RNA–Protein interactions for RNA: ENST00000570979.1

SPNS2-203, Transcript of sphingolipid transporter 2, humanhuman

TSL 1 (best)

Gene SPNS2, Length 1,768 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPNS2-203ENST00000570979 NISCHQ9Y2I1 1504 aa44.36■■■■■ 4.69
SPNS2-203ENST00000570979 CCDC180Q9P1Z9 1646 aa39.56■■■■□ 3.92
SPNS2-203ENST00000570979 ABCC9O60706 1549 aa39.25■■■■□ 3.87
SPNS2-203ENST00000570979 RB1CC1Q8TDY2 1594 aa37.47■■■■□ 3.59
SPNS2-203ENST00000570979 NACADO15069 1562 aa37.31■■■■□ 3.56
SPNS2-203ENST00000570979 DCAF8L2P0C7V8 631 aa37.29■■■■□ 3.56
SPNS2-203ENST00000570979 MYO15BQ96JP2 1530 aa36.92■■■■□ 3.5
SPNS2-203ENST00000570979 ZCCHC6Q5VYS8 1495 aaKnown RBP36.86■■■■□ 3.49
SPNS2-203ENST00000570979 UNC13AQ9UPW8 1703 aa36.7■■■■□ 3.47
SPNS2-203ENST00000570979 PABPN1Q86U42 306 aaKnown RBP eCLIP36.65■■■■□ 3.46
SPNS2-203ENST00000570979 DCAF1Q9Y4B6 1507 aa36.62■■■■□ 3.45
SPNS2-203ENST00000570979 DNAJC5BQ9UF47 199 aa36.53■■■■□ 3.44
SPNS2-203ENST00000570979 BICRAQ9NZM4 1560 aa36.45■■■■□ 3.43
SPNS2-203ENST00000570979 SCRIBQ14160 1630 aa36.16■■■■□ 3.38
SPNS2-203ENST00000570979 SHROOM4Q9ULL8 1493 aa35.86■■■■□ 3.33
SPNS2-203ENST00000570979 EIF4G1Q04637 1599 aaKnown RBP35.47■■■■□ 3.27
SPNS2-203ENST00000570979 CC2D2AQ9P2K1 1620 aa35.46■■■■□ 3.27
SPNS2-203ENST00000570979 CECR2Q9BXF3 1484 aa35.28■■■■□ 3.24
SPNS2-203ENST00000570979 SMARCA4P51532 1647 aa34.51■■■■□ 3.11
SPNS2-203ENST00000570979 NCAPD3P42695 1498 aa34.47■■■■□ 3.11
SPNS2-203ENST00000570979 ATAD2BQ9ULI0 1458 aa34.45■■■■□ 3.11
SPNS2-203ENST00000570979 BAZ1AQ9NRL2 1556 aaPredicted RBP34.37■■■■□ 3.09
SPNS2-203ENST00000570979 SMARCA2P51531 1590 aa34.32■■■■□ 3.08
SPNS2-203ENST00000570979 MROH2BQ7Z745 1585 aa34.23■■■■□ 3.07
SPNS2-203ENST00000570979 HMGXB3Q12766 1538 aa34.23■■■■□ 3.07
SPNS2-203ENST00000570979 PEG3Q9GZU2 1588 aa34.15■■■■□ 3.06
SPNS2-203ENST00000570979 BAZ1BQ9UIG0 1483 aaKnown RBP34.11■■■■□ 3.05
SPNS2-203ENST00000570979 SUPT5HO00267 1087 aaKnown RBP33.88■■■■□ 3.01
SPNS2-203ENST00000570979 NESP48681 1621 aa33.87■■■■□ 3.01
SPNS2-203ENST00000570979 WIZO95785 1651 aa33.83■■■■□ 3.01
SPNS2-203ENST00000570979 ERCC6Q03468 1493 aa33.8■■■■□ 3
SPNS2-203ENST00000570979 RSF1Q96T23 1441 aaPredicted RBP33.66■■■□□ 2.98
SPNS2-203ENST00000570979 LAMC3Q9Y6N6 1575 aa33.59■■■□□ 2.97
SPNS2-203ENST00000570979 CUX2O14529 1486 aa33.58■■■□□ 2.97
SPNS2-203ENST00000570979 CADPSQ9ULU8 1353 aa33.45■■■□□ 2.95
SPNS2-203ENST00000570979 KIF21AQ7Z4S6 1674 aa33.41■■■□□ 2.94
SPNS2-203ENST00000570979 THOC2Q8NI27 1593 aaKnown RBP33.39■■■□□ 2.94
SPNS2-203ENST00000570979 PDS5BQ9NTI5 1447 aa33.39■■■□□ 2.94
SPNS2-203ENST00000570979 TOP2AP11388 1531 aaKnown RBP33.38■■■□□ 2.93
SPNS2-203ENST00000570979 CFTRP13569 1480 aa33.16■■■□□ 2.9
SPNS2-203ENST00000570979 DNAJC5Q9H3Z4 198 aa33.14■■■□□ 2.9
SPNS2-203ENST00000570979 MRC2Q9UBG0 1479 aa33.1■■■□□ 2.89
SPNS2-203ENST00000570979 FANCD2Q9BXW9 1451 aa33.08■■■□□ 2.89
SPNS2-203ENST00000570979 CEP164Q9UPV0 1460 aa33.05■■■□□ 2.88
SPNS2-203ENST00000570979 CCDC88BA6NC98 1476 aa33.04■■■□□ 2.88
SPNS2-203ENST00000570979 WDR62O43379 1518 aa33.01■■■□□ 2.87
SPNS2-203ENST00000570979 CHIC1Q5VXU3 224 aa32.83■■■□□ 2.85
SPNS2-203ENST00000570979 PRDM2Q13029 1718 aa32.83■■■□□ 2.85
SPNS2-203ENST00000570979 URB2Q14146 1524 aaKnown RBP32.81■■■□□ 2.84
SPNS2-203ENST00000570979 TOPBP1Q92547 1522 aa32.51■■■□□ 2.79
SPNS2-203ENST00000570979 DNMBPQ6XZF7 1577 aa32.4■■■□□ 2.78
SPNS2-203ENST00000570979 ABCC8Q09428 1581 aa32.38■■■□□ 2.77
SPNS2-203ENST00000570979 IFT140Q96RY7 1462 aa32.37■■■□□ 2.77
SPNS2-203ENST00000570979 ZNF608Q9ULD9 1512 aaPredicted RBP32.36■■■□□ 2.77
SPNS2-203ENST00000570979 POLA1P09884 1462 aaPredicted RBP32.21■■■□□ 2.75
SPNS2-203ENST00000570979 TARBP1Q13395 1621 aaKnown RBP32.19■■■□□ 2.74
SPNS2-203ENST00000570979 EIF4G3O43432 1585 aaKnown RBP32.14■■■□□ 2.74
SPNS2-203ENST00000570979 OSCARQ8IYS5 282 aa32.14■■■□□ 2.74
SPNS2-203ENST00000570979 CUX1P39880 1505 aa32.14■■■□□ 2.73
SPNS2-203ENST00000570979 RAD54L2Q9Y4B4 1467 aa32.12■■■□□ 2.73
SPNS2-203ENST00000570979 AQRO60306 1485 aaKnown RBP eCLIP32.11■■■□□ 2.73
SPNS2-203ENST00000570979 FGD5Q6ZNL6 1462 aa32.06■■■□□ 2.72
SPNS2-203ENST00000570979 SOGA1O94964 1423 aa32.05■■■□□ 2.72
SPNS2-203ENST00000570979 TDRD9Q8NDG6 1382 aaKnown RBP31.97■■■□□ 2.71
SPNS2-203ENST00000570979 TRIM41Q8WV44 630 aa31.95■■■□□ 2.71
SPNS2-203ENST00000570979 CHD1O14646 1710 aa31.84■■■□□ 2.69
SPNS2-203ENST00000570979 WDR97A6NE52 1622 aa31.8■■■□□ 2.68
SPNS2-203ENST00000570979 FBLN2P98095 1184 aa31.78■■■□□ 2.68
SPNS2-203ENST00000570979 SNAPC4Q5SXM2 1469 aa31.77■■■□□ 2.68
SPNS2-203ENST00000570979 WRNQ14191 1432 aaPredicted RBP eCLIP31.71■■■□□ 2.67
SPNS2-203ENST00000570979 GRIN2BQ13224 1484 aa31.71■■■□□ 2.67
SPNS2-203ENST00000570979 ABCA10Q8WWZ4 1543 aa31.71■■■□□ 2.67
SPNS2-203ENST00000570979 RIMBP3CA6NJZ7 1639 aa31.71■■■□□ 2.67
SPNS2-203ENST00000570979 RIMBP3BA6NNM3 1639 aa31.71■■■□□ 2.67
SPNS2-203ENST00000570979 RIMBP3Q9UFD9 1639 aa31.71■■■□□ 2.67
SPNS2-203ENST00000570979 SYNJ1O43426 1573 aa31.7■■■□□ 2.67
SPNS2-203ENST00000570979 TOP2BQ02880 1626 aa31.68■■■□□ 2.66
SPNS2-203ENST00000570979 BIVM-ERCC5R4GMW8 1640 aa31.68■■■□□ 2.66
SPNS2-203ENST00000570979 GAPVD1Q14C86 1478 aa31.67■■■□□ 2.66
SPNS2-203ENST00000570979 MAGI1Q96QZ7 1491 aaPredicted RBP31.65■■■□□ 2.66
SPNS2-203ENST00000570979 ARHGEF11O15085 1522 aa31.64■■■□□ 2.66
SPNS2-203ENST00000570979 ABCA5Q8WWZ7 1642 aa31.63■■■□□ 2.65
SPNS2-203ENST00000570979 PBRM1Q86U86 1689 aa31.63■■■□□ 2.65
SPNS2-203ENST00000570979 CHMP7Q8WUX9 453 aaPredicted RBP31.59■■■□□ 2.65
SPNS2-203ENST00000570979 SYNJ2O15056 1496 aa31.55■■■□□ 2.64
SPNS2-203ENST00000570979 LOC105371045A0A1W2PR82 267 aa31.49■■■□□ 2.63
SPNS2-203ENST00000570979 CLASP1Q7Z460 1538 aa31.48■■■□□ 2.63
SPNS2-203ENST00000570979 CYB5RLQ6IPT4 315 aa31.4■■■□□ 2.62
SPNS2-203ENST00000570979 ARAP1Q96P48 1450 aa31.39■■■□□ 2.62
SPNS2-203ENST00000570979 ADAMTS12P58397 1594 aa31.36■■■□□ 2.61
SPNS2-203ENST00000570979 GRIN2AQ12879 1464 aa31.31■■■□□ 2.6
SPNS2-203ENST00000570979 ERICH3Q5RHP9 1530 aa31.29■■■□□ 2.6
SPNS2-203ENST00000570979 FHAD1B1AJZ9 1412 aa31.27■■■□□ 2.6
SPNS2-203ENST00000570979 CEP170Q5SW79 1584 aa31.21■■■□□ 2.59
SPNS2-203ENST00000570979 NUP160Q12769 1436 aa31.2■■■□□ 2.59
SPNS2-203ENST00000570979 FAM9AQ8IZU1 332 aaPredicted RBP31.2■■■□□ 2.58
SPNS2-203ENST00000570979 EEA1Q15075 1411 aa31.18■■■□□ 2.58
SPNS2-203ENST00000570979 ERCC6L2Q5T890 1561 aa31.09■■■□□ 2.57
SPNS2-203ENST00000570979 KIF27Q86VH2 1401 aa31.06■■■□□ 2.56
SPNS2-203ENST00000570979 IGF1RP08069 1367 aa31.05■■■□□ 2.56
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms