RNA–Protein interactions for RNA: ENST00000570883.5

RPAIN-207, Transcript of RPA interacting protein, humanhuman

TSL 2

Gene RPAIN, Length 953 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPAIN-207ENST00000570883 NISCHQ9Y2I1 1504 aa32.97■■■□□ 2.87
RPAIN-207ENST00000570883 CCDC180Q9P1Z9 1646 aa29.42■■■□□ 2.3
RPAIN-207ENST00000570883 ABCC9O60706 1549 aa28.79■■■□□ 2.2
RPAIN-207ENST00000570883 RB1CC1Q8TDY2 1594 aa27.67■■■□□ 2.02
RPAIN-207ENST00000570883 NACADO15069 1562 aa27.61■■■□□ 2.01
RPAIN-207ENST00000570883 ZCCHC6Q5VYS8 1495 aaKnown RBP27.48■■□□□ 1.99
RPAIN-207ENST00000570883 DCAF8L2P0C7V8 631 aa27.43■■□□□ 1.98
RPAIN-207ENST00000570883 MYO15BQ96JP2 1530 aa27.41■■□□□ 1.98
RPAIN-207ENST00000570883 DCAF1Q9Y4B6 1507 aa27.28■■□□□ 1.96
RPAIN-207ENST00000570883 UNC13AQ9UPW8 1703 aa27.21■■□□□ 1.95
RPAIN-207ENST00000570883 BICRAQ9NZM4 1560 aa26.91■■□□□ 1.9
RPAIN-207ENST00000570883 PABPN1Q86U42 306 aaKnown RBP eCLIP26.84■■□□□ 1.89
RPAIN-207ENST00000570883 SCRIBQ14160 1630 aa26.83■■□□□ 1.88
RPAIN-207ENST00000570883 SHROOM4Q9ULL8 1493 aa26.54■■□□□ 1.84
RPAIN-207ENST00000570883 DNAJC5BQ9UF47 199 aa26.48■■□□□ 1.83
RPAIN-207ENST00000570883 EIF4G1Q04637 1599 aaKnown RBP26.16■■□□□ 1.78
RPAIN-207ENST00000570883 CC2D2AQ9P2K1 1620 aa26.08■■□□□ 1.77
RPAIN-207ENST00000570883 CECR2Q9BXF3 1484 aa25.86■■□□□ 1.73
RPAIN-207ENST00000570883 SMARCA4P51532 1647 aa25.65■■□□□ 1.7
RPAIN-207ENST00000570883 BAZ1AQ9NRL2 1556 aaPredicted RBP25.56■■□□□ 1.68
RPAIN-207ENST00000570883 ATAD2BQ9ULI0 1458 aa25.47■■□□□ 1.67
RPAIN-207ENST00000570883 NCAPD3P42695 1498 aa25.45■■□□□ 1.66
RPAIN-207ENST00000570883 SMARCA2P51531 1590 aa25.44■■□□□ 1.66
RPAIN-207ENST00000570883 MROH2BQ7Z745 1585 aa25.44■■□□□ 1.66
RPAIN-207ENST00000570883 PEG3Q9GZU2 1588 aa25.39■■□□□ 1.66
RPAIN-207ENST00000570883 HMGXB3Q12766 1538 aa25.37■■□□□ 1.65
RPAIN-207ENST00000570883 BAZ1BQ9UIG0 1483 aaKnown RBP25.25■■□□□ 1.63
RPAIN-207ENST00000570883 WIZO95785 1651 aa25.2■■□□□ 1.62
RPAIN-207ENST00000570883 RSF1Q96T23 1441 aaPredicted RBP25.07■■□□□ 1.6
RPAIN-207ENST00000570883 NESP48681 1621 aa24.93■■□□□ 1.58
RPAIN-207ENST00000570883 TOP2AP11388 1531 aaKnown RBP24.88■■□□□ 1.57
RPAIN-207ENST00000570883 LAMC3Q9Y6N6 1575 aa24.83■■□□□ 1.57
RPAIN-207ENST00000570883 ERCC6Q03468 1493 aa24.77■■□□□ 1.56
RPAIN-207ENST00000570883 KIF21AQ7Z4S6 1674 aa24.7■■□□□ 1.54
RPAIN-207ENST00000570883 CADPSQ9ULU8 1353 aa24.67■■□□□ 1.54
RPAIN-207ENST00000570883 THOC2Q8NI27 1593 aaKnown RBP24.62■■□□□ 1.53
RPAIN-207ENST00000570883 PDS5BQ9NTI5 1447 aa24.59■■□□□ 1.53
RPAIN-207ENST00000570883 CUX2O14529 1486 aa24.58■■□□□ 1.52
RPAIN-207ENST00000570883 CCDC88BA6NC98 1476 aa24.56■■□□□ 1.52
RPAIN-207ENST00000570883 CFTRP13569 1480 aa24.55■■□□□ 1.52
RPAIN-207ENST00000570883 PRDM2Q13029 1718 aa24.52■■□□□ 1.52
RPAIN-207ENST00000570883 FANCD2Q9BXW9 1451 aa24.44■■□□□ 1.5
RPAIN-207ENST00000570883 CEP164Q9UPV0 1460 aa24.41■■□□□ 1.5
RPAIN-207ENST00000570883 MRC2Q9UBG0 1479 aa24.4■■□□□ 1.5
RPAIN-207ENST00000570883 WDR62O43379 1518 aa24.36■■□□□ 1.49
RPAIN-207ENST00000570883 SUPT5HO00267 1087 aaKnown RBP24.29■■□□□ 1.48
RPAIN-207ENST00000570883 URB2Q14146 1524 aaKnown RBP24.25■■□□□ 1.47
RPAIN-207ENST00000570883 TOPBP1Q92547 1522 aa24.06■■□□□ 1.44
RPAIN-207ENST00000570883 DNMBPQ6XZF7 1577 aa24.03■■□□□ 1.44
RPAIN-207ENST00000570883 ABCC8Q09428 1581 aa23.99■■□□□ 1.43
RPAIN-207ENST00000570883 IFT140Q96RY7 1462 aa23.89■■□□□ 1.42
RPAIN-207ENST00000570883 CUX1P39880 1505 aa23.87■■□□□ 1.41
RPAIN-207ENST00000570883 DNAJC5Q9H3Z4 198 aa23.86■■□□□ 1.41
RPAIN-207ENST00000570883 TARBP1Q13395 1621 aaKnown RBP23.85■■□□□ 1.41
RPAIN-207ENST00000570883 POLA1P09884 1462 aaPredicted RBP23.85■■□□□ 1.41
RPAIN-207ENST00000570883 ZNF608Q9ULD9 1512 aaPredicted RBP23.84■■□□□ 1.41
RPAIN-207ENST00000570883 EIF4G3O43432 1585 aaKnown RBP23.78■■□□□ 1.4
RPAIN-207ENST00000570883 FGD5Q6ZNL6 1462 aa23.78■■□□□ 1.4
RPAIN-207ENST00000570883 RAD54L2Q9Y4B4 1467 aa23.74■■□□□ 1.39
RPAIN-207ENST00000570883 WDR97A6NE52 1622 aa23.7■■□□□ 1.38
RPAIN-207ENST00000570883 SOGA1O94964 1423 aa23.68■■□□□ 1.38
RPAIN-207ENST00000570883 BIVM-ERCC5R4GMW8 1640 aa23.68■■□□□ 1.38
RPAIN-207ENST00000570883 SYNJ1O43426 1573 aa23.66■■□□□ 1.38
RPAIN-207ENST00000570883 AQRO60306 1485 aaKnown RBP eCLIP23.65■■□□□ 1.383e-7■■■□□ 18.2
RPAIN-207ENST00000570883 TOP2BQ02880 1626 aa23.65■■□□□ 1.38
RPAIN-207ENST00000570883 WRNQ14191 1432 aaPredicted RBP eCLIP23.62■■□□□ 1.37
RPAIN-207ENST00000570883 TDRD9Q8NDG6 1382 aaKnown RBP23.57■■□□□ 1.36
RPAIN-207ENST00000570883 CHD1O14646 1710 aa23.54■■□□□ 1.36
RPAIN-207ENST00000570883 ABCA10Q8WWZ4 1543 aa23.54■■□□□ 1.36
RPAIN-207ENST00000570883 PBRM1Q86U86 1689 aa23.52■■□□□ 1.36
RPAIN-207ENST00000570883 ABCA5Q8WWZ7 1642 aa23.51■■□□□ 1.35
RPAIN-207ENST00000570883 SNAPC4Q5SXM2 1469 aa23.46■■□□□ 1.35
RPAIN-207ENST00000570883 OSCARQ8IYS5 282 aa23.45■■□□□ 1.34
RPAIN-207ENST00000570883 GRIN2BQ13224 1484 aa23.44■■□□□ 1.34
RPAIN-207ENST00000570883 GAPVD1Q14C86 1478 aa23.44■■□□□ 1.34
RPAIN-207ENST00000570883 MAGI1Q96QZ7 1491 aaPredicted RBP23.41■■□□□ 1.34
RPAIN-207ENST00000570883 SYNJ2O15056 1496 aa23.31■■□□□ 1.32
RPAIN-207ENST00000570883 ADAMTS12P58397 1594 aa23.29■■□□□ 1.32
RPAIN-207ENST00000570883 FBLN2P98095 1184 aa23.29■■□□□ 1.32
RPAIN-207ENST00000570883 ERICH3Q5RHP9 1530 aa23.25■■□□□ 1.31
RPAIN-207ENST00000570883 RIMBP3CA6NJZ7 1639 aa23.25■■□□□ 1.31
RPAIN-207ENST00000570883 RIMBP3BA6NNM3 1639 aa23.25■■□□□ 1.31
RPAIN-207ENST00000570883 RIMBP3Q9UFD9 1639 aa23.25■■□□□ 1.31
RPAIN-207ENST00000570883 CLASP1Q7Z460 1538 aa23.23■■□□□ 1.31
RPAIN-207ENST00000570883 CHMP7Q8WUX9 453 aaPredicted RBP23.22■■□□□ 1.31
RPAIN-207ENST00000570883 ARHGEF11O15085 1522 aa23.19■■□□□ 1.3
RPAIN-207ENST00000570883 GRIN2AQ12879 1464 aa23.17■■□□□ 1.3
RPAIN-207ENST00000570883 FHAD1B1AJZ9 1412 aa23.16■■□□□ 1.3
RPAIN-207ENST00000570883 CEP170Q5SW79 1584 aa23.11■■□□□ 1.29
RPAIN-207ENST00000570883 KIF27Q86VH2 1401 aa23.11■■□□□ 1.29
RPAIN-207ENST00000570883 NUP160Q12769 1436 aa23.08■■□□□ 1.28
RPAIN-207ENST00000570883 CUL7Q14999 1698 aa23.06■■□□□ 1.28
RPAIN-207ENST00000570883 IGF1RP08069 1367 aa23.03■■□□□ 1.28
RPAIN-207ENST00000570883 TRIM41Q8WV44 630 aa23.03■■□□□ 1.28
RPAIN-207ENST00000570883 ARAP1Q96P48 1450 aa23.01■■□□□ 1.27
RPAIN-207ENST00000570883 SHROOM2Q13796 1616 aa22.97■■□□□ 1.27
RPAIN-207ENST00000570883 RUSC2Q8N2Y8 1516 aa22.95■■□□□ 1.26
RPAIN-207ENST00000570883 ERCC6L2Q5T890 1561 aa22.93■■□□□ 1.26
RPAIN-207ENST00000570883 CARMIL1Q5VZK9 1371 aa22.89■■□□□ 1.25
RPAIN-207ENST00000570883 CYB5RLQ6IPT4 315 aa22.87■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms