RNA–Protein interactions for RNA: ENST00000570798.5

LITAF-204, Transcript of lipopolysaccharide induced TNF factor, humanhuman

TSL 4

Gene LITAF, Length 593 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LITAF-204ENST00000570798 NISCHQ9Y2I1 1504 aa44.26■■■■■ 4.68
LITAF-204ENST00000570798 CCDC180Q9P1Z9 1646 aa39.46■■■■□ 3.91
LITAF-204ENST00000570798 ABCC9O60706 1549 aa38.66■■■■□ 3.78
LITAF-204ENST00000570798 RB1CC1Q8TDY2 1594 aa37.17■■■■□ 3.54
LITAF-204ENST00000570798 NACADO15069 1562 aa37.1■■■■□ 3.53
LITAF-204ENST00000570798 DCAF8L2P0C7V8 631 aa36.92■■■■□ 3.5
LITAF-204ENST00000570798 MYO15BQ96JP2 1530 aa36.85■■■■□ 3.49
LITAF-204ENST00000570798 ZCCHC6Q5VYS8 1495 aaKnown RBP36.83■■■■□ 3.49
LITAF-204ENST00000570798 DCAF1Q9Y4B6 1507 aa36.64■■■■□ 3.46
LITAF-204ENST00000570798 UNC13AQ9UPW8 1703 aa36.43■■■■□ 3.42
LITAF-204ENST00000570798 BICRAQ9NZM4 1560 aa36.1■■■■□ 3.37
LITAF-204ENST00000570798 PABPN1Q86U42 306 aaKnown RBP eCLIP36.08■■■■□ 3.37
LITAF-204ENST00000570798 SCRIBQ14160 1630 aa35.92■■■■□ 3.34
LITAF-204ENST00000570798 SHROOM4Q9ULL8 1493 aa35.67■■■■□ 3.3
LITAF-204ENST00000570798 DNAJC5BQ9UF47 199 aa35.66■■■■□ 3.3
LITAF-204ENST00000570798 EIF4G1Q04637 1599 aaKnown RBP35.12■■■■□ 3.21
LITAF-204ENST00000570798 CC2D2AQ9P2K1 1620 aa35.02■■■■□ 3.2
LITAF-204ENST00000570798 CECR2Q9BXF3 1484 aa34.76■■■■□ 3.15
LITAF-204ENST00000570798 SMARCA4P51532 1647 aa34.38■■■■□ 3.09
LITAF-204ENST00000570798 BAZ1AQ9NRL2 1556 aaPredicted RBP34.31■■■■□ 3.08
LITAF-204ENST00000570798 NCAPD3P42695 1498 aa34.23■■■■□ 3.07
LITAF-204ENST00000570798 ATAD2BQ9ULI0 1458 aa34.21■■■■□ 3.07
LITAF-204ENST00000570798 SMARCA2P51531 1590 aa34.16■■■■□ 3.06
LITAF-204ENST00000570798 MROH2BQ7Z745 1585 aa34.11■■■■□ 3.05
LITAF-204ENST00000570798 PEG3Q9GZU2 1588 aa34.07■■■■□ 3.05
LITAF-204ENST00000570798 HMGXB3Q12766 1538 aa34.05■■■■□ 3.04
LITAF-204ENST00000570798 BAZ1BQ9UIG0 1483 aaKnown RBP33.89■■■■□ 3.02
LITAF-204ENST00000570798 WIZO95785 1651 aa33.75■■■□□ 2.99
LITAF-204ENST00000570798 RSF1Q96T23 1441 aaPredicted RBP33.65■■■□□ 2.98
LITAF-204ENST00000570798 NESP48681 1621 aa33.44■■■□□ 2.94
LITAF-204ENST00000570798 LAMC3Q9Y6N6 1575 aa33.36■■■□□ 2.93
LITAF-204ENST00000570798 TOP2AP11388 1531 aaKnown RBP33.36■■■□□ 2.93
LITAF-204ENST00000570798 ERCC6Q03468 1493 aa33.3■■■□□ 2.92
LITAF-204ENST00000570798 CADPSQ9ULU8 1353 aa33.2■■■□□ 2.9
LITAF-204ENST00000570798 KIF21AQ7Z4S6 1674 aa33.09■■■□□ 2.89
LITAF-204ENST00000570798 PDS5BQ9NTI5 1447 aa33.09■■■□□ 2.89
LITAF-204ENST00000570798 CUX2O14529 1486 aa33.05■■■□□ 2.88
LITAF-204ENST00000570798 THOC2Q8NI27 1593 aaKnown RBP33■■■□□ 2.87
LITAF-204ENST00000570798 CFTRP13569 1480 aa32.99■■■□□ 2.87
LITAF-204ENST00000570798 CCDC88BA6NC98 1476 aa32.96■■■□□ 2.87
LITAF-204ENST00000570798 FANCD2Q9BXW9 1451 aa32.81■■■□□ 2.84
LITAF-204ENST00000570798 PRDM2Q13029 1718 aa32.81■■■□□ 2.84
LITAF-204ENST00000570798 CEP164Q9UPV0 1460 aa32.78■■■□□ 2.84
LITAF-204ENST00000570798 MRC2Q9UBG0 1479 aa32.77■■■□□ 2.84
LITAF-204ENST00000570798 WDR62O43379 1518 aa32.7■■■□□ 2.83
LITAF-204ENST00000570798 SUPT5HO00267 1087 aaKnown RBP32.6■■■□□ 2.81
LITAF-204ENST00000570798 URB2Q14146 1524 aaKnown RBP32.52■■■□□ 2.8
LITAF-204ENST00000570798 TOPBP1Q92547 1522 aa32.29■■■□□ 2.76
LITAF-204ENST00000570798 ABCC8Q09428 1581 aa32.28■■■□□ 2.76
LITAF-204ENST00000570798 DNMBPQ6XZF7 1577 aa32.24■■■□□ 2.75
LITAF-204ENST00000570798 DNAJC5Q9H3Z4 198 aa32.22■■■□□ 2.75
LITAF-204ENST00000570798 IFT140Q96RY7 1462 aa32.1■■■□□ 2.73
LITAF-204ENST00000570798 POLA1P09884 1462 aaPredicted RBP32■■■□□ 2.71
LITAF-204ENST00000570798 CUX1P39880 1505 aa32■■■□□ 2.71
LITAF-204ENST00000570798 TARBP1Q13395 1621 aaKnown RBP31.99■■■□□ 2.71
LITAF-204ENST00000570798 ZNF608Q9ULD9 1512 aaPredicted RBP31.99■■■□□ 2.71
LITAF-204ENST00000570798 FGD5Q6ZNL6 1462 aa31.9■■■□□ 2.7
LITAF-204ENST00000570798 EIF4G3O43432 1585 aaKnown RBP31.87■■■□□ 2.69
LITAF-204ENST00000570798 RAD54L2Q9Y4B4 1467 aa31.85■■■□□ 2.69
LITAF-204ENST00000570798 SOGA1O94964 1423 aa31.84■■■□□ 2.69
LITAF-204ENST00000570798 AQRO60306 1485 aaKnown RBP eCLIP31.78■■■□□ 2.682e-8■■■□□ 18.1
LITAF-204ENST00000570798 BIVM-ERCC5R4GMW8 1640 aa31.72■■■□□ 2.67
LITAF-204ENST00000570798 WDR97A6NE52 1622 aa31.71■■■□□ 2.67
LITAF-204ENST00000570798 WRNQ14191 1432 aaPredicted RBP eCLIP31.71■■■□□ 2.67
LITAF-204ENST00000570798 TOP2BQ02880 1626 aa31.7■■■□□ 2.66
LITAF-204ENST00000570798 SYNJ1O43426 1573 aa31.68■■■□□ 2.66
LITAF-204ENST00000570798 TDRD9Q8NDG6 1382 aaKnown RBP31.68■■■□□ 2.66
LITAF-204ENST00000570798 OSCARQ8IYS5 282 aa31.64■■■□□ 2.66
LITAF-204ENST00000570798 ABCA10Q8WWZ4 1543 aa31.59■■■□□ 2.65
LITAF-204ENST00000570798 CHD1O14646 1710 aa31.54■■■□□ 2.64
LITAF-204ENST00000570798 ABCA5Q8WWZ7 1642 aa31.5■■■□□ 2.63
LITAF-204ENST00000570798 GRIN2BQ13224 1484 aa31.5■■■□□ 2.63
LITAF-204ENST00000570798 PBRM1Q86U86 1689 aa31.49■■■□□ 2.63
LITAF-204ENST00000570798 GAPVD1Q14C86 1478 aa31.48■■■□□ 2.63
LITAF-204ENST00000570798 SNAPC4Q5SXM2 1469 aa31.47■■■□□ 2.63
LITAF-204ENST00000570798 MAGI1Q96QZ7 1491 aaPredicted RBP31.44■■■□□ 2.62
LITAF-204ENST00000570798 FBLN2P98095 1184 aa31.35■■■□□ 2.61
LITAF-204ENST00000570798 SYNJ2O15056 1496 aa31.32■■■□□ 2.6
LITAF-204ENST00000570798 CHMP7Q8WUX9 453 aaPredicted RBP31.27■■■□□ 2.6
LITAF-204ENST00000570798 ERICH3Q5RHP9 1530 aa31.22■■■□□ 2.59
LITAF-204ENST00000570798 RIMBP3CA6NJZ7 1639 aa31.2■■■□□ 2.59
LITAF-204ENST00000570798 RIMBP3BA6NNM3 1639 aa31.2■■■□□ 2.59
LITAF-204ENST00000570798 RIMBP3Q9UFD9 1639 aa31.2■■■□□ 2.59
LITAF-204ENST00000570798 ADAMTS12P58397 1594 aa31.2■■■□□ 2.58
LITAF-204ENST00000570798 CLASP1Q7Z460 1538 aa31.18■■■□□ 2.58
LITAF-204ENST00000570798 ARHGEF11O15085 1522 aa31.15■■■□□ 2.58
LITAF-204ENST00000570798 FHAD1B1AJZ9 1412 aa31.11■■■□□ 2.57
LITAF-204ENST00000570798 GRIN2AQ12879 1464 aa31.1■■■□□ 2.57
LITAF-204ENST00000570798 KIF27Q86VH2 1401 aa31.04■■■□□ 2.56
LITAF-204ENST00000570798 TRIM41Q8WV44 630 aa31.02■■■□□ 2.56
LITAF-204ENST00000570798 NUP160Q12769 1436 aa30.98■■■□□ 2.55
LITAF-204ENST00000570798 CEP170Q5SW79 1584 aa30.98■■■□□ 2.55
LITAF-204ENST00000570798 IGF1RP08069 1367 aa30.97■■■□□ 2.55
LITAF-204ENST00000570798 CUL7Q14999 1698 aa30.92■■■□□ 2.54
LITAF-204ENST00000570798 ARAP1Q96P48 1450 aa30.89■■■□□ 2.54
LITAF-204ENST00000570798 CYB5RLQ6IPT4 315 aa30.82■■■□□ 2.52
LITAF-204ENST00000570798 SHROOM2Q13796 1616 aa30.81■■■□□ 2.52
LITAF-204ENST00000570798 RUSC2Q8N2Y8 1516 aa30.76■■■□□ 2.51
LITAF-204ENST00000570798 CARMIL1Q5VZK9 1371 aa30.76■■■□□ 2.51
LITAF-204ENST00000570798 ERCC6L2Q5T890 1561 aa30.72■■■□□ 2.51
Retrieved 100 of 20,778 RNA–protein pairs in 129.6 ms