RNA–Protein interactions for RNA: ENST00000570758.1

CHD3-212, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 174 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-212ENST00000570758 NISCHQ9Y2I1 1504 aa13.38□□□□□ -0.27
CHD3-212ENST00000570758 CCDC180Q9P1Z9 1646 aa11.91□□□□□ -0.5
CHD3-212ENST00000570758 ABCC9O60706 1549 aa11.81□□□□□ -0.52
CHD3-212ENST00000570758 RB1CC1Q8TDY2 1594 aa11.27□□□□□ -0.61
CHD3-212ENST00000570758 NACADO15069 1562 aa11.24□□□□□ -0.61
CHD3-212ENST00000570758 DCAF8L2P0C7V8 631 aa11.22□□□□□ -0.61
CHD3-212ENST00000570758 MYO15BQ96JP2 1530 aa11.13□□□□□ -0.63
CHD3-212ENST00000570758 ZCCHC6Q5VYS8 1495 aaKnown RBP11.12□□□□□ -0.63
CHD3-212ENST00000570758 DCAF1Q9Y4B6 1507 aa11.04□□□□□ -0.64
CHD3-212ENST00000570758 PABPN1Q86U42 306 aaKnown RBP eCLIP11.04□□□□□ -0.64
CHD3-212ENST00000570758 UNC13AQ9UPW8 1703 aa11.03□□□□□ -0.64
CHD3-212ENST00000570758 DNAJC5BQ9UF47 199 aa10.99□□□□□ -0.65
CHD3-212ENST00000570758 BICRAQ9NZM4 1560 aa10.98□□□□□ -0.65
CHD3-212ENST00000570758 SCRIBQ14160 1630 aa10.9□□□□□ -0.66
CHD3-212ENST00000570758 SHROOM4Q9ULL8 1493 aa10.8□□□□□ -0.68
CHD3-212ENST00000570758 EIF4G1Q04637 1599 aaKnown RBP10.67□□□□□ -0.7
CHD3-212ENST00000570758 CC2D2AQ9P2K1 1620 aa10.66□□□□□ -0.7
CHD3-212ENST00000570758 CECR2Q9BXF3 1484 aa10.61□□□□□ -0.71
CHD3-212ENST00000570758 SMARCA4P51532 1647 aa10.4□□□□□ -0.75
CHD3-212ENST00000570758 NCAPD3P42695 1498 aa10.38□□□□□ -0.75
CHD3-212ENST00000570758 ATAD2BQ9ULI0 1458 aa10.38□□□□□ -0.75
CHD3-212ENST00000570758 BAZ1AQ9NRL2 1556 aaPredicted RBP10.35□□□□□ -0.75
CHD3-212ENST00000570758 SMARCA2P51531 1590 aa10.34□□□□□ -0.75
CHD3-212ENST00000570758 MROH2BQ7Z745 1585 aa10.33□□□□□ -0.76
CHD3-212ENST00000570758 HMGXB3Q12766 1538 aa10.31□□□□□ -0.76
CHD3-212ENST00000570758 PEG3Q9GZU2 1588 aa10.29□□□□□ -0.76
CHD3-212ENST00000570758 BAZ1BQ9UIG0 1483 aaKnown RBP10.27□□□□□ -0.77
CHD3-212ENST00000570758 WIZO95785 1651 aa10.2□□□□□ -0.78
CHD3-212ENST00000570758 NESP48681 1621 aa10.2□□□□□ -0.78
CHD3-212ENST00000570758 RSF1Q96T23 1441 aaPredicted RBP10.16□□□□□ -0.78
CHD3-212ENST00000570758 ERCC6Q03468 1493 aa10.16□□□□□ -0.78
CHD3-212ENST00000570758 LAMC3Q9Y6N6 1575 aa10.11□□□□□ -0.79
CHD3-212ENST00000570758 CUX2O14529 1486 aa10.09□□□□□ -0.79
CHD3-212ENST00000570758 CADPSQ9ULU8 1353 aa10.08□□□□□ -0.8
CHD3-212ENST00000570758 TOP2AP11388 1531 aaKnown RBP10.07□□□□□ -0.8
CHD3-212ENST00000570758 PDS5BQ9NTI5 1447 aa10.05□□□□□ -0.8
CHD3-212ENST00000570758 THOC2Q8NI27 1593 aaKnown RBP10.05□□□□□ -0.8
CHD3-212ENST00000570758 KIF21AQ7Z4S6 1674 aa10.04□□□□□ -0.8
CHD3-212ENST00000570758 CFTRP13569 1480 aa9.99□□□□□ -0.81
CHD3-212ENST00000570758 CCDC88BA6NC98 1476 aa9.98□□□□□ -0.81
CHD3-212ENST00000570758 FANCD2Q9BXW9 1451 aa9.97□□□□□ -0.81
CHD3-212ENST00000570758 MRC2Q9UBG0 1479 aa9.97□□□□□ -0.81
CHD3-212ENST00000570758 CEP164Q9UPV0 1460 aa9.96□□□□□ -0.82
CHD3-212ENST00000570758 DNAJC5Q9H3Z4 198 aa9.94□□□□□ -0.82
CHD3-212ENST00000570758 WDR62O43379 1518 aa9.93□□□□□ -0.82
CHD3-212ENST00000570758 URB2Q14146 1524 aaKnown RBP9.89□□□□□ -0.83
CHD3-212ENST00000570758 PRDM2Q13029 1718 aa9.87□□□□□ -0.83
CHD3-212ENST00000570758 SUPT5HO00267 1087 aaKnown RBP9.82□□□□□ -0.84
CHD3-212ENST00000570758 TOPBP1Q92547 1522 aa9.8□□□□□ -0.84
CHD3-212ENST00000570758 DNMBPQ6XZF7 1577 aa9.76□□□□□ -0.85
CHD3-212ENST00000570758 IFT140Q96RY7 1462 aa9.75□□□□□ -0.85
CHD3-212ENST00000570758 ZNF608Q9ULD9 1512 aaPredicted RBP9.75□□□□□ -0.85
CHD3-212ENST00000570758 ABCC8Q09428 1581 aa9.75□□□□□ -0.85
CHD3-212ENST00000570758 POLA1P09884 1462 aaPredicted RBP9.71□□□□□ -0.86
CHD3-212ENST00000570758 CUX1P39880 1505 aa9.69□□□□□ -0.86
CHD3-212ENST00000570758 TARBP1Q13395 1621 aaKnown RBP9.69□□□□□ -0.86
CHD3-212ENST00000570758 RAD54L2Q9Y4B4 1467 aa9.68□□□□□ -0.86
CHD3-212ENST00000570758 EIF4G3O43432 1585 aaKnown RBP9.67□□□□□ -0.86
CHD3-212ENST00000570758 AQRO60306 1485 aaKnown RBP eCLIP9.66□□□□□ -0.86
CHD3-212ENST00000570758 FGD5Q6ZNL6 1462 aa9.66□□□□□ -0.86
CHD3-212ENST00000570758 SOGA1O94964 1423 aa9.66□□□□□ -0.86
CHD3-212ENST00000570758 OSCARQ8IYS5 282 aa9.66□□□□□ -0.86
CHD3-212ENST00000570758 TDRD9Q8NDG6 1382 aaKnown RBP9.63□□□□□ -0.87
CHD3-212ENST00000570758 WDR97A6NE52 1622 aa9.58□□□□□ -0.88
CHD3-212ENST00000570758 SNAPC4Q5SXM2 1469 aa9.58□□□□□ -0.88
CHD3-212ENST00000570758 CHD1O14646 1710 aa9.57□□□□□ -0.88
CHD3-212ENST00000570758 TRIM41Q8WV44 630 aa9.57□□□□□ -0.88
CHD3-212ENST00000570758 SYNJ1O43426 1573 aa9.57□□□□□ -0.88
CHD3-212ENST00000570758 WRNQ14191 1432 aaPredicted RBP eCLIP9.56□□□□□ -0.88
CHD3-212ENST00000570758 GRIN2BQ13224 1484 aa9.56□□□□□ -0.88
CHD3-212ENST00000570758 FBLN2P98095 1184 aa9.56□□□□□ -0.88
CHD3-212ENST00000570758 ABCA10Q8WWZ4 1543 aa9.56□□□□□ -0.88
CHD3-212ENST00000570758 TOP2BQ02880 1626 aa9.55□□□□□ -0.88
CHD3-212ENST00000570758 BIVM-ERCC5R4GMW8 1640 aa9.55□□□□□ -0.88
CHD3-212ENST00000570758 GAPVD1Q14C86 1478 aa9.54□□□□□ -0.88
CHD3-212ENST00000570758 MAGI1Q96QZ7 1491 aaPredicted RBP9.53□□□□□ -0.88
CHD3-212ENST00000570758 RIMBP3CA6NJZ7 1639 aa9.53□□□□□ -0.88
CHD3-212ENST00000570758 RIMBP3BA6NNM3 1639 aa9.53□□□□□ -0.88
CHD3-212ENST00000570758 ABCA5Q8WWZ7 1642 aa9.53□□□□□ -0.88
CHD3-212ENST00000570758 RIMBP3Q9UFD9 1639 aa9.53□□□□□ -0.88
CHD3-212ENST00000570758 PBRM1Q86U86 1689 aa9.51□□□□□ -0.89
CHD3-212ENST00000570758 ARHGEF11O15085 1522 aa9.51□□□□□ -0.89
CHD3-212ENST00000570758 CHMP7Q8WUX9 453 aaPredicted RBP9.51□□□□□ -0.89
CHD3-212ENST00000570758 SYNJ2O15056 1496 aa9.5□□□□□ -0.89
CHD3-212ENST00000570758 CLASP1Q7Z460 1538 aa9.48□□□□□ -0.89
CHD3-212ENST00000570758 ARAP1Q96P48 1450 aa9.45□□□□□ -0.9
CHD3-212ENST00000570758 ADAMTS12P58397 1594 aa9.45□□□□□ -0.9
CHD3-212ENST00000570758 CYB5RLQ6IPT4 315 aa9.44□□□□□ -0.9
CHD3-212ENST00000570758 ERICH3Q5RHP9 1530 aa9.43□□□□□ -0.9
CHD3-212ENST00000570758 GRIN2AQ12879 1464 aa9.43□□□□□ -0.9
CHD3-212ENST00000570758 FHAD1B1AJZ9 1412 aa9.43□□□□□ -0.9
CHD3-212ENST00000570758 CEP170Q5SW79 1584 aa9.41□□□□□ -0.9
CHD3-212ENST00000570758 NUP160Q12769 1436 aa9.4□□□□□ -0.9
CHD3-212ENST00000570758 KIF27Q86VH2 1401 aa9.37□□□□□ -0.91
CHD3-212ENST00000570758 ERCC6L2Q5T890 1561 aa9.37□□□□□ -0.91
CHD3-212ENST00000570758 IGF1RP08069 1367 aa9.37□□□□□ -0.91
CHD3-212ENST00000570758 SHROOM2Q13796 1616 aa9.34□□□□□ -0.91
CHD3-212ENST00000570758 CUL7Q14999 1698 aa9.32□□□□□ -0.92
CHD3-212ENST00000570758 RUSC2Q8N2Y8 1516 aa9.31□□□□□ -0.92
CHD3-212ENST00000570758 JPH4Q96JJ6 628 aa9.31□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms