■■□□□ 1.26
TVP23B-204ENST00000571018 MRC2Q9UBG0 1479 aa22.93■■□□□ 1.26
TVP23B-204ENST00000571018 SUPT5HO00267 1087 aaKnown RBP22.86■■□□□ 1.25
TVP23B-204ENST00000571018 WDR62O43379 1518 aa22.86■■□□□ 1.25
TVP23B-204ENST00000571018 PRDM2Q13029 1718 aa22.83■■□□□ 1.25
TVP23B-204ENST00000571018 PLPPR3Q6T4P5 718 aa22.74■■□□□ 1.23
TVP23B-204ENST00000571018 URB2Q14146 1524 aaKnown RBP22.73■■□□□ 1.23
TVP23B-204ENST00000571018 ABCC8Q09428 1581 aa22.59■■□□□ 1.21
TVP23B-204ENST00000571018 TOPBP1Q92547 1522 aa22.58■■□□□ 1.21
TVP23B-204ENST00000571018 DNAJC5Q9H3Z4 198 aa22.58■■□□□ 1.21
TVP23B-204ENST00000571018 DNMBPQ6XZF7 1577 aa22.54■■□□□ 1.2
TVP23B-204ENST00000571018 FOXD1Q16676 465 aa22.48■■□□□ 1.19
TVP23B-204ENST00000571018 IFT140Q96RY7 1462 aa22.47■■□□□ 1.19
TVP23B-204ENST00000571018 POLA1P09884 1462 aaPredicted RBP22.39■■□□□ 1.17
TVP23B-204ENST00000571018 ZNF608Q9ULD9 1512 aaPredicted RBP22.37■■□□□ 1.17
TVP23B-204ENST00000571018 CUX1P39880 1505 aa22.36■■□□□ 1.17
TVP23B-204ENST00000571018 TARBP1Q13395 1621 aaKnown RBP22.34■■□□□ 1.17
TVP23B-204ENST00000571018 SOGA1O94964 1423 aa22.31■■□□□ 1.16
TVP23B-204ENST00000571018 FGD5Q6ZNL6 1462 aa22.31■■□□□ 1.16
TVP23B-204ENST00000571018 RAD54L2Q9Y4B4 1467 aa22.28■■□□□ 1.16
TVP23B-204ENST00000571018 EIF4G3O43432 1585 aaKnown RBP22.25■■□□□ 1.15
TVP23B-204ENST00000571018 AQRO60306 1485 aaKnown RBP eCLIP22.24■■□□□ 1.15
TVP23B-204ENST00000571018 WRNQ14191 1432 aaPredicted RBP eCLIP22.21■■□□□ 1.15
TVP23B-204ENST00000571018 TDRD9Q8NDG6 1382 aaKnown RBP22.19■■□□□ 1.14
TVP23B-204ENST00000571018 OSCARQ8IYS5 282 aa22.18■■□□□ 1.14
TVP23B-204ENST00000571018 WDR97A6NE52 1622 aa22.16■■□□□ 1.14
TVP23B-204ENST00000571018 TOP2BQ02880 1626 aa22.15■■□□□ 1.14
TVP23B-204ENST00000571018 BIVM-ERCC5R4GMW8 1640 aa22.14■■□□□ 1.14
TVP23B-204ENST00000571018 SYNJ1O43426 1573 aa22.12■■□□□ 1.13
TVP23B-204ENST00000571018 ABCA10Q8WWZ4 1543 aa22.11■■□□□ 1.13
TVP23B-204ENST00000571018 GRIN2BQ13224 1484 aa22.05■■□□□ 1.12
TVP23B-204ENST00000571018 GAPVD1Q14C86 1478 aa22.03■■□□□ 1.12
TVP23B-204ENST00000571018 SNAPC4Q5SXM2 1469 aa22.02■■□□□ 1.12
TVP23B-204ENST00000571018 ABCA5Q8WWZ7 1642 aa22■■□□□ 1.11
TVP23B-204ENST00000571018 MAGI1Q96QZ7 1491 aaPredicted RBP22■■□□□ 1.11
TVP23B-204ENST00000571018 FBLN2P98095 1184 aa21.99■■□□□ 1.11
TVP23B-204ENST00000571018 CHD1O14646 1710 aa21.97■■□□□ 1.11
TVP23B-204ENST00000571018 PBRM1Q86U86 1689 aa21.95■■□□□ 1.1
TVP23B-204ENST00000571018 CHMP7Q8WUX9 453 aaPredicted RBP21.93■■□□□ 1.1
TVP23B-204ENST00000571018 SYNJ2O15056 1496 aa21.92■■□□□ 1.1
TVP23B-204ENST00000571018 ERICH3Q5RHP9 1530 aa21.83■■□□□ 1.09
TVP23B-204ENST00000571018 ADAMTS12P58397 1594 aa21.79■■□□□ 1.08
TVP23B-204ENST00000571018 ARHGEF11O15085 1522 aa21.79■■□□□ 1.08
TVP23B-204ENST00000571018 FHAD1B1AJZ9 1412 aa21.79■■□□□ 1.08
TVP23B-204ENST00000571018 RIMBP3CA6NJZ7 1639 aa21.78■■□□□ 1.08
TVP23B-204ENST00000571018 RIMBP3BA6NNM3 1639 aa21.78■■□□□ 1.08
TVP23B-204ENST00000571018 RIMBP3Q9UFD9 1639 aa21.78■■□□□ 1.08
TVP23B-204ENST00000571018 CLASP1Q7Z460 1538 aa21.78■■□□□ 1.08
TVP23B-204ENST00000571018 GRIN2AQ12879 1464 aa21.77■■□□□ 1.07
TVP23B-204ENST00000571018 KIF27Q86VH2 1401 aa21.75■■□□□ 1.07
TVP23B-204ENST00000571018 TRIM41Q8WV44 630 aa21.75■■□□□ 1.07
TVP23B-204ENST00000571018 PPP6R1Q9UPN7 881 aa21.69■■□□□ 1.06
TVP23B-204ENST00000571018 IGF1RP08069 1367 aa21.69■■□□□ 1.06
TVP23B-204ENST00000571018 NUP160Q12769 1436 aa21.68■■□□□ 1.06
TVP23B-204ENST00000571018 ADRA2BP18089 450 aa21.66■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 79.1 ms